Symbiotic partner specificity and dependency of two gobies (<Emphasis Type="Italic">Apocryptodon punctatus</Emphasis> and <Emphasis Type="Italic">Acentrogobius</Emphasis> sp. A) and four alpheid shrimps inhabiting the temperate estuary of southern Japan

We collected two gobies, Apocryptodon punctatus and Acentrogobius sp. A, and four alpheid shrimps from an estuary in southern Japan, to identify the symbiotic shrimps with gobies and to understand their partner specificity and dependency. Analysis based on generalized linear models identified two specific partners for each goby. A. punctatus frequently coexisted with partners and showed similar habitats, suggesting that this goby might be an obligate mutualist. Acentrogobius sp. A had lower rates of coexistence and appeared in habitats different from one of its partners, suggesting that this goby might be a facultative mutualist.     

Genome-wide identification and expression analysis of the molecular chaperone binding protein <Emphasis Type="Italic">BiP</Emphasis> genes in <Emphasis Type="Italic">Citrus</Emphasis>

Here, we report for the first time the genome-wide identification and expression analysis of the molecular chaperone BiP genes in Citrus. Six genes encoding the conserved protein domain family GPR78/BiP/KAR2 were identified in the genome of Citrus sinensis and C. clementina. Two of them, named here as CsBiP1 and CsBiP2, were classified as true BiPs based on their deduced amino acid sequences. Alignment of the deduced amino acid sequences of CsBiP1 and CsBiP2 with BiP homologs from soybean and Arabidopsis showed that they contain all the conserved functional motifs of BiPs. Analysis of the promoter region of CsBiPs revealed the existence of cis-acting regulatory sequences involved in abiotic, heat-shock, and endoplasmic reticulum (ER) stress responses. Publicly available RNA-seq data indicated that CsBiP1 is abundantly expressed in leaf, flower, fruit, and callus, whereas CsBiP2 expression is rarely detected in any tissues under normal conditions. Comparative quantitative real-time PCR (qPCR) analysis of expression of these genes between C. sinensis grafted on the drought-tolerant “Rangpur” lime (C. limonia) and -sensitive “Flying Dragon” trifoliate orange (Poncirus trifoliata) rootstocks showed that CsBiP1 was upregulated by drought stress on the former but downregulated on the latter, whereas the CsBiP2 mRNA levels were downregulated on drought-stressed “Flying Dragon,” but remained constant on “Rangpur.” CsBiP2 upregulation was only observed in C. sinensis seedlings subjected to osmotic and cold treatments. Taken together, these results indicate the existence of two highly conserved BiP genes in Citrus that are differentially regulated in the different tissues and in response to abiotic stresses.     

Ecological niche differentiation between native and non-native shrimps in the northern Baltic Sea

Invasions of non-native species are modifying global biodiversity but the ecological mechanisms underlying invasion processes are still not well understood. A degree of niche separation of non-native and sympatric native species can possibly explain the success of novel species in their new environment. In this study, we quantified experimentally and in situ the environmental niche space of caridean shrimps (native Crangon crangon and Palaemon adspersus, non-native Palaemon elegans) inhabiting the northern Baltic Sea. Field studies showed that the non-native P. elegans had wider geographical range compared to native species although the level of habitat specialization was similar in both Palaemon species. There were clear differences in shrimp habitat occupancy with P. elegans inhabiting lower salinity areas and more eutrophicated habitats compared to the native species. Consequently, the non-native shrimp has occupied large areas of the northern Baltic Sea that were previously devoid of the native shrimps. Experiments demonstrated that the non-native shrimp had higher affinity to vegetated substrates compared to native species. The study suggests that the abilities of the non-native shrimp to thrive in more stressful habitats (lower salinity, higher eutrophication), that are sub-optimal for native shrimps, plausibly explain the invasion success of P. elegans.     

The seasonal dynamics and distribution of burrowing shrimp larvae of the infraorders Gebiidea and Axiidea in Amursky and Ussuriysky Bays,the Sea of Japan

The species composition, period of occurrence, density, and distribution of the larvae of burrowing shrimp of the infraorders Gebiidea and Axiidea in Amursky and Ussuriysky bays (Sea of Japan) were studied in May–October 2008. Larvae of eight species of this group were found in plankton samples. The period of occurrence of larvae in the bays was longest in Upogebia major and Nihonotrypaea petalura (4 and 3 months, respectively). Zoeae of the rest of the species occurred in the plankton for no more than 2 months, indicating a single larval hatching during the reproductive season. The average density of gebiidean and axiidean larvae was low and reached the highest values (4 ind./m³) in June in Amursky Bay and in July in Ussuriysky Bay; their contribution to the total density of decapod larvae was not above 18%. In general, larvae of the family Upogebiidae dominated in Amursky Bay and larvae of the Callianassidae were predominant in Ussuriysky Bay. The zoeae of U. major (up to 37 ind./m³) and Nihonotrypaea makarovi (up to 46 ind./m³) were most numerous. Larvae of the family Axiidae were recorded only in very low numbers in both bays.     

Acaricidal properties of ylang-ylang oil and star anise oil against nymphs of <Emphasis Type="Italic">Ixodes ricinus</Emphasis> (Acari: Ixodidae)

Understanding and responding to the ecological, social and economic conditions that facilitate disease emergence and transmission represents a substantial challenge for epidemiologists and health professionals. In this article we integrate knowledge about the human and the vector population, to provide a context from which to examine the underlying causal factors of D. marginatus-borne diseases emergence in the study area. Within this framework we analyse the biotic and abiotic factors that drive D. marginatus population dynamics and the role of its typical host for dispersal. These investigations suggest that D. marginatus is a tick species prone to spatially overlap its presence with human population presence. Then we consider the public health implications for the residents, when simply carrying out trivial outdoor activities may increase the risk to contact an infected tick.     

Inconsistency between salinity preference and habitat salinity in euryhaline gobiid fishes in the Isazu River,northern Kyoto Prefecture

Adults of three amphidromous gobiid fishes, Tridentiger brevispinis, Rhinogobius similis, and Gymnogobius petschiliensis, are euryhaline and generally found in both freshwater (FW) and brackish water (BW) areas. The determining factors for their choice of habitat with different salinity have never been explored. In this study, a salinity-choice experiment was conducted using the above species captured in the FW region of the Isazu River, northern Kyoto Prefecture. For comparison, the fluvial goby Rhinogobius flumineus and BW-acclimated G. petschiliensis were also tested. We found that the three euryhaline species, including BW-acclimated G. petschiliensis, preferred BW to FW, whereas R. flumineus preferred FW. These results suggest that salinity preference did not determine habitat in these euryhaline gobiids, which were found in FW. Surveys were also conducted focusing on competitors and predators in their potential habitats. Thus, net sampling captured many other gobiid species, and an environmental DNA method detected Japanese temperate bass, a voracious predator, in the estuarine areas, suggesting that biotic factors are major determinants in the distribution of euryhaline species.     

Abiotic stress,competition, and the distribution of the native annual grass <Emphasis Type="Italic">Vulpia microstachys</Emphasis> in a mosaic environment

We analyzed how abiotic stress and competition interact to control the abundance and performance of the native annual grass Vulpia microstachys (Lonard and Gould; Poaceae) in a heterogeneous environment. At our study site, V. microstachys grows in nonserpentine grasslands dominated by tall invasive grasses, serpentine meadows dominated by short native forbs, and rocky serpentine slopes with a sparse native herb cover. We hypothesized that these three intermixed habitats acted as a gradient of increasing abiotic stress and decreasing aboveground competition, respectively. We further expected that the abundance and performance of V. microstachys would be highest in serpentine meadows, where neither aboveground competition nor abiotic stress were maximal. Soil and biotic variables showed roughly the expected patterns, but V. microstachys did not show the predicted peak in the middle of the gradient. Emergence, seedling survival, and abundance of V. microstachys were highest, and growth and seed production of survivors were lowest, on rocky serpentine slopes. Field experiments revealed that removal of competitors enhanced all demographic parameters, but only in the more productive habitats. An interaction between seed source and habitat, affecting emergence and survival, indicated ecotypic adaptation to the rocky serpentine slope habitat. We conclude that individual variation caused by local adaptation and phenotypic plasticity allows V. microstachys to survive in widely different habitats, none of which are optimal, resulting in considerable variation in demography.     

Identification and comparative analysis of <Emphasis Type="Italic">Brassica juncea</Emphasis> pathogenesis-related genes in response to hormonal,biotic and abiotic stresses

Pathogenesis-related proteins (PRs) are the antimicrobial proteins which are commonly used as signatures of defense signaling pathways and systemic acquired resistance. However, in Brassica juncea most of the PR proteins have not been fully characterized and remains largely enigmatic. In this study, full-length cDNA sequences of SA (PR1, PR2, PR5) and JA (PR3, PR12 and PR13) marker genes were isolated from B. juncea and were named as BjPR proteins. BjPR proteins showed maximum identity with known PR proteins of Brassica species. Further, expression profiling of BjPR genes were investigated after hormonal, biotic and abiotic stresses. Pre-treatment with SA and JA stimulators downregulates each other signature genes suggesting an antagonistic relationship between SA and JA in B. juncea. After abscisic acid (ABA) treatment, SA signatures were downregulated while as JA signature genes were upregulated. During Erysiphe cruciferarum infection, SA- and JA-dependent BjPR genes showed distinct expression pattern both locally and systemically, thus suggesting the activation of SA- and JA-dependent signaling pathways. Further, expression of SA marker genes decreases while as JA-responsive genes increases during drought stress. Interestingly, both SA and JA signature genes were induced after salt stress. We also found that BjPR genes displayed ABA-independent gene expression pattern during abiotic stresses thus providing the evidence of SA/JA cross talk. Further, in silico analysis of the upstream regions (1.5 kb) of both SA and JA marker genes showed important cis-regulatory elements related to biotic, abiotic and hormonal stresses.     

Trait convergence and diversification arising from a complex evolutionary history in Hawaiian species of <Emphasis Type="Italic">Scaevola</Emphasis>

Species variation in functional traits may reflect diversification relating to convergence and/or divergence depending on environmental pressures and phylogenetic history. We tested trait-environment relationships and their basis in finer-scale evolutionary processes among nine extant Hawaiian species of Scaevola L. (Goodeniaceae), a taxon with a complex history of three independent colonizations by different phylogenetic lineages, parallel ecological specialization, and homoploid hybridization events in Hawai‘i. Using a wild population for each species, we evaluated traits related to plant function (morphology, leaf and wood anatomy, nutrient and carbon isotope composition). Hawaiian Scaevola species were distributed across coastal, dry forest and wet forest environments; multivariate environmental analysis using abiotic and biotic factors further showed that species from distantly related lineages inhabited similar environments. Many traits correlated with environment (based on the multivariate environmental analysis), considering both distantly related species and more closely related species. Scaevola species within shared habitats generally showed trait convergence across distantly related lineages, particularly among wet forest species. Furthermore, trait diversification through divergence was extensive among closely related Scaevola species that radiated into novel environments, especially in plant morphology and traits affecting water relations. Homoploid hybrid-origin species were “intermediate” compared to their ancestral parent species, and possessed trait combinations relevant for their current habitat. The diversity in functional traits reflected strong influences of both ecology and evolutionary history in native Hawaiian Scaevola species, and trait correspondence with environment was due to the combination of multiple processes within the taxon: trait pre-adaptation and filtering, evolutionary convergence, divergence, and hybridization.     

Predation risk influences feeding rates but competition structures space use for a common Pacific parrotfish

Not all hosts, communities or environments are equally hospitable for parasites. Direct and indirect interactions between parasites and their predators, competitors and the environment can influence variability in host exposure, susceptibility and subsequent infection, and these influences may vary across spatial scales. To determine the relative influences of abiotic, biotic and host characteristics on probability of infection across both local and estuary scales, we surveyed the oyster reef-dwelling mud crab Eurypanopeus depressus and its parasite Loxothylacus panopaei, an invasive castrating rhizocephalan, in a hierarchical design across >900 km of the southeastern USA. We quantified the density of hosts, predators of the parasite and host, the host’s oyster reef habitat, and environmental variables that might affect the parasite either directly or indirectly on oyster reefs within 10 estuaries throughout this biogeographic range. Our analyses revealed that both between and within estuary-scale variation and host characteristics influenced L. panopaei prevalence. Several additional biotic and abiotic factors were positive predictors of infection, including predator abundance and the depth of water inundation over reefs at high tide. We demonstrate that in addition to host characteristics, biotic and abiotic community-level variables both serve as large-scale indicators of parasite dynamics.     

Performance of two alpine plant species along environmental gradients in an alpine meadow ecosystem in central Tibet

Understanding how biotic interactions and abiotic conditions affect plant performance is important for predicting changes in ecosystem function and services in variable environments. We tested how performances of Astragalus rigidulus and Potentilla fruticosa change along gradients of biotic interactions (represented by plant species richness, abundance of the dominant plant species Kobresia pygmaea, and herbivory intensity) and abiotic conditions (represented by elevation, aspect, and slope steepness) across a semi-arid landscape in central Tibet. Redundancy analyses showed that the biotic variables explained 30 and 39 % of the variation in overall performance of A. rigidulus (P = 0.03) and P. fruticosa (P = 0.01), respectively. Abiotic variables did not contribute significantly to variation among A. rigidulus populations. Plant size decreased with species richness in both species and was larger on south- rather than north-facing slopes. Reproductive effort for both species was significantly negatively related to the abundance of K. pygmaea and both species had larger reproductive effort on south- rather than north- and west-facing slopes. The proportion of biomass allocated to sexual reproduction in P. fruticosa was negatively correlated with K. pygmaea abundance and herbivory intensity. The population density of P. fruticosa was positively related to elevation, species richness, and K. pygmaea abundance. We conclude that plant performance at a local scale was more strongly related to biotic than abiotic conditions, but different components of plant performance responded differently to predictor variables and the responses were species-specific. These findings have important implications for rangeland management under changing environmental conditions.     

Induction of two cyclotide-like genes <Emphasis Type="Italic">Zmcyc1</Emphasis> and <Emphasis Type="Italic">Zmcyc5</Emphasis> by abiotic and biotic stresses in <Emphasis Type="Italic">Zea mays</Emphasis>

Cyclotides are small plant disulfide-rich and cyclic proteins with a diverse range of biological activities. Cyclotide-like genes show key sequence features of cyclotides and are present in the Poaceae. In this study the cDNA of the nine cyclotide-like genes were cloned and sequenced using 3′RACE from Zea mays. The gene expression of two of these genes (Zmcyc1 and Zmcyc5) were analyzed by real-time PCR in response to biotic (Fusarium graminearum, Ustilago maydis and Rhopalosiphum maydis) and abiotic (mechanical wounding, water deficit and salinity) stresses, as well as in response to salicylic acid and methyl jasmonate elicitors to mimic biotic stresses. All isolated genes showed significant similarity to other cyclotide-like genes and were classified in two separate clusters. Both Zmcyc1 and Zmcyc5 were expressed in all studied tissues with the highest expression in leaves and lowest expression in roots. Wounding, methyl jasmonate and salicylic acid significantly induced the expression of Zmcyc1 and Zmcyc5 genes, but the higher expression was observed for Zmcyc1 as compared with Zmcyc5. Expression levels of these two genes were also induced in inoculated leaves with F. graminearum, U. maydis and also in response to insect infestation. In addition, the 1000-base-pairs (bp) upstream of the promoter of Zmcyc1 and Zmcyc5 genes were identified and analyzed using the PlantCARE database and consequently a large number of similar biotic and abiotic cis-regulatory elements were identified for these two genes.     

Larvae of three sea spider species of the genus <Emphasis Type="Italic">Nymphon</Emphasis> (Arthropoda: Pycnogonida) from the White Sea

Larvae of three Nymphon species are described. For Nymphon brevirostre Hodge, 1863 and Nymphon micronyx Sars, 1888 protonymphon larvae are examined, larvae of N. micronyx have been studied for the first time. The fine external morphology of larvae is studied in detail using SEM methods; the internal structure of N. brevirostre protonymphon is additionally described. SEM data on external morphology and fine surface structures are given for several postembryonic stages of Nymphon grossipes Fabricius, 1780. Different types of postembryonic development are revealed in examined Nymphon species. N. brevirostre and N. micronyx have a “typical protonymphon” developmental pathway. A special developmental pathway named “lecithotrophic protonymphon” is suggested for N. grossipes and other Nymphonidae having large yolky eggs.     

Taxonomic implications of the morphological and genetic variation of cultivated and domesticated populations of the <Emphasis Type="Italic">Agave angustifolia</Emphasis> complex (Agavoideae,Asparagaceae) in Oaxaca,Mexico

The Agave angustifolia complex, distributed from Mexico to Costa Rica, comprises four species and five varieties, including three species used for mescal production. The complex is represented in the Mexican state of Oaxaca by two wild taxa, A. angustifolia var. angustifolia and A. angustifolia var. rubescens, the cultivated form A. angustifolia “Espadín” and the partially cultivated species A. rodacantha. The aims of this study were to investigate the morphological and genetic variation of the A. angustifolia complex in the state of Oaxaca and to identify traits useful for taxonomic delimitation. Four wild and three cultivated populations of A. angustifolia from Oaxaca, one population of A. tequilana from Guanajuato and one population of A. angustifolia from Sonora were sampled for morphological, genetic and cytometric analyses. We showed that cultivated populations of A. angustifolia “Espadin,” A. rhodacantha and A. tequilana could be clearly differentiated from wild populations. Furthermore, the domesticated populations of A. angustifolia, known locally as “Espadin,” had a higher ploidy level and lower genetic variation than their related wild populations. The population of A. angustifolia from Sonora could be recognized as a different entity. Populations of A. rhodacantha need to be studied throughout their entire distribution area to further evaluate their taxonomic delimitation.     

Habitat fragmentation provides a competitive advantage to an invasive tree squirrel, <Emphasis Type="Italic">Sciurus carolinensis</Emphasis>

Changes in the composition of biological communities can be elicited by competitive exclusion, wherein a species is excluded from viable habitat by a superior competitor. Yet less is known about the role of environmental change in facilitating or mitigating exclusion in the context of invasive species. In these situations, decline in a native species can be due to the effects of habitat change, or due to direct effects from invasive species themselves. This is summarized by the “driver-passenger” concept of native species loss. We present a multi-year study of tree squirrels that tested the hypothesis that tree canopy fragmentation, often a result of human development, influenced the replacement of native western gray tree squirrels (Sciurus griseus) by non-native eastern gray tree squirrels (Sciurus carolinensis). We tested this hypothesis along a continuum of invasion across three study sites in central California. We found that within the developed areas of the University of California at Santa Cruz campus and city of Santa Cruz, S. carolinensis excluded S. griseus from viable habitat. The competitive advantage of S. carolinensis may be due to morphological and/or behavioral adaptation to terrestrial life in fragmented hardwood forests. We classify S. carolinensis as a “driver” of the decline of native S. griseus in areas with high tree canopy fragmentation. Future habitat fragmentation in western North America may result in similar invasion dynamics between these species. Our study warrants consideration of existing and predicted interactions between potentially invasive species that co-occur with native species where land use change is proposed.     

Findings of the leaf beetles <Emphasis Type="Italic">Chrysolina tundralis</Emphasis> and <Emphasis Type="Italic">Chrysolina roddi</Emphasis> (Coleoptera,Chrysomelidae) in the middle part of European Russia

Two species of leaf beetles, Chrysolina tundralis and Ch. roddi, were found in the “Galich’ya Gora” Nature Reserve (the middle part of European Russia), 1200 and 700 km, respectively, from the main part of the ranges of these species. Adults and larvae of Ch. tundralis feed on Lamium purpureum, those of Ch. roddi feed on Seseli intermedia there. Diagnostic characters of the adults of both species are reported.     

Uncorrelated mistletoe infection patterns and mating success with local host specialization in <Emphasis Type="Italic">Psittacanthus calyculatus</Emphasis> (Loranthaceae)

Mistletoe infection between conspecific and interspecific hosts can be restricted by seed dispersal, host-mistletoe compatibility and abiotic factors, yet no studies have linked mistletoe infection patterns and pollination together for understanding mistletoe distribution at a local scale. Psittacanthus calyculatus (Loranthaceae) is a hemiparasitic plant with a broad host range across its geographic distribution. The potential for local host adaptation has been shown using cross-inoculation experiments, in which plants of mistletoe seeds collected from a given host are more likely to survive when they are inoculated on conspecific host trees compared with those inoculated on other host provenances. Here we evaluate host adaptation by describing the local patterns of infection (prevalence and intensity) of P. calyculatus mistletoes on three native host tree species (Alnus acuminata, Quercus crassipes, Salix bonplandiana) and one introduced species (Populus alba) and carried out cross-pollination experiments to examine how pollination affects infection patterns of different host species. Mistletoe infection prevalence (proportion of infection) and infection intensity (mean number of mistletoes per tree) were in general disproportional with respect to the availability of native host tree species but higher to that of non-native host tree species. Cross-pollination experiments showed higher mating success on the native host tree species, suggesting higher local adaptation to specially Q. crassipes. The observed spatial distribution of host tree species and mistletoe infection along with the non-random mating could contribute to local genetic structuring of mistletoe populations.