Effects of plant biomass, plant diversity, and water content on bacterial communities in soil lysimeters: implications for the determinants of bacterial diversity

Soils may comprise tens of thousands to millions of bacterial species. It is still unclear whether this high level of diversity is governed by functional redundancy or by a multitude of ecological niches. In order to address this question, we analyzed the reproducibility of bacterial community composition after different experimental manipulations. Soil lysimeters were planted with four different types of plant communities, and the water content was adjusted. Group-specific phylogenetic fingerprinting by PCR-denaturing gradient gel electrophoresis revealed clear differences in the composition of Alphaproteobacteria, Betaproteobacteria, Bacteroidetes, Chloroflexi, Planctomycetes, and Verrucomicrobia populations in soils without plants compared to that of populations in planted soils, whereas no influence of plant species composition on bacterial diversity could be discerned. These results indicate that the presence of higher plant species affects the species composition of bacterial groups in a reproducible manner and even outside of the rhizosphere. In contrast, the environmental factors tested did not affect the composition of Acidobacteria, Actinobacteria, Archaea, and Firmicutes populations. One-third (52 out of 160) of the sequence types were found to be specifically and reproducibly associated with the absence or presence of plants. Unexpectedly, this was also true for numerous minor constituents of the soil bacterial assemblage. Subsequently, one of the low-abundance phylotypes (beta10) was selected for studying the interdependence under particular experimental conditions and the underlying causes in more detail. This so-far-uncultured phylotype of the Betaproteobacteria species represented up to 0.18% of all bacterial cells in planted lysimeters compared to 0.017% in unplanted systems. A cultured representative of this phylotype exhibited high physiological flexibility and was capable of utilizing major constituents of root exudates. Our results suggest that the bacterial species composition in soil is determined to a significant extent by abiotic and biotic factors, rather than by mere chance, thereby reflecting a multitude of distinct ecological niches.     

Patterns of plant diversity in Africa south of the Sahara and their implications for conservation management

Plant species richness and range-size rarity in Africa south of the Sahara is concentrated in centres of plant diversity and endemism. Distribution patterns of plants mapped in the Distributiones Plantarum Africanum series and selected taxonomic monographs are analysed using the computer programme WORLDMAP. The plants are divided into four groups: herbaceous geophytes, mesophytic herbs, light-demanding shrubs and woody genera. Each group has peaks of species richness and range-size rarity at locations different to the other groups. Herbaceous geophytes and mesophytic herbs have their peaks of species richness and range-size rarity in the same location, the western Cape for geophytes and the Crystal Mountain for mesophytic herbs, whereas light-demanding shrubs and woody genera have peaks in different places. The results are discussed in relation to possible factors determining species richness and endemism and their likely conservation significance.     

Pathogenesis of experimentally induced bacterial cold water disease in ayu Plecoglossus altivelis

Ayu Plecoglossus altivelis were experimentally infected with Flavobacterium psychrophilum, which is the causative agent of bacterial cold water disease (CWD). The fish infected by immersion usually died within an hour after they became moribund. The blood volume and haematocrit values of moribund fish were low, while those values of many infected fish that were not moribund were in the range of controls. Most of the affected fish in the immersion-infected groups had ulcerative lesions on their lower jaw. No histological evidence of haemolysis was observed. These results suggest that rapid bleeding occurred through ulcerative lesions, probably causing hypoxia which killed the fish. Ulcerative lesions developed on the dorsal skin when this area had been slightly abraded artificially prior to immersion challenge. Histologically, F. psychrophilum was initially found on the skin that had microscopic injuries, but not on normal skin. The bacterium then entered the dermis and migrated through connective tissues. The lesions subsequently expanded into the underlying musculature through the myosepta, developed necrotic myositis and formed externally open ulcers. Only in later stages of infection did mild lesions develop in the internal organs and the gill, probably caused by the bacterium migrating through blood vessels. This suggests that infection with CWD through the gill or digestive tract is unlikely. Virtually no open lesions were found in ayu challenged by intramuscular injections except at the injection sites. The results suggest that skin injuries are major portals of entry for F. psychrophilum in ayu, and the bacterium has affinity for collagenous connective tissues.     

Wetland plant growth under contrasting water regimes associated with river regulation and drought: implications for environmental water management

An important characteristic of many wetland plants in semi-arid regions is their capacity to withstand fluctuations between extended dry phases and floods. However, anthropogenic river regulation can reduce natural flow variability in riverine wetlands, causing a decline in the frequency and duration of deep flooding as well as extended droughts, and an increase in shallow flooding and soil saturation. Our aim in this paper was to use an experimental approach to examine whether reductions in flooding and drought disadvantage species adapted to both these extremes, and favours those with water requirements that match the new regime of frequent low-level flooding. We compared the growth characteristics and biomass allocation of three native Australian aquatic macrophytes (Pseudoraphis spinescens, Juncus ingens and Typha domingensis), which co-occur at Barmah Forest, south-eastern Australia, under three water treatments: drought, soil saturation and deep flooding. The responses of species to the treatments largely reflected changes in their relative abundance at Barmah Forest since river regulation. Typha domingensis, which has remained uncommon, performed relatively poorly in all treatments, while J. ingens, which has increased its range, exhibited more vigorous growth under soil saturation. Pseudoraphis spinescens, which was once widespread but has declined markedly in its distribution, grew strongly under all water treatments. These findings suggest that a return to more natural, variable river flow regimes can potentially be an important conservation and restoration strategy in ecosystems characterised by species that have adaptations to extreme hydrological growing conditions.     

Heat shock induced proteins in plant cells

Tobacco (Nicotiana tabacum) and soybean (Glycine max) tissue culture cells were exposed to a heat shock and protein synthesis studied by SDS-polyacrylamide gel electrophoresis after labeling with radioactive amino acids. A new pattern of protein synthesis is observed in heat-shocked cells compared to that in control cells. About 12 protein bands, some newly appearing, others synthesized in greatly increased quantities in heat-shock cells, are seen. Several of the heat-shock proteins (HSPs) in both tobacco and soybean are similar in size. One of the HSPs in soybean (76K) shares peptide homology with its presumptive 25°C counterpart, indicating that the synthesis of at least some HSPs may not be due to activation of new genes. The optimum temperature for maximal induction of most HSPs is 39–40°C. Total protein synthesis decreases as heat-shock temperature is increased and is barely detectable at 45°C. The heat-shock response is maintained for a relatively short time in tobacco cells. After 3 hr at 39°C, a decrease is seen in the synthesis of the HSPs, and after 4 hr practically no HSPs are synthesized. After exposure to 39°C for 1 hr, followed by a return of tobacco cells to 26°C, recovery to the control pattern of synthesis requires greater than 6 hours. These results indicate that cells of flowering plants exhibit a heat-shock response similar to that observed in animal cells.     

Electrophysiological changes in heart failure and their implications for arrhythmogenesis

Heart failure is the final common pathway of various cardiac pathologies and is associated with sudden cardiac death, mostly caused by ventricular arrhythmias. In this paper we briefly review the electrophysiological remodeling and the alterations in intracellular calcium handling, and the resulting arrhythmogenic mechanisms associated with heart failure. Intercellular uncoupling and fibrosis are identified as a major arrhythmogenic factors. Diet and ventricular wall stretch are discussed as modulating factors. Finally, emphasis is placed on the hitherto poorly studied aspects of right ventricular failure. This article is part of a Special Issue entitled: Heart failure pathogenesis and emerging diagnostic and therapeutic interventions.     

Heat shock induced changes of plant cell ultrastructure and autoradiographic localization of heat shock proteins

Treating tomato cell cultures and leaves by a physiological heat shock (hs) at 35 to 39 degrees C results in a progressive disintegration of the nucleolus and the assembly of cytoplasmic hs granules. Other ultrastructural changes are not observed. The alterations of the nucleoli coincide with an immediate stop of the processing and with a strongly decreased synthesis of pre-rRNA. Both hs effects are reversed after shift-down to normal temperature conditions (25 degrees C). Assembly of cytoplasmic hs granules depends on the accumulation of the newly forming hs proteins and on supraoptimal temperatures. It is not observed in preinduced cultures synthesizing hs proteins at 25 degrees C. Autoradiographic studies reveal the preferential accumulation of hsp in the nucleoli and hs granules. Furthermore uridine labeling points to the presence of RNA in electron dense particles of both subcellular components. A survey on the state of hsp synthesis and structural binding as well as on the ultrastructural changes is given for 12 selected hs regimes.     

Environmentally-induced fluctuations in year-class strength and their implications for management

Data for river populations of common freshwater species including dace, chub, roach, gudgeon and pike are examined to assess the magnitude of natural density-independent fluctuations in the strength of year-classes. Both in the cyprinid populations and in those of some salmonids, only occasional years give rise to large cohorts of adult fish. Correlations with temperature indicate that for the cyprinid populations these are often years when temperatures are high. In the River Frome, Dorset there is a significant relationship between the growth of O-group dace and subsequent year-class strength. Faster-growing larvae may be better able to avoid predation. Both the habitat and feeding requirements of these young fish are different from those of the adults. A practical approach to improving recruitment in a population of a given species would be to first characterize, and then increase, the availability of suitable habitats and food organisms for the larval stages.     

Immuno-detection of aluminium and aluminium induced conformational changes in calmodulin - implications in Alzheimer's disease

Studies were conducted to ascertain any involvement of free radical mediated prooxidative processes in different brain regions following diazopam administration. A significant decrease in TBA reactive substance formation was observed in cerebral cortex, cerebellum and brain stem regions after single doses of 1.5, 3 and 6 mg/kg b.wt. For further studies rats were given diazepam (i.p.) at 3 mg/kg body weight dose and sacrificed after 1 h to follow changes in the pro/antioxidant status. An enhancement in the TBARS formation was found in the mitochondrial fractions from cerebral cortex and brain stem. This effect was highest in brain stem being 107% as compared to controls. In the post mitochondrial fraction, cerebellum showed 49% enhancement whereas decreased formation of thiobarbituric acid reactive substances was observed in cerebral cortex and brain stem. Isozymes of superoxide dismutase showed a decrease in activity which was region dependent. Even though, total thiols were not significantly altered, free thiols showed depletion in cerebellum (39.8%) and brain stem (50%). Glutathione reductase activity was also decreased in cerebellum and brain stem. The results indicate that a single dose of diazepam causes free radical mediated changes and the modulatory response of antioxidant defences appears to be region specific.     

Herbivore induced plant volatiles: Their role in plant defense for pest management

Plants respond to herbivory through different defensive mechanisms. The induction of volatile emission is one of the important and immediate response of plants to herbivory. Herbivore-induced plant volatiles (HIPVs) are involved in plant communication with natural enemies of the insect herbivores, neighboring plants, and different parts of the damaged plant. Release of a wide variety of HIPVs in response to herbivore damage and their role in plant-plant, plant-carnivore and intraplant communications represents a new facet of the complex interactions among different trophic levels. HIPVs are released from leaves, flowers, and fruits into the atmosphere or into the soil from roots in response to herbivore attack. Moreover, HIPVs act as feeding and/or oviposition deterrents to insect pests. HIPVs also mediate the interactions between the plants and the microorganisms. This review presents an overview of HIPVs emitted by plants, their role in plant defense against herbivores and their implications for pest management.     

Modelling disease spread and control in networks: implications for plant sciences

Networks are ubiquitous in natural, technological and social systems. They are of increasing relevance for improved understanding and control of infectious diseases of plants, animals and humans, given the interconnectedness of today's world. Recent modelling work on disease development in complex networks shows: the relative rapidity of pathogen spread in scale-free compared with random networks, unless there is high local clustering; the theoretical absence of an epidemic threshold in scale-free networks of infinite size, which implies that diseases with low infection rates can spread in them, but the emergence of a threshold when realistic features are added to networks (e.g. finite size, household structure or deactivation of links); and the influence on epidemic dynamics of asymmetrical interactions. Models suggest that control of pathogens spreading in scale-free networks should focus on highly connected individuals rather than on mass random immunization. A growing number of empirical applications of network theory in human medicine and animal disease ecology confirm the potential of the approach, and suggest that network thinking could also benefit plant epidemiology and forest pathology, particularly in human-modified pathosystems linked by commercial transport of plant and disease propagules. Potential consequences for the study and management of plant and tree diseases are discussed.     

Canopy processes: implications for transpiration,interception and splash induced erosion,ultimately for forest management and water resources

Some recent experimental and theoretical developments in research related to tropical forest canopies are reviewed. Deuterium tracing studies in India, which rely on the collection of samples of transpired water from leaves in the canopy, have established the importance of tree size as an index of whole tree transpiration and the use of leaf area, basal area and sapwood area for scaling transpiration from the tree to plot scale is discussed.Experimental studies of the interception loss from tropical trees in Indonesia, India and Sri Lanka have established that conventional interception models of the Rutter type, although adequate for use in temperate climates, are entirely inappropriate for use in the tropics. It is now recognised that the failure of this approach is due to neglect of the process of drop size dependent canopy wetting. The use of rainfall simulators and optical disdrometers in the tropics has demonstrated that to achieve the same degree of canopy wetting upwards of ten times the depth of rainfall may be required for high intensity tropical storms (with large drop sizes) as compared with low intensity, frontal rainfall systems, common in temperate climates. Rainfall simulator studies have also demonstrated that the final degree of wetting is also reduced when vegetation is wetted with drops of large size. These studies have also demonstrated that the drop size of secondary drops falling from vegetation is dependent on the vegetation type and is very much greater for large leafed species such as Tectona grandis as compared with species such as Pinus caribaea with smaller needle formed leaves.The combination, in the tropics, of large drop sizes in the primary rainfall and large drop sizes in secondary drops falling from vegetation helps to explain why in absolute and relative terms interception loss from tropical trees is less than that in temperate climates. The recognition that drop size generation is related to vegetation type has important implications for splash induced erosion and the choice of tree species on soils subject to erosion.Knowledge of forest canopy processes is now leading to a better appreciation of the hydrological, meteorological and water resource impacts of forests. The impact of trees in Amazonia and the Sahel on climate and trees in the Zambezi basin on water resources is discussed. New spatially distributed modelling methods which are being incorporated within Decision Support Systems for forest and water resource management, which also take account of ecological and socio-economic objectives, are also outlined.     

Effects of soil management practices and irrigation on plant water relations and productivity of chestnut stands under Mediterranean conditions

The effects of different soil management practices and irrigation on plant water relations, physiological response and productivity of chestnut stands in Northeastern Portugal were assessed during four growing seasons (2003 to 2006). Treatments were: conventional soil tillage up to 15–20 cm depth with a tine cultivator thrice a year (CT); no tillage with spontaneous herbaceous vegetation (NV); no tillage with rainfed seeded pasture (NP); and no tillage with irrigated seeded pasture (NIP). Results suggest that soil water availability was the most critical parameter for chestnut productivity over the study period. In all treatments, high predawn leaf water potentials (-0.40 to -0.55 MPa) were observed during the dry seasons of 2003, 2004 and 2006, showing no critical conditions for plant productivity, which is ascribed to water availability in deep soil layers. In contrast, in 2005, an extremely dry year, water potentials decreased and varied from -1.46 to -1.72 MPa in late summer, showing unfavourable conditions for nut production. Maintenance of spontaneous herbaceous vegetation without irrigation enhanced productivity of chestnut stands as compared with the conventional tillage system and the no tillage system with seeded pasture. Productivity in the soil watering system (NIP treatment) was not significantly different from that observed in the NV treatment. Therefore, studies on the irrigation strategy should be developed, in order to increase its efficiency especially in stands with young trees.     

Vertebrate browsing impacts in a threatened montane plant community and implications for management

Montane ecosystems are vulnerable to the removal of vegetation cover through browsing by feral or native vertebrate fauna. The highest elevated peaks of the Stirling Range in Western Australia provide habitat for an endemic plant community, Critically Endangered due to plant disease, frequent fire and an emerging threat of browsing by vertebrate fauna. Survey and camera trapping confirmed the herbivorous feral Rabbit (Oryctolagus cuniculus) and native Quokka (Setonix brachyurus) are present. Dietary analysis through faecal examination revealed contrasting diets and implicates native rather than feral species as responsible for impacts on dicotyledonous species, and in particular those of conservation significance. Exclosure experiments conducted over 1 year revealed significant changes in abundance, cover and height of perennial herbs and an increase in growth and/or reproduction of four threatened endemic plants. Detrimental impacts caused by native browsing fauna are not unprecedented and may be attributed to disequilibria in ecosystem processes due to multiple interacting threats. Montane ecosystems may be particularly vulnerable to browsing due to their naturally slow recovery after disturbance and browsing may also create environmental conditions more conducive to plant disease. For plant species with critically low population numbers, the impact of browsing poses a threat to population persistence and undermines investment into other conservation recovery actions. For effective management, it is critical to determine the relative impact of browsing species present. Where native species are implicated, the physical protection of high value assets in wire exclosures is warranted to complement other recovery actions and ensure effective species and community recovery.     

Effect of acidic electrolyzed water on the viability of bacterial and fungal plant pathogens and on bacterial spot disease of tomato

Acidic electrolyzed water (AEW), known to have germicidal activity, was obtained after electrolysis of 0.045% aqueous solution of sodium chloride. Freshly prepared AEW (pH 2.3-2.6, oxidation-reduction potential 1007-1025 mV, and free active chlorine concentration 27-35 ppm) was tested in vitro and (or) on tomato foliage and seed surfaces for its effects on the viability of plant pathogen propagules that could be potential seed contaminants. Foliar sprays of AEW were tested against bacterial spot disease of tomato under greenhouse and field conditions. The viability of propagules of Xanthomonas campestris pv. vesicatoria (bacterial spot pathogen), Streptomyces scabies (potato scab pathogen), and Fusarium oxysporum f.sp. lycopersici (root rot pathogen) was significantly reduced 4-8 log units within 2 min of exposure to AEW. Immersion of tomato seed from infected fruit in AEW for 1 and 3 min significantly reduced the populations of X. campestris pv. vesicatoria from the surface of the seed without affecting seed germination. Foliar sprays of AEW reduced X. campestris pv. vesicatoria populations and leaf spot severity on tomato foliage in the greenhouse. In the field, multiple sprays of AEW consistently reduced bacterial spot severity on tomato foliage. Disease incidence and severity was also reduced on fruit, but only in 2003. Fruit yield was either enhanced or not affected by the AEW sprays. These results indicate a potential use of AEW as a seed surface disinfectant or contact bactericide.     

再生水灌溉对草坪根际可培养细菌组成影响

【目的】为了了解再生水灌溉对草坪根际可培养细菌群落组成的影响,【方法】采用稀释平板法,对北京市陶然亭公园内再生水灌区及其对照自来水灌区草坪根际细菌进行了分离,并对其16S rDNA序列进行了分析。【结果】16S rDNA序列分析表明自来水样品分离得到的菌落分属于15个属的20个种,而再生水样品分离得到的菌落分属于18个属的24个种。自来水和再生水灌区草坪根际细菌主要包括变形菌门α亚群(Alphaproteobacteria,分别为9.7%和13.4%)、变形菌门β亚群(Betaproteobacteria,分别为8.1%和12.3%)、变形菌门γ亚群(Gammaproteobacteria,分别为17.9%和42.0%)、拟杆菌门(Bacteroidetes,分别为13.0%和2.9%)、厚壁菌门(Firmicutes,分别为23.6%和10.1%)和放线菌门(Actinobacteria,分别为27.6%和19.6%)其中,芽孢杆菌属(Bacillus sp.)是自来水灌区草坪根际优势菌属(23.6%),而不动杆菌属(Acinetobacter sp.)是再生水灌区根际优势菌属(17.4%)。从不同类群优势菌属看,除变形菌门γ亚群受再生水影响优势菌属在两灌区表现出一定的差异外,其余各亚群优势菌属均未受再生水影响,其中,不动杆菌属是再生水灌区变形菌门γ亚群的优势菌属(41.3%),肠杆菌属(Enterobacter sp.)是自来水灌区变形菌门γ亚群的优势菌属(45.4%)。【结论】这表明,再生水灌溉未改变细菌群落组成类型,但改变了不同类型多度分布状况。具体表现为优势种多度值增加及部分非优势种有无。再生水灌区特有机会性致病菌、植物致病菌和重金属耐性细菌的出现表明再生水灌溉中病原微生物及重金属的控制工作还有待于进一步严格。     

Properties of bacterial endophytes and their proposed role in plant growth

Bacterial endophytes live inside plants for at least part of their life cycle. Studies of the interaction of endophytes with their host plants and their function within their hosts are important to address the ecological relevance of endophytes. The modulation of ethylene levels in plants by bacterially produced 1-aminocyclopropane-1-carboxylate deaminase is a key trait that enables interference with the physiology of the host plant. Endophytes with this capacity might profit from association with the plant, because colonization is enhanced. In turn, host plants benefit by stress reduction and increased root growth. This mechanism leads to the concept of 'competent' endophytes, defined as endophytes that are equipped with genes important for maintenance of plant-endophyte associations. The ecological role of these endophytes and their relevance for plant growth are discussed here.