Developing the control criterion for a continuous culture of microorganisms

A short survey and a critical analysis of previously proposed criteria for growth control of populations of microorganisms in the chemostat are presented. Based on the analysis of a mathematical model of the steady state of a microbial population in the chemostat, an adequate control criterion is suggested, along with a method to identify the corresponding control factors. The new control criterion is expressed as a product of the factor transformation coefficient and the sensitivity coefficient (SC) of the biomass with respect to the change in the factor at the chemostat inlet (hereinafter, the biomass SC). The control criterion determines the strength of the control exerted by a factor. The method of determining control factors consists in experimental determination of the real SCs for factors and the biomass and calculation on this basis of the corresponding ideal SCs, assuming constant factor transformation coefficients. The ideal SCs are shown to add up to integer values, a constraint that we call quantization relationships. Such relationships are used to test the completeness of the list of control factors. The proposed method was applied to both our own and literature data.Translated from Mikrobiologiya, Vol. 74, No. 1, 2005, pp. 5–16.Original Russian Text Copyright © 2005 by Adamovich, Rogozin, Degermendzhi.     

Defined media optimization for growth of recombinant Escherichia coli X90

An optimized, defined minimal medium was developed to support balanced growth of Escherichia coli X90 harboring a recombinant plasmid. Foreign protein expression was repressed in these studies. A pulse injection technique was used to identify the growth responses to nutrients in a chemostat. Once the nutrients essential for growth had been identified, the yield coefficients for individual medium components. These yield coefficients were used to develop an optimized, glucose-limited defined minimal medium that supports balanced cell growth in chemostat culture. The biomass and substrate concentrations follow the Monod chemostat model. The maximum specific growth rate determined in a washout experiment is 0.87 h(-1) for this strain in the optimized medium. the glucose yield factor is 0.42 g DCW/g glucose and the maintenance coefficient is zero in the glucose-limited chemostat culture. (c) 1993 John Wiley & Sons, Inc.     

Continuous cultivations of a Penicillium chrysogenum strain expressing the expandase gene from Streptomyces clavuligerus: Growth yields and morphological characterization

The growth stoichiometry of a Penicillium chrysogenum strain expressing the expandase gene from Streptomyces clavuligerus was determined in glucose-limited chemostat cultivations using a chemically defined medium. This strain produces adipoyl-7-aminodeacetoxycephalosporanic acid (ad-7-ADCA) when it is fed with adipic acid. The biomass yield and maintenance coefficients for the strain were similar to those found for penicillin-producing strains of Penicillium chrysogenum. The maximum specific growth rate in the chemostat was found to be 0.11 h(-1). Metabolic degradation of adipate was found to take place in significant amounts only at dilution rates below 0.03 h(-1). After three to five residence times, adipate degradation and ad-7-ADCA production disappeared, and this allowed determination of the biomass yield coefficient on adipate. The morphology was measured at different dilution rates and the mean total hyphal length and mean number of tips both increased with an increase in dilution rate from 0.015 to 0.065 h(-1). Both variables decreased when the dilution rate was increased above 0.065 h(-1). A correlation between mean total hyphal length and productivity of ad-7-ADCA was found.     

A simple and reliable method for the determination of cellular RNA content

Summary This communication describes a rapid, simple and reliable method for the determination of the cellular RNA content. In the study of microbial growth and product formation the cellular RNA content is a good measure of the activity of the biomass. Results from applying the method to monitor transient experiments in a chemostat with Lactococcus cremoris are presented.     

In situ pulse respirometric methods for the estimation of kinetic and stoichiometric parameters in aerobic microbial communities

In situ pulse respirometry was applied in an activated sludge bubble column treating synthetic wastewater for the estimation of the (i) maximum specific oxygen consumption rate, (ii) substrate affinity constant, (iii) biomass growth yield, (iv) maintenance coefficient, and (v) specific endogenous respiration rate. Parameters obtained from respirometry were compared to those obtained by the chemostat method, based on substrate and biomass measurements, under several dilution rates. The low sensitivity of substrate measurement methods and the difficulties of sampling heterogeneous biomass suspension are critical issues limiting the applicability of the chemostat method. Additionally, the extensive time consuming nature of this method allows concluding that chemostat method presents several disadvantages in comparison with in situ pulse respirometric techniques. Parameters were obtained from respirograms by fitting ASM1 and ASM3 models, and from experiments performed by injecting pulses of increasing substrate concentration. The injection of pulses of increasing concentration was the most adequate method, with several advantages such as a simpler experimental data interpretation, and results with better confidence.Considering the assessment and comparison of the experimental and calculation methods presented, it is recommended that the estimation of kinetic and stoichiometric parameters in mixed aerobic cultures should preferentially be performed by using in situ respirometric techniques.     

Protease productivity in chemostat fermentations with retention of biomass on suspended particles

Retention of bacterial biomass (Bacillus firmus) in a chemostat by a new carrier material, Luxopor, led to increased productivity of protease. Luxopor is a porous mineral product of irregular shape. When these particles are put into a fermenter, aeration and stirring make them float. Fermenters with Luxopor loadings of 200 and 500 g l^?1 were run as chemostats parallel to a control chemostat without it. The Luxopor particles contained >50% of the biomass in the chemostats (50 mg dry cell weight g^?1), which had a higher biomass and protease activity in the culture fluid than the control chemostat. The overall protease productivity was up to four times higher than that of the control.     

Heterotrophic growth of Thiobacillus acidophilus in batch and chemostat cultures

Heterotrophic growth of the facultatively chemolithoautotrophic acidophile Thiobacillus acidophilus was studied in batch cultures and in carbon-limited chemostat cultures. The spectrum of carbon sources supporting heterotrophic growth in batch cultures was limited to a number of sugars and some other simple organic compounds. In addition to ammonium salts and urea, a number of amino acids could be used as nitrogen sources. Pyruvate served as a sole source of carbon and energy in chemostat cultures, but not in batch cultures. Apparently the low residual concentrations in the steady-state chemostat cultures prevented substrate inhibition that already was observed at 150 M pyruvate. Molar growth yields of T. acidophilus in heterotrophic chemostat cultures were low. The Y _max and maintenance coefficient of T. acidophilus grown under glucose limitation were 69 g biomass · mol^–1 and 0.10 mmol · g^–1 · h^–1, respectively. Neither the Y _max nor the maintenance coefficient of glucose-limited chemostat cultures changed when the culture pH was increased from 3.0 to 4.3. This indicates that in T. acidophilus the maintenance of a large pH gradient is not a major energy-requiring process. Significant activities of ribulose-1,5-bisphosphate carboxylase were retained during heterotrophic growth on a variety of carbon sources, even under conditions of substrate excess. Also thiosulphate- and tetrathionate-oxidising activities were expressed under heterotrophic growth conditions.     

Amino acid supplementation improves heterologous protein production by Saccharomyces cerevisiae in defined medium

Supplementation of a chemically defined medium with amino acids or succinate to improve heterologous xylanase production by a prototrophic Saccharomyces cerevisiae transformant was investigated. The corresponding xylanase production during growth on ethanol in batch culture and in glucose-limited chemostat culture were quantified, as the native ADH2 promoter regulating xylanase expression was derepressed under these conditions. The addition of a balanced mixture of the preferred amino acids, Ala, Arg, Asn, Glu, Gln and Gly, improved both biomass and xylanase production, whereas several other individual amino acids inhibited biomass and/or xylanase production. Heterologous protein production by the recombinant yeast was also improved by supplementing the medium with succinate. The production of heterologous xylanase during growth on ethanol or glucose could thus be improved by supplementing metabolic precursors in the carbon- or nitrogen-metabolism.     

Efficient generation of functional Schwann cells from adipose-derived stem cells in defined conditions

Schwann cells (SCs) are hitherto regarded as the most promising candidates for viable cell-based therapy to peripheral nervous system (PNS) injuries or degenerative diseases. However, the extreme drawbacks of transplanting autologous SCs for clinical applications still represent a significant bottleneck in neural regenerative medicine, mainly owing to the need of sacrificing a functional nerve to generate autologous SCs and the nature of slow expansion of the SCs. Thus, it is of great importance to establish an alternative cell system for the generation of sufficient SCs. Here, we demonstrated that adipose-derived stem cells (ADSCs) of rat robustly give rise to morphological, phenotypic and functional SCs using an optimized protocol. After undergoing a 3-week in vitro differentiation, almost all of treated ADSCs exhibited spindle shaped morphology similar to genuine SCs and expressed SC markers GFAP and S100. Most importantly, apart from acquisition of SC antigenic and biochemical features, the ADSC-derived SCs were functionally identical to native SCs as they possess a potential ability to form myelin, and secret nerve growth factor (NGF), brain-derived neurotrophic factor (BDNF) and glia-derived neurotrophic factor (GDNF). The current study may provide an ideal strategy for harvesting sufficient SCs for cell-based treatment of various peripheral nerve injuries or disorders.     

Control analysis of time-dependent metabolic systems

Metabolic Control Analysis is extended to time dependent systems. It is assumed that the time derivative of the metabolite concentrations can be written as a linear combination of rate laws, each one of first order with respect to the corresponding enzyme concentration. The definitions of the control and elasticity coefficients are extended, and a new type of coefficient ("time coefficient", "T") is defined. First, we prove that simultaneous changes in all enzyme concentrations by the same arbitrary factor, is equivalent to a change in the time scale. When infinitesimal changes are considered, these arguments lead to the derivation of general summation theorems that link control and time coefficients. The comparison of two systems with identical rates, that only differ in one metabolite concentration, leads to a method for the construction of general connectivity theorems, that relate control and elasticity coefficients. A mathematical proof in matrix form, of the summation and connectivity relationships, for time dependent systems is given. Those relationships allow one to express the control coefficients in terms of the elasticity and time coefficients for the case of unbranched pathway.     

三种林分生物量估算方法的比较

区域森林生物量的估算方法是人们目前关注的焦点,建立林分生物量模型成为一种趋势.本文以吉林省落叶松人工林固定样地为例,采用非线性似乎不相关回归法构建2种林分生物量模型,即基于林分变量的林分生物量模型(模型系统Ⅰ)和基于生物量换算系数的林分生物量模型(模型系统Ⅱ),给出落叶松人工林固定生物量换算系数值,并比较了3种林分生物量估算方法的预估精度.结果表明: 所建立的2种林分生物量模型中,总生物量和树干生物量模型拟合和预测效果较好,其R_a²>0.95,且均方根误差(RMSE)、平均预测误差(MPE)和平均绝对误差(MAE)都较小.树叶和树枝生物量模型拟合和预测效果相对较差,其模型的R_a²<0.95.模型系统Ⅰ和模型系统Ⅱ的预测精度均优于固定生物量换算系数法.基于生物量换算系数的林分生物量模型属于材积源生物量法,其本质与基于林分变量的林分生物量模型不同,但二者的预测效果相当.固定生物量换算系数的预测能力较差,将生物量与蓄积量之比假定为恒定常数是不恰当的.此外,为了使模型参数估计更有效,所建立的生物量模型应当考虑林分总生物量及各分项生物量的可加性.     

Panaxydol treatment enhances the biological properties of Schwann cells in vitro

Schwann cells (SCs), the glial cells of the peripheral nerve system, play a key role in the regeneration of injured peripheral nerves. However, problems with the use of SCs to repair peripheral nerves include attenuated biologic properties and impaired function with ageing. Panaxydol (PND) effectively protects neurons against injury in degenerative diseases. We investigated the protective role of PND in SCs through immunocytochemistry and ELISA assay. PND promoted the expression and secretion of nerve growth factor (NGF) and brain-derived neurotrophic factor (BDNF) by SCs in a dose-dependent manner at doses of 2.5-20 and 5.0-20 μM, respectively. The effects on both factors were maximal at 10 μM. PND also enhanced the synthesis of actin, a key component of the cytoskeleton. When we examined mitochondria in SCs with probes marked with rhodamine-123, fluorescence intensity was stronger in the PND group than in a control group, indicating a stabilized mitochondrial transmembrane potential. PND modified cytoskeleton dynamics and induced SCs to secrete and express neurotrophic factors (NTFs), and to resist high energy consumption in a dose-dependent manner. It exerted its maximum effect at 10 μM. PND treatment of SCs might be promising strategies for the application of these cells in repairing PNS injury by enhancing the biological properties.     

Contributions of <Emphasis Type="Italic">I</Emphasis><Subscript>h</Subscript> to feature selectivity in layer II stellate cells of the entorhinal cortex

Stellate cells (SCs) of the entorhinal cortex generate prominent subthreshold oscillations that are believed to be important contributors to the hippocampal theta rhythm. The slow inward rectifier I _h is expressed prominently in SCs and has been suggested to be a dominant factor in their integrative properties. We studied the input-output relationships in stellate cells (SCs) of the entorhinal cortex, both in control conditions and in the presence of the I _h antagonist ZD7288. Our results show that I _h is responsible for SCs’ subthreshold resonance, and contributes to enhanced spiking reliability to theta-rich stimuli. However, SCs still exhibit other traits of rhythmicity, such as subthreshold oscillations, under I _h blockade. To clarify the effects of I _h on SC spiking, we used a generalized form of principal component analysis to show that SCs select particular features with relevant temporal signatures from stimuli. The spike-selected mix of those features varies with the frequency content of the stimulus, emphasizing the inherent nonlinearity of SC responses. A number of controls confirmed that this selectivity represents a stimulus-induced change in the cellular input-output relationship rather than an artifact of the analysis technique. Sensitivity to slow features remained statistically significant in ZD7288. However, with I _h blocked, slow stimulus features were less predictive of spikes and spikes conveyed less information about the stimulus over long time scales. Together, these results suggest that I _h is an important contributor to the input-output relationships expressed by SCs, but that other factors in SCs also contribute to subthreshold oscillations and nonlinear selectivity to slow features. Action Editor: Xiao-Jing Wang     

The continuously fed batch reactor for measuring microbial growth rates

The contiuously fed batch reactor (CFBR) is proposed as an alternative technique to the traditional chemostat and batch cultures, for measuring microbial growth rates. After reviewing the pitfalls which plague the conventional growth measurement techniques, the methodology for operating the CFBR to generate specific growth-rate-versus-substrate-concentration data is detailed. This information is extracted from the transient state of the CFBR where both the biomass and substrate concentration show extrema in time. It is suggested that the CFBR can be used for measuring microbial growth rates at low rates at low substrate concentrations where the chemostat method normally encounters difficulties.     

Experimental and theoretical discrepancies in growth yields of Acinetobacter calcoaceticus: a correction of published data

Acinetobacter calcoaceticus can incompletely oxidize aldose sugars to the corresponding aldonic acids. This reaction can serve as an auxiliary energy source for the organism. An increase in biomass yields is observed in acetate-limited chemostat cultures grown in the presence of, for example, xylose. However, experimental and theoretical discrepancies exist with respect to the magnitude of the yield enhancement as a result of xylose addition. We previously observed increases in cell yields that were unexpectedly high. In contrast, other data were in agreement with the theoretical predictions. In this paper, evidence is presented indicating that this discrepancy is likely to be due to errors in the methodology used for our previous investigation, in particular with respect to the determination of biomass concentrations. Correspondence to: J. P. van Dijken     

A comparison between aerobic growth of Bacillus licheniformis in continuous culture and partial-recycling fermentor,with contributions to the discussion on maintenance energy demand

Energy costs of biomass synthesis are relatively higher at low than at high specific growth rates () because of an increased protein content of the cell and increased costs of protein synthesis as such at low values. A comparison of aerobic, glucose limited cultures of Bacillus licheniformis in a chemostat and in a partial-recycling fermentor indicated that pulse-wise nutrient addition increased the maintenance energy demand (m). In the chemostat experiments, we also found a striking deviation from linearity between substrate consumption and , with large implications for the maintenance coefficient. The deviation is mainly due to a large shift in metabolic carbon flows at specific growth rates between 50 and 100% of _max. At those growth rates, uncoupled growth occurs, presumably as a necessary condition for faster growth, since uncoupling results in a faster energysupply for biosynthetic purposes.The maintenance coefficient as determined by chemostat studies should be regarded as a compounds parameter, constituted of maintenance energy demands like ppGpp accumulation, variable costs of mRNA and protein accumulation, kinetic proofreading etc. and influenced by fermentor operation parameters like the substrate addition rate; moreover, both constancy of m and a linear relation between m and appear quite unlikely.     

Image analysis of Daphnia populations: non-destructive determination of demography and biomass in cultures

SUMMARY 1. An image analysis technique was developed for the semiautomatic determination of abundance, size distribution and biomass in Daphnia cultures. This allowed detailed observations of growth, demography and biomass accumulation in live populations, avoiding artifacts caused by subsampling and sampling losses.
2. The image analysis method gave fast, non-destructive and reliable individual counts, even in cultures with high density and a large fraction of juveniles.
3. In Daphnia , animal width changes with nutritional status and growth within instar, while length changes only at the moult. Thus, estimation of individual biomass using an ellipsoidal model based on animal width gave improved biomass calculations compared to manual counting, sizing, and length : weight regressions.
4. The power of the image analysis technique for assessing population growth and size structure was demonstrated in two 40-day experiments, with Daphnia magna feeding on the green algae Selenastrum capricornutum in a two-stage chemostat system.