Genetic relationships among marine and freshwater populations of the European three-spined stickleback (Gasterosteus aculeatus) revealed by microsatellites

To assess the population genetic structure of the three-spined stickleback, Gasterosteus aculeatus, variability at 18 microsatellite loci was examined in 1724 individuals from 74 locations covering most of the species distribution range in Europe. The results revealed high overall degree of differentiation (F(ST) = 0.21) but contrasting level of divergence and genetic variability between habitat types. Marine populations were genetically relatively uniform even across great geographical distances as compared to substantial differentiation among freshwater populations. Analysis of molecular variance indicated low but significant (2.7%) variation in allele frequencies between geographical regions, but a negligible effect of habitat type (0.2%). The phylogenetic pattern was not explained by habitat type, but a weak signal of populations clustering according to geographical or water system origin was found. The results support the view that three-spined stickleback marine ancestors colonized northern European fresh waters during the postglacial marine submergence c. 10,000 years ago, whereas in the Mediterranean region colonization probably dates back to the Pleistocene. The independent origins of river and lake populations indicate that they originate from multiple colonizations rather than sharing common ancestry. In the continuous marine environment, the low degree of differentiation among populations can be explained by gene flow among subpopulations and large effective population size buffering divergence in neutral markers. In contrast, among postglacially established freshwater populations differentiation appears to be driven by genetic drift and isolation. The stepwise mutations appear to have contributed to the population differentiation in the southern part of the three-spined stickleback distribution range.     

Lateral plate morph differentiation of freshwater and marine populations of the three-spined stickleback, Gasterosteus aculeatus, in Poland

The distribution of three main lateral plate morphs of the three–spined stickleback, Gasterosteus aculeatus , in the Polish zone of the Baltic Sea and inland waters is surveyed. Most sites are characterized by predominance of the completely plated morph, although it is only in the Vistula River drainage basin where monomorphic complete populations prevail. Polymorphic populations with a high proportion of the non–complete morphs are found in Puck Bay (the Baltic) and in south–west Poland, Possible causes of this pattern are discussed.     

Polymorphism and signature of selection in the MHC class I genes of the three-spined stickleback Gasterosteus aculeatus

The role and intensity of positive selection maintaining the polymorphism of major histocompatibility complex (MHC) class I genes in the three-spined stickleback Gasterosteus aculeatus was investigated. The highly polymorphic set of MHC class I genes found was organized in a single linkage group. Between 5 and 14 sequence variants per individual were identified by single-stranded conformation polymorphism (SSCP) analysis. Segregation analysis studied in 10 three-spined stickleback families followed the expected pattern of Mendelian inheritance. The gamete fusion in three-spined stickleback thus seems to be random with respect to the MHC class I genes. The DNA sequence analyses showed that the expressed MHC class I loci are under strong selection pressure, possibly mediated by parasites. Codons that were revealed to be under positive selection are potentially important in antigen binding. MHC class I sequences did not form significant supported clusters within a phylogenetic tree. Analogous to MHC class II genes, it was not possible to assign the class I sequences to a specific locus, suggesting that the class I genes may have been generated by recent gene duplication.     

Schooling affects growth in the three-spined stickleback, Gasterosteus aculeatus

Three-spined stickleback fry (mean length 20 mm, mean weight 14 mg) were reared for 14 days alone and in groups of six in a constant per capita water volume. The fish originated from two habitats (rock-pools, sea) of different predation pressure. The fry were fed nauplii of Artemia and commercial aquarium fish food ad libitum. Specific growth rates of solitary and schooling fry differed and were also affected by their origin. The specific growth rates of solitary fry from the sea averaged 1.0% day⁻¹ (length) and 6.0% day⁻¹ (weight) and those of solitary rock-pool fry 1.1 and 6.7%, respectively. For group-reared fish the corresponding values were 1.2% (length) and 6.6% (weight), and 1.3% (length) and 7.6% (weight). The finding that schooling sticklebacks grow faster than solitary ones implies that grouping enhances fitness in stickleback fry under the conditions of our experiments.     

Female mate choice and male red coloration in a natural three-spined stickleback (Gasterosteus aculeatus) population

Under laboratory conditions, female three-spined sticklebacks(Gasterosteus aculeatus L.) show a mating preference for intenselyred-colored males. We verified this female choice in the fieldby observing a freshwater stickleback population in its naturalhabitat. During the egg collection phase, individual courtingmales were localized with the aid of a dummy of a ripe female,caught and photographed under standardized conditions, and released.After males had stopped collecting eggs, we counted the numberof eggs in the nests. The more intense a male's red breedingcoloration, the more eggs he received. Simultaneous female choiceexperiments in the laboratory suggested that ripe females ofthis population preferred redder males. Breeding activitiesof the males in the field were clustered and seem to be synchronizedwithin clusters. At one of the breeding sites, more intensered males were in better physical condition, but this was notthe case at another site. Although several synchronized breedingcycles were observed, the majority of males seem to completeonly one breeding cycle.     

Population genetic dynamics of three-spined sticklebacks (Gasterosteus aculeatus) in anthropogenic altered habitats

In industrialized and/or agriculturally used landscapes, inhabiting species are exposed to a variety of anthropogenic changes in their environments. Genetic diversity may be reduced if populations encounter founder events, bottlenecks, or isolation. Conversely, genetic diversity may increase if populations adapt to changes in selective regimes in newly created habitats. With the present study, genetic variability of 918 sticklebacks from 43 samplings (21.3 ± 3.8 per sample) at 36 locations from cultivated landscapes in Northwest Germany was analyzed at nine neutral microsatellite loci. To test if differentiation is influenced by habitat alterations, sticklebacks were collected from ancient running waters and adjacent artificial stagnant waters, from brooks with salt water inflow of anthropogenic and natural origin and adjacent freshwater sites. Overall population structure was dominated by isolation by distance (IBD), which was significant across all populations, and analysis of molecular variance (AMOVA) revealed that 10.6% of the variation was explained by river catchment area. Populations in anthropogenic modified habitats deviated from the general IBD structure and in the AMOVA, grouping by habitat type running/stagnant water explained 4.9% of variation and 1.4% of the variation was explained by salt-/freshwater habitat. Sticklebacks in salt-polluted water systems seem to exhibit elevated migratory activity between fresh- and saltwater habitats, reducing IBD. In other situations, populations showed distinct signs of genetic isolation, which in some locations was attributed to mechanical migration barriers, but in others to potential anthropogenic induced bottleneck or founder effects. The present study shows that anthropogenic habitat alterations may have diverse effects on the population genetic structure of inhabiting species. Depending on the type of habitat change, increased genetic differentiation, diversification, or isolation are possible consequences.     

Schistocephalus infestation improves prey-size selection by three-spined sticklebacks, Gasterosteus aculeatus

Schistocephalus -infected sticklebacks ate slightly less but fed more selectively on larger prey than non-infested fish. It follows that, in the short-term, the net energy gain in foraging is larger for infested fish. This matches the expectation that infested sticklebacks compensate energy losses due to Schistocephalus.     

Genetic differentiation of freshwater and marine sticklebacks, (Gasterosteus aculeatus) of Eastern Europe

Electrophoretic variation of 13 presumptive enzymatic loci was studied in sticklebacks (Gasterosteus aculeatus) at 6 marine (Baltic) and 13 freshwater sites from Poland. Marine samples are significantly more variable (proportion of polymorphic loci, p # 0.38) than freshwater Samles (p # 0.12). Also the mean number of alleles per locus is significantly higher in the marine samples (n # 1.54) than in freshwater samples (n # 1.14). There is however no significant difference in values of mean heterozygosity between marine and freshwater sticklebacks. Some alleles are found in Baltic sticklebacks only, but all these occur in very low frequencies. Genetic distance between samples is low ranging from D = 0.000053 to 0.031410. However D is significant smaller between marine samples than between freshwater Samles. We suggest than this probaily is the result of larger genetic subdivision of freshwater populations. The low genetic divergence of marine and freshwater populations of the stickleback from poland might be expfained by the recent postglacial colonization of this area from a common refugium.     

Reproductive and histopathological effects of long-term experimental exposure to bis(tributyltin)oxide (TBTO) on the three-spined stickleback, Gasterosteus aculeatus Linnaeus

Three-spined sticklebacks, Gasterosteus aculeatus Linnaeus, were exposed to 0, 0.1, 1.0, 2.5 and 10 μg bis(tributyltin)oxide (TBTO) 1⁻¹ for up to 7.5 months in a flow-through system of sea water. As early as 4 weeks after the start of the experiment, fish from the 10 μg TBTO 1⁻¹ group showed diminishing appetite, increasing lethargy and opaque eyes. The mortality in this group after 2 months of exposure was 80%. No significant differences between the control and the exposed groups were noted concerning fecundity, hatched fry and frequencies of malformed fry. The gonad somatic index (GSI) was determined before and during the spawning period. GSI in control fish increased significantly, while that in the exposed groups remained unchanged between the two sampling occasions. Structural examination of the gills from fish exposed for 2 months to 10 μg TBTO I⁻¹ revealed fusion between secondary lamellae and gradual cell degeneration. The chloride cells were characterized by degenerating mitochondria. Hepatocytes in fish exposed to 2.5 and 10 μg TBTO I⁻¹ contained an increased number of lipid-containing vacuoles and the nucleoli were disorganized and fragmented.     

Effects of Schistocephalus solidus (Cestoda) on the food intake and diet of the three-spined stickleback, Gasterosteus aculeatus

Seasonal differences were detected between uninfected sticklebacks and those infected with Schistocephalus solidus in their stomach fullness and diet composition.     

Heritability of DNA methylation in threespine stickleback (Gasterosteus aculeatus)

Epigenetic mechanisms underlying phenotypic change are hypothesized to contribute to population persistence and adaptation in the face of environmental change. To date, few studies have explored the heritability of intergenerationally stable methylation levels in natural populations, and little is known about the relative contribution of cis- and trans-regulatory changes to methylation variation. Here, we explore the heritability of DNA methylation, and conduct methylation quantitative trait loci (meQTLs) analysis to investigate the genetic architecture underlying methylation variation between marine and freshwater ecotypes of threespine stickleback (Gasterosteus aculeatus). We quantitatively measured genome-wide DNA methylation in fin tissue using reduced representation bisulfite sequencing of F1 and F2 crosses, and their marine and freshwater source populations. We identified cytosines (CpG sites) that exhibited stable methylation levels across generations. We found that additive genetic variance explained an average of 24–35% of the methylation variance, with a number of CpG sites possibly autonomous from genetic control. We also detected both cis- and trans-meQTLs, with only trans-meQTLs overlapping with previously identified genomic regions of high differentiation between marine and freshwater ecotypes. Finally, we identified the genetic architecture underlying two key CpG sites that were differentially methylated between ecotypes. These findings demonstrate a potential role for DNA methylation in facilitating adaptation to divergent environments and improve our understanding of the heritable basis of population epigenomic variation.     

Phenotypic integration of life history and morphology: an example from three-spined stickleback, Gasterosteus aculeatus L.

Although typically life history and morphology are studied separately, they may evolve most often in concert. Therefore, a full understanding of the evolution of fish life-history patterns may require exploration of the evolutionary interplay between components of life history and other aspects of phenotype. One of the most promising approaches to understanding phenotypic integration is population comparison. This approach is particularly effective when ancestralderived relationships are understood and when multiple populations can be inferred to have evolved derived character states independently. Here we provide an example of this approach using five allopatric populations of freshwater three-spined stickleback ( Gasterosteus aculcatus L.) that have diverged in response to differences in selection regimes among the lakes they inhabit. We demonstrate a relationship between one aspect of reproductive life history, clutch volume and relative body shape. The differences are consistent with those predicted on the basis of differences in trophic habit and overall body form. Finally, we discuss the value of particular groups of fish for use in comparative studies and explore the kinds of evolutionary issues that can be addressed through population comparison.     

Ovarian fluid in the three-spined stickleback Gasterosteus aculeatus: effects of egg overripening and sex steroid treatment

The ovarian fluid properties of the three-spined stickleback Gasterosteus aculeatus were studied in overripe and non-overripe ovulated female sticklebacks and in females that were implanted with Silastic capsules containing testosterone (T), oestradiol (E2), 17,20β-dihydroxypregn-4-en-3-one (17,20β-P) or progesterone (P4) into the abdominal cavity. Overripe females had less ovarian fluid than non-overripe females, but with higher dry mass, higher protein concentration and lower viscosity. T and 17,20β-P increased the amount of ovarian fluid and the fluid protein concentration was increased by 17,20β-P. 1-D sodium dodecyl sulphate–polyacrylamide gel electrophoresis (SDS-PAGE) showed that ovarian fluid contains several proteins, with high individual variability but with no consistent differences between groups. Some of the ovarian fluid proteins appeared to correspond to proteins from the eggs. The results suggest that secretion of ovarian fluid may be influenced by steroid hormones and that changes in its properties are related to the overripening of ovulated eggs. In at least some respects it appears that the changes in the ovarian fluid is a result, rather than the cause of overripening.     

Sensory drive and nuptial colour loss in the three-spined stickleback

Three-spined sticklebacks Gasterosteus aculeatus , from the Chehalis River drainage. Washington, U.S.A., that have lost the mosaic nuptial signal were more likely to be found in tannin stained sub-drainages whereas those expressing the mosaic nuptial signal were more likely to be found in sub-drainages that were not tannin stained. This result is consistent with the sensory drive model.     

Intraspecific differences in patterns of courtship behaviours between the Pacific Ocean and Japan Sea forms of the three-spined stickleback Gasterosteus aculeatus

The courtship behaviour of the Pacific Ocean and Japan Sea forms of the three-spined stickleback Gasterosteus aculeatus were studied in seven populations. The intraspecific difference in behavioural patterns, zigzag dance and weak dorsal pricking in the Pacific Ocean form and lateral display and vigorous dorsal pricking in the Japan Sea form, was clearly distinguishable regardless of the type of habitat the males lived in.     

Calcium and salinity as selective factors in plate morph evolution of the three-spined stickleback (Gasterosteus aculeatus)

Identifying the causal factors underlying natural selection remains a key challenge in evolutionary biology. Although the genetic basis for the plate morph evolution of three-spined stickleback (Gasterosteus aculeatus) is well described, the environmental variables that form the basis for different morphs are not understood. We measured the effects of dissolved calcium and salinity on the growth of sticklebacks with different plate morphs from Scotland and Poland. There was a significant interaction of calcium with plate morph for fish from both regions, with complete morph sticklebacks growing more slowly at low calcium concentrations and low morph sticklebacks showing divergent responses to calcium concentration. A Scottish anadromous population showed evidence of local adaptation to high salinity, which was independent of plate morph. Polish and Scottish populations diverged in their response to salinity, suggesting a difference in osmotic regulation. The results implicate a role for calcium in selecting for plate morph evolution in sticklebacks, possibly as a limiting element in skeletal growth.     

Phylogeography of isolated freshwater three-spined stickleback Gasterosteus aculeatus populations in the Adriatic Sea basin

Analyses of mitochondrial (mt) DNA and microsatellite variation were carried out to examine the relationships between 10 freshwater populations of three-spined sticklebacks Gasterosteus aculeatus along the eastern coast of the Adriatic Sea. Partial sequences of the mtDNA control region and cytochrome b gene, in addition to 15 microsatellite loci, were used to analyse populations from four isolated river catchments. Results uncovered an Adriatic lineage that was clearly divergent from the European lineage, and confirmed that the most divergent and ancient populations are located within the Adriatic lineage as compared with other European populations. Two northern Adriatic populations formed independent clades within the European mitochondrial lineage, suggesting different colonization histories of the different Adriatic populations. Nuclear marker analyses also indicated deep divergence between Adriatic and European populations, albeit with some discordance between the mtDNA phylogeny of the northern Adriatic populations, further highlighting the strong differentiation among the Adriatic populations. The southern populations within the Adriatic lineage were further organized into distinct clades corresponding to respective river catchments and sub-clades corresponding to river tributaries, reflecting a high degree of population structuring within a small geographic region, concurrent with suggestions of existence of several microrefugia within the Balkan Peninsula. The highly divergent clades and haplotypes unique to the southern Adriatic populations further suggest, in accordance with an earlier, more limited survey, that southern Adriatic populations represent an important reservoir for ancient genetic diversity of G. aculeatus.     

Intraspecific variation of spectral sensitivity in threespine stickleback (Gasterosteus aculeatus) from different photic regimes

To examine the influence of the spectral characteristics of underwater light on spectral sensitivity of the ON and OFF visual pathways, compound action potential recordings were made from retinal ganglion cells of threespine stickleback from different photic regimes. In fish from a red-shifted photic regime (P₅₀ 680 nm for downwelling light at 1m), peak sensitivity of both the ON and OFF pathways was limited to long wavelength light (_max 600–620). In contrast, the ON pathway of fish from a comparatively blue-shifted (P₅₀ 566 nm) photic regime exhibited sensitivity to medium (_max 540–560) and long (_max 600 nm) wavelengths, while the OFF pathway exhibited peak sensitivity to only medium (_max 540 nm) wavelength light. In a third population, where the the ambient light is moderately red-shifted (P₅₀ 629 nm), the ON pathway once again exhibited only a long wavelength sensitivity peak at 620 nm, while the OFF pathway exhibited sensitivity to both medium (_max 560 nm) and long (_max 600–620 nm) wavelength light. These findings suggest that the photic environment plays an integral role in shaping spectral sensitivity of the ON and OFF pathways.     

Identifying footprints of selection in stocked brown trout populations: a spatio‐temporal approach

Studies of interactions between farmed and wild salmonid fishes have suggested reduced fitness of farmed strains in the wild, but evidence for selection at the genic level is lacking. We studied three brown trout populations in Denmark which have been significantly admixed with stocked hatchery trout (19–64%), along with two hatchery strains used for stocking. The wild populations were represented by contemporary samples (2000–2006) and two of them by historical samples (1943–1956). We analysed 61 microsatellite loci, nine of which showed putative functional relationships [expressed sequence tag (EST)‐linked or quantitative trait loci]. F_ST‐based outlier tests provided support for diversifying selection at chromosome regions marked by three loci, two anonymous and one EST‐linked. Patterns of differentiation suggested that the loci were candidates for being under diversifying hitch‐hiking selection in hatchery vs. wild environments. Analysis of hatchery strain admixture proportions showed that in one wild population, two of the loci showed significantly lower admixture proportions than the putatively neutral loci, implying contemporary selection against alleles introduced by hatchery strain trout. In the most strongly admixed population, however, there was no evidence for selection, possibly because of immigration by stocked trout overcoming selection against hatchery‐derived alleles or supportive breeding practices allowing hatchery strain trout to escape natural selection. To our knowledge, this is the first study demonstrating footprints of selection in wild salmonid populations subject to spawning intrusion by farmed fish.