The first chordate big defensin: identification, expression and bioactivity

Defensins are broadly present in plants, invertebrates and vertebrates, but little information is available about it in amphioxus, a protochordate holding a key phylogenetic position. In this study, a big defensin cDNA was identified from the amphioxus Branchiostoma japonicum (termed Bjbd). The cDNA contained an open reading frame (ORF) of 354 bp encoding a 117 amino acid protein, which had an N-terminal signal sequence followed by a propeptide and the mature big defensin. The mature peptide had the hydrophobic region GAAAVT(A)AA at N-terminus and the consensus pattern C-X6-C-X3-C-X13(14)-C-X4-C-C at C-terminus as well as four α-helices, four β-sheets, and three disulfide bridges (C1-C5, C2-C4 and C3-C6) in the predicted tertiary structure. This is the first big defensin gene ever identified in the phylum Chordata. Quantitative real-time PCR analysis revealed that Bjbd was constitutively expressed in most of the tissues examined, and its expression was remarkably up-regulated following the challenge with LPS, LTA, Aeromonas hydrophila and Staphylococcus aureus. Moreover, the recombinant BjBD was shown to be able to inhibit the growth of S. aureus, Escherichia coli and A. hydrophila. Taken together, these suggest that BjBD is a molecule involved in the removal of invading pathogens.     

肢体再生——来自有尾两栖类的认知

蝾螈等有尾两栖类在其肢体任何节段被截断后,能通过准确的时空模式调节完成具有位置匹配关系的再生修复,该过程由受损肢体残端产生的芽基组织介导完成。芽基细胞的来源目前尚有争议,其产生受局部基质微环境诱导并涉及细胞表观遗传学改变,性状上呈现不完全的细胞再编程特征,增殖分化具有神经依赖性。哺乳类包括人类仅具有极为有限的肢体再生能力,其肢体再生限于指（趾）末端受损离断。深入探讨有尾两栖类等肢体再生过程的细胞分子机制,将为探索新的干细胞损伤修复途径及再生促进策略提供线索。     

高原珍稀两栖动物——西藏山溪鲵

西藏山溪鲵是一种分布于高海拔地区冷水溪流中的有尾两栖动物,但近年来,由于人类的砍伐和开垦活动使其栖息地严重丧失,同时掠夺式的抓捕使其种群数量急剧下降,已渐显濒危之势。因此,加强其保护已刻不容缓。     

The evolution of metamorphosis in amphibians

A survey is provided of the external transformations that coincide with metamorphosis or a water-to-land transition, and of transformations during water-to-land transition in the retinal projection, the brain stem, the lateral-line system, and the inner ear of amphibians. Among the three orders of amphibians, the frogs are characterized by more pronounced transformations during the water-to-land transition than are the other two orders. Some of the progressive and regressive changes in the sensory and nervous system are presented and a scenario is suggested for the evolution of these transformations among amphibians. Suggestions that metamorphosis in frogs can recapitulate the water-to-land transition of ancestral amniotic vertebrates are refuted.     

A novel defensin from the lentil Lens culinaris seeds

A novel 47-residue plant defensin was purified from germinated seeds of the lentil Lens culinaris by ammonium sulfate precipitation, gel filtration, chromatography, and RP-HPLC. The molecular mass (5440.41 Da) and complete amino acid sequence (KTCENLSDSFKGPCIPDGNCNKHCKEKEHLLSGRCRDDFRCWCTRNC)¹ of defensin, termed Lc-def, were determined. Lc-def has eight cysteines forming four disulfide bonds. The total RNA was isolated from lentil germinated seeds, RT-PCR and subsequent cloning were performed, and cDNA was sequenced. A 74-residue predefensin contains a putative signal peptide (27 amino acid) and a mature protein. Lc-def shows high sequence homology with legumes defensins, exhibits an activity against Aspergillus niger, but does not inhibit proteolytic enzymes.     

The latest Early Pleistocene amphibians and reptiles from Kaiafas (Greece) and the first record of fossil Ophiomorus (Squamata,Scincidae)

Together with the rest of the Balkan Peninsula, Greece acted as a refuge for thermophilic amphibians and reptiles during the Quaternary Glaciations. In this work we provide new herpetological data on the latest Early Pleistocene locality of Kaiafas, in western Peloponnese. The site yielded one indeterminate salamandrid urodelan (Salamandridae indet.), one tree frog (Hyla gr. H. arborea), one indeterminate testudinid (Testudinidae indet.), at least two lacertid lizards (Lacertidae indet. A and B), one scincid lizard (Ophiomorus sp.), one anguid lizard (Pseudopus sp.), and one indeterminate “colubrine” snake (“Colubrinae” indet.). This assemblage is indicative of a surrounding environment with water bodies, wooded areas, and possibly loose soils with rocks and stones. In spite of being based on few remains, the study of the amphibians and reptiles from Kaiafas resulted in the identification of the first fossil of Ophiomorus known worldwide. Moreover, the two lacertid taxa displayed very peculiar morphological features which are either previously unknown or rare in that clade.     

Isolation,purification and de novo sequencing of TBD‐1, the first beta‐defensin from leukocytes of reptiles

A novel peptide with antimicrobial activity was isolated from leukocytes of the European pond turtle Emys orbicularis and purified to homogeneity by preparative gel electrophoresis followed by reversed phase chromatography. It was highly active in vitro against Escherichia coli, Listeria monocytogenes, methicillin‐resistant Staphylococcus aureus, and Candida albicans. The isolated peptide was sequenced de novo by tandem mass spectrometry using both collision‐induced and electron‐transfer dissociation in combination with different chemical derivatization techniques. The 40‐residue peptide, called TBD‐1 (turtle β‐defensin 1), represents the first defensin isolated from reptilian leukocytes. It contains three disulfide bonds and shows high structural similarities to β‐defensins isolated from birds and mammals.     

Genome variations in the transition from amphibians to reptiles

Summary Many characters differentiate amphibian from reptilian genomes. The former have, on the average, larger and more variable genome sizes, a greater repetitive DNA percentage, and a higher interspersion level among DNAs with different degrees of repetitivity. Reptiles have more reduced and uniform genome sizes, a repetitive DNA percentage generally lower than 50%, and a lower interspersion level. Other differences can be observed in the chromosome banding and in the correlations between genome size and other morphometric and functional parameters of the cell.The differences found in amphibians and reptiles seem to indicate that in these two vertebrate classes there is a different tendency toward or tolerance of the accumulation and preservation of genetically dispensable DNA fractions. This might depend either on a different propensity toward genic amplification or on the appearance, in reptiles, of stricter and more efficient constraints regulating genome size.     

Bldesin,the first functionally characterized pathogenic fungus defensin with Kv1.3 channel and chymotrypsin inhibitory activities

Fungus defensin is a kind of important natural peptide resource, such as plectasin from the soil fungus Pseudoplectania nigrella with potential application in the antimicrobial peptide lead drug discovery. Here, a fungus defensin named Bldesin with Kv1.3 channel and serine protease inhibitory activities was first explored. By GST‐Bldesin fusion expression and enterokinase cleaving strategy, recombinant Bldesin was obtained successfully. Antimicrobial assays showed that Bldesin had potent activity against Gram‐positive Staphylococcus aureus, but had no effect on Gram‐negative Escherichia coli. Electrophysiological experiments showed that Bldesin had Kv1.3 channel inhibitory activity. Serine protease inhibitory associated experiments showed that Bldesin had unique chymotrypsin protease inhibitory, elastase protease inhibitory, and serine protease‐associated coagulation inhibitory activities. To the best of our knowledge, Bldesin is the first functionally characterized pathogenic fungus defensin with Kv1.3 channel and chymotrypsin inhibitory activities and highlighted novel pharmacological effects of fungus‐derived defensin peptides.     

Blood parasites of amphibians from Algonquin Park, Ontario

During a 5 wk period beginning May 25, 1983, 329 amphibians, which included specimens of Rana catesbeiana Shaw, Rana clamitans Latreille, Rana septentrionalis Baird, Rana sylvatica LeConte, Hyla crucifer Wied, Bufo americanus Holbrook, and Plethodon cinereus Green, from Lake Sasajewun, Algonquin Park, Ontario, Canada were examined for blood parasites. The prevalences of species of Trypanosoma, Haemogregarina, Lankesterella, Babesiasoma, and Thrombocytozoons in these amphibians were determined. Two species of microfilaria (probably Foleyella spp.) and two intraerythrocytic forms, inclusions of an icosahedral cytoplasmic DNA virus (ICDV) and groups of rickettsial organisms, were also observed. The following are new host records: Trypanosoma ranarum (Lankester, 1871) in B. americanus; Trypanosoma ranarum (Lankester, 1871) in R. sylvatica; Trypanosoma pipientis Diamond, 1950, Babesiasoma stableri Schmittner and McGhee, 1961 and Thrombocytozoons ranarum Tchacarof, 1963 in R. septentrionalis. The aquatic frogs generally showed a much higher prevalence of infection with blood parasites than the terrestrial frogs, toads and salamanders, which is suggestive of an aquatic vector. The leech Batracobdella picta Verrill, 1872, which was found on many of the aquatic frogs, is the most likely vector in the study area. Also, an increasing prevalence of parasites was noted with increasing sizes (ages) of Rana clamitans and R. catesbeiana suggesting that longer exposure to water makes these species more likely to acquire blood parasites. The presence of Trypanosoma ranarum in B. americanus appeared to coincide with their attainment of sexual maturity.     

A defensin from tomato with dual function in defense and development

Defensins are antimicrobial peptides that are part of the innate immune system, contributing to the first line of defense against invading pathogens. Defensins and defensin-like peptides are functionally diverse, disrupting microbial membranes and acting as ligands for cellular recognition and signaling. Here we show that the tomato defensin DEF2 is expressed during early flower development. Defensin mRNA abundance, peptide expression and processing are differentially regulated in developing flowers. Antisense suppression or constitutive overexpression of DEF2 reduces pollen viability and seed production. Furthermore, overexpression of DEF2 pleiotropically alters the growth of various organs and enhances foliar resistance to the fungal pathogen Botrytis cinerea. Partially purified extracts from leaves of a DEF2-overexpressing line inhibited tip growth of B. cinerea. Besides providing insights into regulation of defensin expression, these data demonstrate that plant defensins, like their animal counterparts, can assume multiple functions related to defense and development.     

The first Loranthaceae fossils from Africa

An ongoing re-investigation of the early Miocene Saldanha Bay (South Africa) palynoflora, using combined light and scanning electron microscopy (single grain method), is revealing several pollen types new to the African fossil record. One of the elements identified is Loranthaceae pollen. These grains represent the first and only fossil record of Loranthaceae in Africa. The fossil pollen grains resemble those produced by the core Lorantheae and are comparable to recent Asian as well as some African taxa/lineages. Molecular and fossil signals indicate that Loranthaceae dispersed into Africa via Asia sometime during the Eocene. The present host range of African Loranthaceae and the composition of the palynoflora suggest that the fossil had a range of potential host taxa to parasitise during the early Miocene in the Saldanha Bay region.     

The triplet code from first principles

Temporal order ("chronology") of appearance of amino acids and their respective codons on evolutionary scene is reconstructed. A consensus chronology of amino acids is built on the basis of 60 different criteria each offering certain temporal order. After several steps of filtering the chronology vectors are averaged resulting in the consensus order: G, A, D, V, P, S, E, (L, T), R, (I, Q, N), H, K, C, F, Y, M, W. It reveals two important features: the amino acids synthesized in imitation experiments of S. Miller appeared first, while the amino acids associated with codon capture events came last. The reconstruction of codon chronology is based on the above consensus temporal order of amino acids, supplemented by the stability and complementarity rules first suggested by M. Eigen and P. Schuster, and on the earlier established processivity rule. At no point in the reconstruction the consensus amino-acid chronology was in conflict with these three rules. The derived genealogy of all 64 codons suggested several important predictions that are confirmed. The reconstruction of the origin and evolutionary history of the triplet code becomes, thus, a powerful research tool for molecular evolution studies, especially in its early stages.