Distinct bacterial communities across a gradient of vegetation from a preserved Brazilian Cerrado

The Cerrado biome in the Sete Cidades National Park, an Ecological Reserve in Northeastern Brazil, has conserved its native biodiversity and presents a variety of plants found in other savannas in Brazil. Despite this finding the soil microbial diversity and community structure are poorly understood. Therefore, we described soil bacterial diversity and distribution along a savanna vegetation gradient taking into account the prevailing environmental factors. The bacterial composition was retrieved by sequencing a fragment of the 16S ribosomal RNA gene. The bacterial operational taxonomic units (OTUs) were assigned to 37 different phyla, 96 classes, and 83 genera. At the phylum level, a core comprised by Proteobacteria, Acidobacteria, Actinobacteria, Firmicutes, Verrucomicrobia and Planctomycetes, was detected in all areas of Cerrado. ‘Cerrado stricto sensu’ and ‘Cerradao’ share more similarities between edaphic properties and vegetation and also present more similar bacterial communities, while ‘Floresta decidual’ and ‘Campo graminoide’ show the largest environmental differences and also more distinct bacterial communities. Proteobacteria (26%), Acidobacteria (21%) and Actinobacteria (21%) were the most abundant phyla within the four areas. All the samples present similar bacteria richness (alpha diversity) and the observed differences among them (beta diversity) were more related to the abundance of specific taxon OTUs compared to their presence or absence. Total organic C, N and P are the main abiotic factors structuring the bacterial communities. In summary, our findings show the bacterial community structure was clearly different across the Cerrado gradient, but that these environments share a bacterial phylum-core comprising Proteobacteria, Acidobacteria, Actinobacteria, Verrucomicrobia and Planctomycetes with other Brazilian savannas.     

The physiological light response of two tree species across a hydrologic gradient in Brazilian savanna (Cerrado)

Tropical savanna ecosystems are extremely diverse and important for global carbon storage. In the state of Mato Grosso, tropical savanna (locally known as the Cerrado), turns from well-drained, upland areas into seasonally flooded areas within the Pantanal; however, the Cerrado and the Pantanal share many common tree species, such as Vochysia divergens, a flood-adapted tree native to the Amazon Basin, and Curatella americana, a tree, adapted native to the welldrained the Cerrado. We measured the photosynthetic light response of these species in the the Cerrado and the Pantanal over a 1-year period to determine how these species physiologically adjust to these hydrologically distinct habitats. We hypothesized that neither species would experience a significant decline in maximum, light-saturated photosynthetic rate (P _max) in their naturalized habitat. Physiological performance of each species was generally higher in the habitat that they were adapted to; however, our data indicated that both species have broad tolerance for seasonal variations in hydrology, allowing them to tolerate seasonal drought during the dry season in the Cerrado, and seasonal flooding during the wet season in the Pantanal. In V. divergens, flexible water-use efficiency, higher specific leaf area (SLA), and a greater ability to adjust mass-based P _max (P _max,m) to variations in leaf N and P concentration appeared to be key traits for withstanding prolonged drought in the Cerrado. In C. americana, increases in SLA and higher nutrient-use efficiency appeared to be important in maintaining high rates of P _max,m in the seasonally flooded Pantanal. Flexibility in physiology and resource-use efficiency may allow these species to survive and persist in habitats with broadly differing hydrology.     

Environmental correlates of anuran beta diversity in the Brazilian Cerrado

Evolutionary processes are known to influence contemporary patterns of biological diversity, yet disentangling the effects of current and historical drivers of biodiversity patterns remain challenging. We use spatial analyses of community dissimilarity to generate hypotheses about the current and historical processes underlying patterns of beta diversity in anuran species in the Brazilian Cerrado. Specifically, we use a generalized dissimilarity modeling (GDM) approach to model compositional dissimilarity of anuran species and endemics as a function of geographic separation and local (within‐Cerrado) environmental conditions. To gain insight about potential historical processes, we incorporate information from biomes adjacent to the Cerrado to investigate whether environmental conditions in neighboring areas can help explain patterns of beta diversity within the Cerrado. Patterns of anuran beta diversity of both endemics and all species in the Cerrado appear to be strongly influenced by local environmental gradients, with elevation as one of the most important variables in all models. However, in models using endemic species only, environmental conditions of adjacent biomes were related to beta‐diversity patterns, and more strongly so, than to total species models. These results suggest that phylogenetic niche conservatism within species groups that invaded the Cerrado from adjacent biomes may cause these species to be restricted to environmental conditions within the Cerrado that are most similar to the conditions in the adjacent biome where they originated. Time‐calibrated phylogenies of Cerrado endemics and studies of ancestral and current ranges of Cerrado species are needed to test this hypothesis.     

Biological functioning of Brazilian Cerrado soils under different vegetation types

Aims

Over a 2?year period, we compared the soil biological functioning (SBF) of Cerrado physiognomies ranging from grassland-savannic to forest formations, sampling in the middle of the dry and rainy seasons.

Methods

Soil samples were collected at two depths (0 to 5?cm and 5 to 20?cm) under the following physiognomies: Campo Sujo, Cerrado Ralo, Cerrado sensu stricto, Cerrad?o and Mata de Galeria. The SBF was represented by the simultaneous analyses of microbial biomass carbon, soil basal respiration and the activity of enzymes linked to the C, P and S cycles (β-glucosidase, acid phosphatase and arylsulfatase, respectively).

Results

The results demonstrated that Cerrado physiognomies are a major determinant of SBF patterns. The forest-like physiognomies (Mata de Galeria and Cerrad?o) presented the highest biomass and activity compared to the grassland (Campo Sujo) and savanna physiognomies (Cerrado Ralo and Cerrado sensu stricto). These differences were more evident in the topsoil layer (0 to 5?cm), and the seasonal effect on the SBF of the Mata de Galeria and Cerrad?o was more pronounced than on the other physiognomies.

Conclusions

These results provide a benchmark for evaluating changes in SBF and related processes in Cerrado areas due to shifts toward agriculture and cattle production.     

Land use modifies Odonata diversity in streams of the Brazilian Cerrado

The presence of riparian vegetation provides microclimatic regulation of stream conditions [e.g. luminosity (lux), air temperature (°C) and relative humidity (%)], which varies naturally throughout the day. These variables explain the diurnal behaviour patterns of ectotherms such as Odonata in natural areas. However, human land uses (e.g. pastures) modify the abiotic conditions of riparian environments, favouring the presence of disturbance-tolerant species. In this context, we assess relationships between riparian land use (control streams-natural areas and pasture), abiotic conditions habitat integrity index (in control and pastures streams), (air temperature, luminosity and humidity in control streams), and Odonata diversity (between pasture and control streams and throughout the time of day) in Brazilian savannah (Cerrado) streams. First, the control streams had higher habitat integrity index than pasture. Higher abundance and difference in composition of Odonata species were observed in streams surrounded by pasture relative to natural areas. The conversion of natural areas to pasture near streams was also accompanied by an increase in overall body size of Odonata species. Odonata species richness and abundance in natural areas varied throughout the day, but peaked around 12:00 h, coinciding with changes in air temperature and luminosity. Our study highlights that changes in the physical characteristics of streams through conversion of natural habitats to pasture will change environmental conditions and act as a filter on the distribution and persistence of Odonata species in Cerrado streams.     

Resource availability controls fungal diversity across a plant diversity gradient

Despite decades of research, the ecological determinants of microbial diversity remain poorly understood. Here, we test two alternative hypotheses concerning the factors regulating fungal diversity in soil. The first states that higher levels of plant detritus production increase the supply of limiting resources (i.e. organic substrates) thereby increasing fungal diversity. Alternatively, greater plant diversity increases the range of organic substrates entering soil, thereby increasing the number of niches to be filled by a greater array of heterotrophic fungi. These two hypotheses were simultaneously examined in experimental plant communities consisting of one to 16 species that have been maintained for a decade. We used ribosomal intergenic spacer analysis (RISA), in combination with cloning and sequencing, to quantify fungal community composition and diversity within the experimental plant communities. We used soil microbial biomass as a temporally integrated measure of resource supply. Plant diversity was unrelated to fungal diversity, but fungal diversity was a unimodal function of resource supply. Canonical correspondence analysis (CCA) indicated that plant diversity showed a relationship to fungal community composition, although the occurrence of RISA bands and operational taxonomic units (OTUs) did not differ among the treatments. The relationship between fungal diversity and resource availability parallels similar relationships reported for grasslands, tropical forests, coral reefs, and other biotic communities, strongly suggesting that the same underlying mechanisms determine the diversity of organisms at multiple scales.     

Amblyomma sculptum: genetic diversity and rickettsias in the Brazilian Cerrado biome

Amblyomma sculptum (Ixodida: Ixodidae) Berlese, 1888 is the most important tick vector in Brazil, transmitting the bioagent of the most severe form of spotted fever (SF) in part of the Cerrado (in the states of Minas Gerais and São Paulo). In another part of the Cerrado (Central‐West region of Brazil), a milder form of SF has been recorded. However, neither the rickettsia nor the vector involved have been characterized. The aim of the current study was to analyse genetic variation and the presence of rickettsia in A. sculptum in Cerrado, from silent areas and with the milder form of SF. Samples were subjected to DNA extraction, amplification and sequencing of 12S rDNA, cytochrome oxidase subunit II and D‐loop mitochondrial genes (for tick population analyses), and gltA, htrA, ompA and gene D (sca4) genes for rickettsia researches. Exclusive haplotypes with low frequencies, high haplotype diversity and low nucleotide diversity, star‐shaped networks and significant results in neutrality tests indicate A. sculptum population expansions in some areas. Rickettsia amblyommatis, Candidatus Rickettsia andeanae and Rickettsia felis were detected. The A. sculptum diversity is not geographically, or biome delimited, pointing to a different potential in vector capacity, possibly associated with differing tick genetic profiles.     

Seasonal leaf dynamics across a tree density gradient in a Brazilian savanna

Interactions between trees and grasses that influence leaf area index (LAI) have important consequences for savanna ecosystem processes through their controls on water, carbon, and energy fluxes as well as fire regimes. We measured LAI, of the groundlayer (herbaceous and woody plants <1-m tall) and shrub and tree layer (woody plants >1-m tall), in the Brazilian cerrado over a range of tree densities from open shrub savanna to closed woodland through the annual cycle. During the dry season, soil water potential was strongly and positively correlated with grass LAI, and less strongly with tree and shrub LAI. By the end of the dry season, LAI of grasses, groundlayer dicots and trees declined to 28, 60, and 68% of mean wet-season values, respectively. We compared the data to remotely sensed vegetation indices, finding that field measurements were more strongly correlated to the enhanced vegetation index (EVI, r ²=0.71) than to the normalized difference vegetation index (NDVI, r ²=0.49). Although the latter has been more widely used in quantifying leaf dynamics of tropical savannas, EVI appears better suited for this purpose. Our ground-based measurements demonstrate that groundlayer LAI declines with increasing tree density across sites, with savanna grasses being excluded at a tree LAI of approximately 3.3. LAI averaged 4.2 in nearby gallery (riparian) forest, so savanna grasses were absent, thereby greatly reducing fire risk and permitting survival of fire-sensitive forest tree species. Although edaphic conditions may partly explain the larger tree LAI of forests, relative to savanna, biological differences between savanna and forest tree species play an important role. Overall, forest tree species had 48% greater LAI than congeneric savanna trees under similar growing conditions. Savanna and forest species play distinct roles in the structure and dynamics of savanna–forest boundaries, contributing to the differences in fire regimes, microclimate, and nutrient cycling between savanna and forest ecosystems.     

Water availability determines physiognomic gradient in an area of low-fertility soils under Cerrado vegetation

Soil is one of the environmental elements to influence Cerrado vegetation. Aluminum toxicity of Cerrado soils is well known, but the importance of water availability is still to be understood, especially in Cerrado under wetter climates. We studied the association between Cerrado physiognomies (cerrado sensu stricto and cerradão) and morphological, chemical, physical, and physical–hydrical soil attributes at southwestern São Paulo State, Brazil. Characterization of soil morphology, classification and sample collection for particle-size distribution, and chemical and water-retention analyses were carried out in 15 permanent plots, where vegetation was characterized floristically and structurally. Simple correlation and canonical correspondence analyses were performed with soil data. Classification of soils (U.S. Soil Taxonomy) with very low clay contents was not able to separate soils under cerradão—forestry physiognomy—from those under cerrado sensu stricto—savannic physiognomy, even though it tends to distinguish soils under greater biomass from those under lower biomass physiognomies. High soil acidity of all studied soils and increased at the sites with greater contents of organic matter, mainly with the cerradão physiognomy, precluded Al toxicity as a cause of the physiognomic gradient within Cerrado. Clay content, microporosity, and residual and saturation moisture were the most significant soil attributes to correlate directly with the cerradão physiognomy, indicating that water availability is the main factor explaining the physiognomic gradient of Cerrado vegetation in a local scale, where climate and soil fertility do not vary spatially.     

Genetic diversity and species diversity of stream fishes covary across a land-use gradient

Genetic diversity and species diversity are expected to covary according to area and isolation, but may not always covary with environmental heterogeneity. In this study, we examined how patterns of genetic and species diversity in stream fishes correspond to local and regional environmental conditions. To do so, we compared population size, genetic diversity and divergence in central stonerollers (Campostoma anomalum) to measures of species diversity and turnover in stream fish assemblages among similarly sized watersheds across an agriculture–forest land-use gradient in the Little Miami River basin (Ohio, USA). Significant correlations were found in many, but not all, pair-wise comparisons. Allelic richness and species richness were strongly correlated, for example, but diversity measures based on allele frequencies and assemblage structure were not. In-stream conditions related to agricultural land use were identified as significant predictors of genetic diversity and species diversity. Comparisons to population size indicate, however, that genetic diversity and species diversity are not necessarily independent and that variation also corresponds to watershed location and glaciation history in the drainage basin. Our findings demonstrate that genetic diversity and species diversity can covary in stream fish assemblages, and illustrate the potential importance of scaling observations to capture responses to hierarchical environmental variation. More comparisons according to life history variation could further improve understanding of conditions that give rise to parallel variation in genetic diversity and species diversity, which in turn could improve diagnosis of anthropogenic influences on aquatic ecosystems.     

Spatiotemporal changes of beetle communities across a tree diversity gradient

Aim Plant and arthropod diversity are often related, but data on the role of mature tree diversity on canopy insect communities are fragmentary. We compare species richness of canopy beetles across a tree diversity gradient ranging from mono‐dominant beech to mixed stands within a deciduous forest, and analyse community composition changes across space and time. Location Germany’s largest exclusively deciduous forest, the Hainich National Park (Thuringia). Methods We used flight interception traps to assess the beetle fauna of various tree species, and applied additive partitioning to examine spatiotemporal patterns of diversity. Results Species richness of beetle communities increased across the tree diversity gradient from 99 to 181 species per forest stand. Intra‐ and interspecific spatial turnover among trees contributed more than temporal turnover among months to the total γ‐beetle diversity of the sampled stands. However, due to parallel increases in the number of habitat generalists and the number of species in each feeding guild (herbivores, predators and fungivores), no proportional changes in community composition could be observed. If only beech trees were analysed across the gradient, patterns were similar but temporal (monthly) species turnover was higher compared to spatial turnover among trees and not related to tree diversity. Main conclusions The changes in species richness and community composition across the gradient can be explained by habitat heterogeneity, which increased with the mix of tree species. We conclude that understanding temporal and spatial species turnover is the key to understanding biodiversity patterns. Mono‐dominant beech stands are insufficient to conserve fully the regional species richness of the remaining semi‐natural deciduous forest habitats in Central Europe, and analysing beech alone would have resulted in the misleading conclusion that temporal (monthly) turnover contributes more to beetle diversity than spatial turnover among different tree species or tree individuals.     

Conservation biogeography of anurans in Brazilian Cerrado

The increasing rates of declines in anuran populations worldwide are creating demands for urgent strategies to maximize conservation efforts. This may be critical in regions for which few detailed data on diversity, abundance and distribution are available, such as in the Cerrado of Central Brazil. In this paper, we used a macroecological approach based on the extent of occurrence of 131 species of Anura (Amphibia) in the Cerrado region to design a regional network of potential areas that preserves all anuran species. The final network, obtained using a simulation annealing algorithm based on complementarity, has a total of 17 cells, widely distributed throughout the biome. Minimum costs solutions were obtained in respect to total human population size, soybean production and bovine density, because these are the factors associated with human occupation that historically are more likely to cause broad scale habitat losses. The macro-scale approach used here can provide overall guidelines for conservation and define the focus for more local and effective conservation efforts.     

Mammal survey at a ranch of the Brazilian Cerrado

The wildlife of the Brazilian Cerrado is threatened by large-scale habitat loss, in particular due to conversion to agricultural land. It is essential to study how the mammal fauna copes with the highly fragmented, human-influenced, non-protected landscape. The paper presents the results of a survey of the large to medium-sized mammals of a typical cattle ranch with a mixture of human-created and natural vegetation types. We recorded 18 species. Surprisingly, several species were found to still thrive in the area, however, many species are rare or have become extinct. We conclude the paper with comments relevant for the conservation of mammals in the Cerrado as a whole.     

Genetic diversity of four populations of Qualea grandiflora Mart. in fragments of the Brazilian Cerrado

We analyzed the genetic structure and diversity of Qualea grandiflora Mart., the most abundant woody species in the Brazilian Cerrado. Eight microsatellite loci were used to analyze samples from four populations subjected to different types of anthropic pressure, distributed throughout the state of São Paulo in the regions of Assis, Brotas, Itirapina and Pedregulho. Results indicated a mean number of 12 alleles per locus, but only six effective alleles. Alleles private to particular populations and rare alleles were also detected. An excess of homozygotes and moderate levels of inbreeding were observed. No clones were identified. All populations departed from Hardy–Weinberg equilibrium (p < 0.05). Spatial structure was observed in the distribution of specimens in distance classes ranging from 30 to 40 km and three genetic clusters were identified, with genotypes in the Pedregulho population differing from the others by up to 90 %. The influence of the Wahlund effect on the studied populations lies between 8.5 and 53.3 %. Estimates of effective population size were low (<10), and the minimum viable area for conservation in the short-, medium- and long-term was estimated to be between 4 and 184 ha. Gene flow was high enough to counter the effects of genetic drift. The genetic diversity and divergence between the studied populations indicated that the Pedregulho population should be considered an Evolutionary Significant Unit and a Management Unit.     

Bat diversity of a Cerrado habitat in central Brazil

The Cerrado is considered one of the 25 biodiversity hotspots in the world by conservation organizations. There are few studies on bat taxonomic groups for this biome. Herein we present a bat survey employing mist nets in the protected area of a private natural heritage reserve Reserva Particular do Patrimônio Natural Pousada das Araras, located in the west-central Brazil. We investigate the hypothesis that the Cerrado habitat complexity plays a role on the different structuring forces in bat ecological communities. Bats represent a diversity of trophic levels, and they occupy a wide range of available Cerrado habitats and microhabitats. The patterns and processes we discuss represent the factors influencing coexisting species of bats in different habitats and their implications for conservation. We captured 758 individuals of 25 species belonging to four families. Phyllostomidae was the dominant family, represented by 20 species (80%). The average recapture rate was 6.2%, and the species with most proportional recapture was A. caudifer. Greater species richness was observed among bats with predominantly insectivore habits, followed by frugivores. Glossophaga soricina was a dominant species, with about 30% of the captures. There was seasonal variation relating to the number of bats captured, with greater bat frequency occurring during the wet season, although some species occurred at higher rates during the dry season, such as C. perspicillata and S. lilium. Sanguivore bats were abundant, reflecting the availability of shelters and food supply (livestock) in the surrounding area. Compared to other surveyed areas, Pousada das Araras may be considered of high species diversity, supplanting the majority of known Cerrado studied areas. Apparently Cerrado favours the occurrence of insectivore species, with emphasis on the foliage-gleaning insectivores belong to the subfamily Phyllostominae. This study indicates that apparently the conservation of the Cerrado savanna fragments can support a considerable diversity of bat species.     

Germinable soil seed bank of a gallery forest in Brazilian Cerrado

The soil seed bank is a dynamic biotic component of plant communities that represents the population’s memory in relation to selective events. Few studies have investigated the natural stock of germinable seeds in the gallery forests to evaluate their regeneration potential, although they are target of anthropogenic action. Thus, seasonal, horizontal, and vertical qualitative and quantitative variations of the seed bank of a gallery forest in the Brazilian Cerrado were studied to test the influence of the climatic seasonality, the influence of the physical structure, and depth of the soil in different microhabitats of the forest in this natural seed store. It was also compared the richness and abundance of species in the germinable seed bank with the above-ground vegetation. Three hundred and seventy-five soil samples were collected at the beginning (April 1998 and 1999) and at the end of the dry season (September 1998). These samples were collected in three microhabitats distributed transversally in relation to drainage line of a large stream, at five depths. The density of germinable seeds decreases with depth, and is similar among microhabitats and seasons. In 24,690 cm³ of soil and 4.05 m² of litter, 1390 seedlings emerged, being 743 dicotyledons and 647 monocotyledons. From 761 survivors, 263 were Cyperaceae, 206 Melastomataceae, 153 Poaceae, and 82 Onagraceae, the most abundant families. This study suggests that the diversity of the germinable soil seed bank is lower than that of the above-ground vegetation of the forest, and that the soil seed bank is not the principal regeneration form of this environment.     

Species turnover regulates leaf‐cutter ant densities in environmental gradients across the Brazilian Cerrado

Environmental changes resulting from Atta leaf‐cutter ant activities characterize them as ecosystem engineers of ecological and economic importance in multiple habitats. Although Atta effects depend strongly on colony density, there has been limited and inconsistent information available on their abundance and interspecific dominance in natural areas and across environmental gradients in the Brazilian Cerrado. Our study bridges this gap by testing the hypothesis that Atta nest density at genus level is high and relatively constant across locations regardless of vegetation type due to strong effects of dominant species turnover. To do so, we conducted a natural experiment surveying Atta nest abundance in five different vegetation types representing the environmental gradient from forest to savannah habitats found in the Cerrado. Our linear transect surveys covered 48.9 km in four well‐preserved areas across two Brazilian states in which we recorded 124 colonies. Of these, 84 nests belonged to A. laevigata and 40 to A. sexdens, the two dominant Atta species in the region. We also found no nests in 30% of the sampled area, which when combined with strong variation in density measured per transect indicates colonies tend to be aggregated in the landscape. Furthermore, we observed a strong dominant species turnover from forest habitats where 90% of nests belonged to A. sexdens to savannah habitats where 92% of nests were A. laevigata. Turnover effect was reflected in the absence of a significant difference in density between locations and vegetation types, indicating that density at genus level remains high and relatively constant regardless of nest aggregation. Our findings allow larger scale inferences about Atta effects and reveal new insights of their dynamics into natural areas that could affect plant species distribution and contribute to spatial heterogeneity of vegetation, having important implications for Cerrado conservation.     

Trade‐offs between savanna woody plant diversity and carbon storage in the Brazilian Cerrado

Incentivizing carbon storage can be a win‐win pathway to conserving biodiversity and mitigating climate change. In savannas, however, the situation is more complex. Promoting carbon storage through woody encroachment may reduce plant diversity of savanna endemics, even as the diversity of encroaching forest species increases. This trade‐off has important implications for the management of biodiversity and carbon in savanna habitats, but has rarely been evaluated empirically. We quantified the nature of carbon‐diversity relationships in the Brazilian Cerrado by analyzing how woody plant species richness changed with carbon storage in 206 sites across the 2.2 million km² region at two spatial scales. We show that total woody plant species diversity increases with carbon storage, as expected, but that the richness of endemic savanna woody plant species declines with carbon storage both at the local scale, as woody biomass accumulates within plots, and at the landscape scale, as forest replaces savanna. The sharpest trade‐offs between carbon storage and savanna diversity occurred at the early stages of carbon accumulation at the local scale but the final stages of forest encroachment at the landscape scale. Furthermore, the loss of savanna species quickens in the final stages of forest encroachment, and beyond a point, savanna species losses outpace forest species gains with increasing carbon accumulation. Our results suggest that although woody encroachment in savanna ecosystems may provide substantial carbon benefits, it comes at the rapidly accruing cost of woody plant species adapted to the open savanna environment. Moreover, the dependence of carbon‐diversity trade‐offs on the amount of savanna area remaining requires land managers to carefully consider local conditions. Widespread woody encroachment in both Australian and African savannas and grasslands may present similar threats to biodiversity.     

Soil microbial diversity and community structure across a climatic gradient in western Canada

Soil microbial functional diversity was assessed along a climatic gradient in Western Canada. Mineral soil samples were collected from jack pine (Pinus banksiana Lamb.) stands along an 800km transect between Prince Albert, Saskatchewan and Gillam, Manitoba. Microbial communities were isolated from the soil samples, washed and inoculated into wells of Gram-negative Biolog microplates. Optical density values were used to calculate Shannon diversity indices and to perform principal component analysis. Colour development rank plots (CDR) were created by expressing optical density values as a percentage of total colour development and plotting the wells in descending order. Soil microbial functional diversity decreased with increasing latitude and correlated positively with measures of atmospheric temperature and pH. Soil microbial diversity may be lower in northern sites due to decreased productivity, nutrient limitation and higher acidity. CDR plots are consistent with a trend of increasing environmental harshness moving north along the transect.     

Cryptic lineages and Pleistocene population expansion in a Brazilian Cerrado frog

Diversification of South American species endemic to open habitats has been attributed to both Tertiary events and Pleistocene climatic fluctuations. Nonetheless, phylogeographical studies of taxa in these regions are few, precluding generalizations about the timing and processes leading to differentiation and speciation. We inferred population structure of Hypsiboas albopunctatus, a frog widely distributed in the Brazilian Cerrado. Three geographically distinct lineages were recovered in our phylogeny. The Chapada dos Guimarães (CG) clade was the first to diverge from other populations and contains multiple haplotypes from a single population in western Cerrado, probably representing a cryptic species. The southeast clade (SE) includes populations along the southeastern limit of the range within the historical distribution of the Brazilian Atlantic forest. Finally, the Central Cerrado (CC) group includes haplotypes from the interior of Brazil that are paraphyletic relative to the SE clade. Analyses of historical demography indicate significant population expansion in the CC and SE populations, likely associated with colonization of newly formed open habitats. The divergence of populations in the CG clade occurred in the late Miocene, concordant with the uplift of the central Brazilian plateau. Divergence of the SE clade from the CC occurred during the mid‐Pleistocene. Thus, both Tertiary geological events and Pleistocene climatic fluctuations promoted divergences among lineages. Our study reveals a complex history of diversification in the Cerrado, a morphoclimatic domain highly threatened because of anthropogenic habitat alteration. We identified surprisingly deep divergences in a widely distributed frog, indicating that the Cerrado is not a barrier‐free habitat and that its diversity is likely underestimated.