小麦TaWRKY47基因的克隆与表达分析

为了探究小麦WRKY基因的功能,该研究采用RT PCR方法,在小麦叶片组织中克隆WRKY基因,并对其进行生物信息学和不同逆境胁迫下的表达分析。结果表明：(1)成功克隆得到1个小麦WRKY基因,命名为TaWRKY47。(2)TaWRKY47基因开放阅读框长度为900 bp,编码299个氨基酸,含有一个WRKY保守结构域和一个C₂HC锌指结构域,属于WRKY基因家族的第Ⅲ类成员。(3)亚细胞定位分析结果显示,TaWRKY47蛋白定位于细胞核。(4)荧光定量PCR结果表明,TaWRKY47基因在小麦根、茎、叶、雄蕊和雌蕊中均有表达,其中在雌蕊中表达量最高,且受低温、干旱、盐、ABA和H₂O₂等胁迫表达增强,推测TaWRKY47基因参与了小麦的逆境胁迫过程。该研究结果为进一步研究TaWRKY47基因功能与抗逆机制奠定了理论基础。     

橄榄CaICE1基因的克隆和表达分析

为了解橄榄(Canarium album)抗寒相关转录因子ICE1的调控功能,采用RT-PCR技术克隆了‘福榄1号’的ICE1,命名为CaICE1,并进行生物信息学、qRT-PCR表达模式和相关miRNA预测分析。结果表明,CaICE1 cDNA序列的开放阅读框长度为1 650 bp,可编码549个氨基酸(GenBank登录号MG459422)。Ca ICE1为不稳定亲水性蛋白质,含有跨膜结构、磷酸化位点以及HLH保守结构域,定位于细胞核,与枳的ICE1亲缘关系较近。CaICE1密码子偏好性较弱,AGA、AGG、TGG和CCA可能为其最优密码子群。CaICE1主要在橄榄花、种子和叶中大量表达,-3℃低温胁迫下CaICE1表达水平比常温显著上升。psRNAtarget预测结果表明,CaICE1可能是miR825、miR477、miR5658、miR1436和miR394等多个逆境响应miRNA的靶基因。因此,CaICE1可能在橄榄低温胁迫过程中发挥重要调控作用,且可能受miRNA的调控。     

水稻胁迫相关基因OsPM1启动子的克隆与分析

依据NCBI数据库OsPM1的序列信息,采用PCR技术扩增获取OsPM1的2 100bp的启动子序列。利用PLACE预测启动子的顺式作用元件分析表明,启动子内含有大量与胁迫相关的顺式作用元件,主要有ABA响应相关元件、脱水响应元件、低温响应元件、热激响应元件和转录因子结合元件。构建OsPM1的启动子和GUS基因融合表达载体,转入拟南芥。组织化学染色分析结果显示,非生物胁迫处理前,幼苗中GUS基因表达水平很低;干旱、低温、高盐等胁迫处理后,GUS基因表达量显著升高。研究表明,OsPM1的启动子能够显著提高在干旱、高盐和低温处理后下游基因的表达水平。     

芒果MSOC1基因的克隆与表达分析

MADS-box转录因子在多种植物的发育过程、特别是花器官的发育过程中发挥着重要的作用。为研究MADS-box转录因子在芒果花器官发育中的作用,利用RT-PCR和RACE技术分离到1个芒果的SOC1基因,命名为MSOC1(GenBank登录号为KP404094)。MSOC1编码区为733bp,编码223个氨基酸,蛋白质相对分子质量为25.6kD,理论等电点为8.96。序列比对和系统进化树分析表明,MSOC1具有保守的MADS-box及半保守的K区,属于MADS-box家族SOC1/TM3亚家族。组织特异性表达分析表明,MSOC1基因在芒果各个组织部位均有表达,但在茎、叶和花芽中表达量高,而在根和花中表达量低。     

小麦胁迫相关基因TaSF3B2的克隆及表达特性分析

为研究小麦剪接因子在逆境胁迫中的作用,通过分析小麦抗性相关EST数据库,筛选并克隆获得1条2 327bp的核苷酸序列。该序列包含了一个1 854bp的开放阅读框,编码一个由617个氨基酸残基组成的蛋白,氨基酸同源比对发现,该蛋白含有GUS1结构域(Splicing Factor 3B,Subunit 2),属于剪接因子3b亚基中的一员,将该蛋白命名为TaSF3B2。生物信息学分析显示,TaSF3B2平均亲水系数(GRAVY)为-0.895,不稳定系数为43.92,且在细胞核中发挥作用的可能性最大。实时荧光定量PCR分析表明,TaSF3B2基因在不同组织中存在差异表达,不同发育时期其表达也存在差异;在幼苗叶片中,该基因表达受高盐、低温、条锈菌、干旱及ABA激素胁迫明显下调表达,而在幼苗根中变化不明显。推测TaSF3B2基因参与了小麦正常条件下的生长发育,同时在小麦应对逆境胁迫的过程中具有重要的作用。     

小麦胁迫相关基因W1的克隆及表达模式分析

应用噬菌体原位杂交技术从干旱胁迫诱导的小麦cDNA文库中克隆到一个胁迫诱导的基因片段别。删全长cDNA为901bp,其中,编码区长498bp,编码166个氨基酸。Southern杂交表明,W1是一个低拷贝基因。RT—PCR结果表明,W1受干旱、低温的诱导,但不受高盐的诱导。氨基酸序列分析发现W1有一个USP保守区（pfam00582）。同源性分析发现W1与一个水稻胁迫诱导蛋白（NM_001061239）的同源性为83％,但该类蛋白的功能尚无报道。肼是小麦第1个被克隆的胁迫相关蛋白基因,该基因的克隆有助于阐明小麦的抗逆机制,并为今后培育抗逆性小麦品种提供候选基因。     

番茄LeRma1基因的克隆与表达

以番茄‘哈大粉801’为试材,利用RT-PCR技术,克隆得到1个E3泛素蛋白连接酶基因LeRma1（GenBank登录号XM_004243764.1）。对LeRma1基因进行序列分析,并对LeRma1基因在番茄植株的不同部位以及在非生物胁迫（干旱、盐、碱、高温、低温）下的表达和生理特性进行研究,为培育和改良番茄品种提供理论依据。结果表明：（1）序列分析显示,LeRma1基因的cDNA全长序列729 bp,编码242个氨基酸,分子量为27.05 kD,理论pI 7.97;同源分析显示,番茄LeRma1蛋白与马铃薯的一致性最高（91%）。（2）半定量PCR检测表明, LeRma1基因在番茄根、茎、叶、花、果实中均有表达,且表达差异不明显。（3）干旱胁迫下,LeRma1基因在番茄叶片中优势表达,而在整个干旱过程中根部的LeRma1基因表达量变化不明显;抗旱相关基因LEA、 DREB2A、ABI3在干旱胁迫过程中,番茄叶片中均有表达,且其表达量呈上升趋势,而在根部DREB2A、ABI3基因基本没有检测到。（4）干旱胁迫过程中,番茄植株中丙二醛（MDA）含量呈显著升高趋势,质膜系统严重损伤,体内保护酶（SOD、POD、CAT）活性上升,且根部活性总体明显高于叶片。（5）在非生物逆境（盐、碱、高温、低温）胁迫过程中,LeRma1基因在番茄叶片和根部的表达几乎都有增强的趋势,且在叶片中均是胁迫3 h后诱导起始增强表达。研究认为,LeRma1基因是一个受干旱胁迫诱导增强表达的基因,且在叶片中优势表达,说明LeRma1基因对植物耐受干旱胁迫所起的作用存在一定的组织差异性,而且LeRma1基因可能参与番茄的干旱应答及信号转导过程,在番茄抵抗其他非生物胁迫中LeRma1基因也可能具有一定的作用。     

烟草NtNHX1 3基因的克隆及表达特性

以栽培烟草‘云烟87’为材料,通过同源克隆方法分离了烟草NHX（Na⁺,K⁺/H⁺ exchanger）基因NtNHX1 3。结果表明：NtNHX1 3基因CDS长度1 617 bp,编码蛋白质长度为538 aa,蛋白理论等电点为8.67,分子量为59.34 kD。预测NtNHX1 3属于膜蛋白,含有11个跨膜区,且含有NHX类蛋白保守位点氨氯吡嗪咪结合位点。进化树分析显示,NtNHX1 3与菊苣、野菊花NHX遗传距离最近。qRT PCR组织特异性表达分析表明,NtNHX1 3在烟草叶片中表达量最高,根、茎、花中也有表达;盐胁迫处理后NtNHX1 3基因的表达上调,表明该基因参与了盐胁迫反应;打顶初期NtNHX1 3基因的表达呈逐渐上调的趋势,与该时期钾含量逐渐升高相吻合。研究推测,NtNHX1 3具有将钾离子从细胞质转运至液泡的功能。     

香菜CsEF 1α基因克隆与表达分析

翻译延伸因子EF 1α(elongation factor 1 alpha)是细胞中最丰富的蛋白质之一,其在确保mRNA正确解码以产生细胞蛋白质方面发挥重要作用。该研究采用RT PCR扩增方法克隆香菜CsEF 1α基因序列,利用生物信息学对CsEF 1α基因结构、序列特征及系统进化等进行分析,并采用qPCR探究CsEF 1α基因在香菜不同生长时期和非生物胁迫下的表达模式,为进一步揭示EF 1α基因调控机制的研究奠定基础。结果显示：(1)成功克隆获得香菜CsEF 1α基因序列;CsEF 1α基因包含1个1 344 bp的开放阅读框,编码447个氨基酸,分子式为C₂₂₀₂H₃₅₄₄N₅₉₄O₆₄₄S₂₀,蛋白质分子量为49.29 kD,等电点为9.12;氨基酸序列组成中赖氨酸数量最多(49个,占11.0%),色氨酸数量最少(3个,占0.7%);属碱性蛋白。(2)CsEF 1α蛋白主要由无规则卷曲(36.91%)和α 螺旋(30.43%)构成,定位于细胞质;系统进化树分析显示,CsEF 1α与胡萝卜、野生番茄、青蒿素和非洲菊的亲缘关系较接近;启动子分析包括4种植物生长发育元件、3种激素响应元件和3种胁迫响应元件。(3)qRT PCR结果显示,CsEF 1α基因的表达量随着香菜生长发育时间的延长而升高,并且与转录丰度的变化一致;CsEF 1α基因对4种不同非生物胁迫的响应表达模式有所差异;随着胁迫时间的延长,在盐胁迫下CsEF 1α基因表现出先升高后降低趋势,而在低温、高温和干旱胁迫下表现出先降低再升高的趋势。研究表明,CsEF 1α基因参与了香菜对非生物胁迫的应答,在香菜生长发育和非生物胁迫中具有重要调控作用。     

乌拉尔图小麦Viviparous-1基因的单倍型及其表达特性研究

该研究采用PCR和半定量RT-PCR方法,对乌拉尔图小麦（Triticum urartu）休眠基因Viviparous-1A（Vp-1A）的单倍型进行分析,并通过建立系统进化树,对Vp-1A基因在乌拉尔图小麦、普通小麦和其他近缘种间的系统发育关系进行分析。结果表明：（1）在20份乌拉尔图小麦中共发现4种新等位变异类型,分别命名为TuVp-1Abgi、TuVp-1Adfi、TuVp-1Aefi和TuVp-1Acgh。与普通小麦的TaVp-1Aa(AJ400712)基因相比,这4种单倍型主要是在第3内含子中有多个TTC不同重复,在第2和第5内含子中存在序列的缺失以及SNPs;（2）用ABA处理种子胚后,4种不同单倍型材料的mRNA表达水平发生变化,表明这4种单倍型对ABA敏感性不同;（3）乌拉尔图小麦中Vp-1A基因不同单倍型,在第2、第3和第5内含子中碱基序列的插入和缺失,影响了Vp-1A基因的表达特性及对ABA的敏感性,从而影响种子休眠特性;（4）鉴定和分析发现,乌拉尔图小麦TuVp-1Adfi单倍型可作为小麦穗发芽抗性资源。     

不同抗旱性冬小麦根系时空分布与产量的关系

为明确不同抗旱性冬小麦品种(Triticum aestivum L.)根系时空分布及其与产量的关系,以抗旱性品种长武134、长旱58和干旱敏感性品种小偃22、西农979为材料,采用根箱试验研究干旱胁迫和充分供水条件下4个品种在拔节期、开花期和成熟期根系总生物量、总根长密度、根系在表层(0—20 cm)和深层(20 cm以下)土壤中的垂直分布、动态变化及其对产量的影响。结果表明,干旱胁迫下抗旱性品种产量显著高于干旱敏感性品种,其中长旱58产量最高,西农979最低;充分供水条件下,西农979产量最高,长武134最低,长旱58与小偃22之间没有差异。相关分析表明,产量与各生育时期根系性状均有显著关系。多元逐步回归分析的结果显示,干旱胁迫和充分供水条件下,拔节期深层根生物量对产量有正效应,而成熟期总根长密度对产量表现为负效应。通径分析表明,干旱胁迫下,根系性状对产量的直接贡献大小为开花期总根长密度(|0.54|)拔节期深层根生物量(|0.36|)成熟期总根长密度(|-0.31|);充分供水时,成熟期总根长密度(|-1.56|)拔节期深层根生物量(|0.83|)。研究表明,减少成熟期总根长密度,增加拔节期深层根生物量对抗旱性及干旱敏感性冬小麦品种产量均有显著的正效应,增加开花期根长密度有利于提高抗旱性冬小麦产量。     

水稻NAM基因家族的全基因组鉴定及表达分析

植物特异性转录因子NAM家族从属于NAC转录因子超家族,在植株生长发育、生理代谢以及应对各种胁迫反应中均发挥重要作用。该研究采用生物信息学方法鉴定水稻基因组中的NAM基因,分析其时空表达模式、亚细胞定位以及蛋白相互作用,并采用实时定量qRT PCR方法分析不同外源激素(如SA、ABA和MeJA)以及非生物胁迫(包括干旱、盐和冷)处理下各NAM基因的表达特征,为进一步探索NAM基因在非生物胁迫中的功能和应激机制以及激素调控途径奠定基础。结果显示：(1)从水稻基因组中共鉴定出48个NAM基因,进化分析将其分为5个亚家族;NAM基因在水稻基因组中存在9对片段复制事件。(2)组织表达分析显示,NAM基因在水稻不同组织及发育时期表现特异性表达,特别是叶鞘、茎和节的生长过程中高表达,且大多数是核定位,并存在多种蛋白互作。(3)实时定量qRT PCR表达分析显示,10个NAM基因在不同组织中均特异表达;大部分NAM基因在盐和干旱胁迫下表达上调,而在冷胁迫下表达降低;SA、ABA和MeJA处理均可显著改变各NAM基因的表达水平。研究表明,NAM基因在水稻生长发育、激素应答和非生物胁迫响应中具有重要作用。     

小麦穗发芽鉴定方法的比较与分析

穗发芽是小麦生产中较为严重的灾害之一,易受外界环境的影响,一旦发生不仅会影响产量,而且还会严重影响小麦的品质,因此培育抗穗发芽的小麦品种至关重要。该研究通过对65份小麦材料进行穗发芽试验,比较分析了小麦穗发芽抗性的常用方法,即籽粒发芽法、整穗发芽法和大田穗发芽法。结果表明:三种方法之间均呈极显著正相关关系,而且在1%水平上均存在极显著性差异;发芽指数与籽粒发芽率的相关性最高,能够更好地评价小麦材料的休眠特性,但不能得出材料的总体抗性;籽粒发芽法和整穗发芽法的变异程度相对较小,试验条件更易控制,可作为小麦穗发芽抗性评价的简易方法;多数参试材料的平均籽粒发芽率平均整穗发芽率平均大田穗发芽率,且三者差异程度均达到极显著水平,这说明麦穗的外部结构及外部环境对小麦穗发芽的影响显著。因此,籽粒发芽法可以从休眠性方面,对小麦种子资源进行初步筛选;整穗发芽法可用于穗发芽抗性的进一步鉴定和验证,评价小麦材料穗发芽的综合抗性;大田穗发芽法较易受自然条件的影响、变异程度较大,其结果可以作为室内发芽试验的参考数据。     

Effects of exogenous ABA and cytokinin on leaf photosynthesis and grain protein accumulation in wheat ears cultured <Emphasis Type="Italic">in vitro</Emphasis>

A detached culture system and steady-state ¹⁵N labeling technique were used to study the effects of exogenous ABA and ZR on photosynthetic characteristics, nitrogen remobilization and the activities of key enzymes for nitrogen metabolism in detached wheat parts during grain protein accumulation. The differences in net photosynthetic rate, chlorophyll content (SPAD value) and soluble protein content in the flag leaves of detached culture system between the treatments of ABA and ZR showed that ABA facilitates the post-anthesis senescence course compared to the ZR treatment. The differences in the changes of ¹⁵N amount in different organs in the detached culture system between the ABA and ZR treatments showed that nitrogen remobilization from vegetative organs to the grain is accelerated by the ABA treatment but is delayed by ZR. The activities of GS and GPT in grains treated with ABA were significantly higher than those with the control treatment at 5 DAC, but reduced significantly compared with control at 11 DAC. The two enzyme activities in grains were reduced significantly by ZR at 5 DAC and increased significantly at 11 DAC, compared with those treated with ABA. The above changes of enzyme activity showed that the ABA treatment hastens amino acid conversion into grains and protein accumulation in grains, whereas the ZR treatment delays these processes. A significant reduction in grain weight with ABA treatment is associated with the reduction of net photosynthesis, chlorophyll content, and soluble protein content in flag leaves. Compared with the control and ZR treatments, a significant increase in grain protein content with the ABA treatment may result from the accelerating effects of ABA on N remobilization, amino acid conversion into grains and protein accumulation in grains.     

Manganese dynamics in the rhizosphere and Mn uptake by different crops evaluated by a mechanistic model

Understanding of the mechanisms of Mn supply from the soil and uptake by the plants can be improved by using simulation models that are based on basic principles. For this, a pot culture experiment was conducted with a sandy clay loam soil to measure Mn uptake by summer wheat (Triticum aestivum L. cv. Planet), maize (Zea mays L. cv. Pirat) and sugar beet (Beta vulgaris L. cv. Orbis) and to simulate Mn dynamics in the rhizosphere by means of a mechanistic model. Seeds of three crops were sown in pots containing 2.9 kg soil in a controlled growth chamber. Root and shoot weight, Mn content of plants, root length and root radius were determined 8 (13 days in case of sugar beet) and 20 days after germination. Soil and plant parameters were determined to run nutrient uptake model calculations. Manganese content of the shoot varied from 25 mg kg^-1 for sugar beet to 34 mg kg^-1 for maize. Sugar beet had the lowest root length/shoot weight ratio but the highest relative shoot growth rate, resulting in the highest shoot demand on the root. This is reflected by the Mn influx which was 0.9 × 10^-7, 1.7 × 10^-7 and 2.5 × 10^-7 nmol cm^-1 s^-1 for wheat, maize and sugar beet, respectively. Nutrient uptake model calculations predicted similar influx values. Initial Mn concentration of 0.2 μM in the soil solution decreased to only 0.16 μM for wheat, 0.13 μM for maize and 0.11 μM for sugar beet at the root surface. This shows that manganese transport to the root was not a limiting step. This was confirmed by the fact that an assumed 20 times increase in maximum influx (I_max) increased the calculated Mn influx by 3.7 times. Sensitivity analysis demonstrated that for controlling Mn uptake the initial soil solution concentration (C _Li), the root radius (r₀), I_max and the Michaelis constant (K _m) were the most sensitive factors in the listed order. This revised version was published online in August 2006 with corrections to the Cover Date.     

Genetic transformation of wheat: progress during the 1990s into the Millennium

Wheat transformation technology has progressed rapidly during the past decade. Initially, procedures developed for protoplast isolation and culture, electroporation- and polyethylene glycol (PEG)-induced DNA transfer enabled foreign genes to be introduced into wheat cells. The development of biolistic (microprojectile) bombardment procedures led to a more efficient approach for direct gene transfer. More recently, Agrobacterium-mediated gene delivery procedures, initially developed for the transformation of rice, have also been used to generate transgenic wheat plants. This review summarises the considerable progress in wheat transformation achieved during the last decade. An increase in food production is essential in order to sustain the increasing world population. This could be achieved by the development of higher yielding varieties with improved nutritional quality and tolerance to biotic and abiotic stresses. Although conventional breeding will continue to play a major role in increasing crop yield, laboratory-based techniques, such as genetic transformation to introduce novel genes into crop plants, will be essential in complementing existing breeding technologies. A decade ago, cereals were considered recalcitrant to transformation. Since then, a significant research effort has been focused on cereals because of their agronomic status, leading to improved genetic transformation procedures (Bommineni and Jauhar 1997). Initially, the genetic transformation of cereals relied on the introduction of DNA into protoplasts and the subsequent production of callus from which fertile plants were regenerated. More recently, major advances have been accomplished in the regeneration of fertile plants from a range of source tissues, providing an essential foundation for the generation of transgenic plants. This review summarises procedures, vectors and target tissues used for transformation, high-lights the limitations of current approaches and discusses future trends. The citation of references is limited, where possible, to the most relevant or recent reports.     

Accelerated production of transgenic wheat (Triticum aestivum L.) plants

We have developed a method for the accelerated production of fertile transgenic wheat (Triticum aestivum L.) that yields rooted plants ready for transfer to soil in 8–9 weeks (56–66 days) after the initiation of cultures. This was made possible by improvements in the procedures used for culture, bombardment, and selection. Cultured immature embryos were given a 4–6 h pre-and 16 h post-bombardment osmotic treatment. The most consistent and satisfactory results were obtained with 30 g of gold particles/bombardment. No clear correlation was found between the frequencies of transient expression and stable transformation. The highest rates of regeneration and transformation were obtained when callus formation after bombardment was limited to two weeks in the dark, with or without selection, followed by selection during regeneration under light. Selection with bialaphos, and not phosphinothricin, yielded more vigorously growing transformed plantlets. The elongation of dark green plantlets in the presence of 4–5 mg/l bialaphos was found to be reliable for identifying transformed plants. Eighty independent transgenic wheat lines were produced in this study. Under optimum conditions, 32 transformed wheat plants were obtained from 2100 immature embryos in 56–66 days, making it possible to obtain R3 homozygous plants in less than a year.     

Tolerance of wheat (<Emphasis Type="Italic">Triticum aestivum</Emphasis> L.) to high soil and solution selenium levels

The fertilisation of wheat crops with Se is a cost-effective method of enhancing the concentration of organic Se in grain, in order to increase the Se intake of animals and humans. It is important to avoid phytotoxicity due to over-application of Se. Studies of phytotoxicity of Se in wheat grown in Australia, where rainfall and grain yield are usually relatively low, have not been reported previously, and overseas studies have had varied results. This study used trials conducted in the field, glasshouse and laboratory to assess Se phytotoxicity in wheat. In field trials that used rates of up to 120 g ha^–1Se as selenate, and in pilot trials that used up to 500 g ha^–1 Se soil-applied or up to 330 g ha^–1 Se foliar-applied, with soils of low S concentrations (2–5 mg kg^–1), no Se toxicity symptoms were observed. In pot trials of four weeks duration, the critical tissue level for Se toxicity was around 325 mg kg^–1 DW, a level attained by addition to the growth medium of 2.6 mg kg^–1 Se as selenate. Solution concentrations above 10 mg L^–1 Se inhibited early root growth of wheat in laboratory studies, with greater inhibition by selenite than selenate. For selenite, Se concentrations around 70 mg L^–1 were required to inhibit germination, while for selenate germination % was unaffected by a solution concentration of 150 mg L^–1 Se. Leaf S concentration and content of wheat increased three-fold with the addition of 1 mg kg^–1 Se as selenate to the growth medium. This effect is probably due to the induction of the S deficiency response of the main sulphate transporter. This study found wheat to be more Se-tolerant than did earlier studies of tobacco, soybeans and rice. We conclude that Se phytotoxicity in wheat will not be observed at the range of Se application rates that would be used to increase grain Se for human consumption (4–200 g ha^–1 Se as selenate, which would result in soil and tissue levels well below those seen in the above studies), even when – as is common in Australia – soil S concentration and grain yield are low.