Biological invasions: deriving the regions at risk from partial measurements

We consider the problem of forecasting the regions at higher risk for newly introduced invasive species. Favourable and unfavourable regions may indeed not be known a priori, especially for exotic species whose hosts in native range and newly-colonised areas can be different. Assuming that the species is modelled by a logistic-like reaction-diffusion equation, we prove that the spatial arrangement of the favourable and unfavourable regions can theoretically be determined using only partial measurements of the population density: (1) a local ‘spatio-temporal’ measurement, during a short time period and, (2) a ‘spatial’ measurement in the whole region susceptible to colonisation. We then present a stochastic algorithm which is proved analytically, and then on several numerical examples, to be effective in deriving these regions.     

Biomarker assessment of organic matter sources and degradation in Canadian High Arctic littoral sediments

This paper presents an uncomplicated approach to improve estimates of groundwater nutrient load to a marine embayment. A two-dimensional chemical profile of shallow groundwater was analysed in a sandy beach in three seasons (early summer, late summer and mid winter) and an adjusted estimate of groundwater nutrient discharge was derived that accounts for a complex biogeochemical environment and non-conservative behaviour of nutrients in the pre-discharge beach groundwater. The study was conducted at Cockburn Sound, Western Australia, where there has been significant groundwater contamination and associated marine ecological degradation. Losses in nitrogen and increases in phosphorus were observed along the discharge pathway beyond that expected from mixing with marine water, and the changes were attributed to chemically and biologically mediated reactions. A slow groundwater velocity (0.14–0.18 m day^?1), high organic carbon (TOC = 0.35–4.9 mmol l^?1, DOC = 0.28–4.6 mmol l^?1) and low to sub-oxic conditions (DO = 0.4–24% saturation) were deemed suitable for chemically and biologically mediated reactions to occur and subsequently alter regional estimates of groundwater nutrient concentration. Accounting for this environment, groundwater loads were calculated that were 1–2 orders of magnitude less than previous regional-based estimates: 0.4–13 kg NO _x ^?  day^?1, 0.2–24 kg NH₄ ⁺ day^?1 and 0.004–0.8 kg FRP day^?1. This paper applies knowledge of recent research and presents scope to marine managers or modellers to account for groundwater inputs to the marine environment.     

Nipping aquatic plant invasions in the bud: weed risk assessment and the trade

The importation and sale of ornamental pond and aquarium plants is the most important pathway for the introduction of potential aquatic weeds into and subsequent spread of these within a country. Most current aquatic weeds were at one time deliberately imported for ornamental use. This article discusses a weed risk assessment approach to evaluating new potential weeds. It assesses the potential invasiveness of an aquatic plant based on its habitat versatility, competitive ability, reproductive output and dispersal mechanisms, range of potential impacts, potential distribution and resistance to management activities. The Aquatic Weed Risk Assessment Model (AWRAM) has been used to evaluate potential aquatic weeds in New Zealand, Australia and the USA. A similar approach could be used to guide the management of aquatic weeds in Europe. Banning the importation of highly ranked species effectively keeps biosecurity risks off-shore. Assessment of aquatic plant trade patterns, especially volumes of high-risk species, along with knowledge of current and potential distribution of those species and ease of management, are all factors to be considered when evaluating candidate plants for prevention of sale and distribution. This is a highly effective way of restricting both long-distance dispersal and density of propagules. A cooperative approach involving researchers, policy and trade representatives has been an effective way to achieve regulation of this risk pathway. European initiatives to prevent the distribution of potential aquatic weeds include the preparation of lists of known invasive aquatic species by the European and Mediterranean Plant Protection Organization (EPPO), with recommendations to member countries to consider measures to prevent their spread (e.g. banning importation of, banning sale and distribution of, and undertaking control programmes against those species). Belgian initiatives include an upcoming Royal Decree concerning the importation, exportation and possession of non-native invasive species, development of codes of conduct with the horticultural sector and prohibiting the sale, purchase and intentional release of these species in the wild. This article reviews these approaches and discusses other species of concern.     

Populations and trends of Canadian Arctic seabirds

Canada’s eastern Arctic (Nunavut and Arctic Quebec—Nunavik, N of 60°) supports large numbers of seabirds in summer. Seabird breeding habitat in this region includes steep, rocky coasts and low-lying coasts backed by lowland sedge-meadow tundra. The former areas support colonial cliff- and scree-nesting seabirds, such as murres and fulmars; the latter inland or coastal seabirds, such as terns, gulls and jaegers. The region supports some 4 million breeding seabirds, of which the most numerous are thick-billed murres (Uria lomvia; 75%), black guillemots (Cepphus grylle; 9%), northern fulmars (Fulmarus glacialis; 8%) and black-legged kittiwakes (Rissa tridactyla; 6%). The majority of Arctic seabirds breed in a small number of very large colonies (>10,000 birds), but there are also substantial numbers of non-colonial or small-colony breeding populations that are scattered more widely (e.g. terns, guillemots). Population trends among Canadian Arctic seabirds over the past few decades have been variable, with no strongly negative trends except for the rare ivory gull (Pagophila eburnea): this contrasts with nearby Greenland, where several species have shown steep declines. Although current seabird trends raise only small cause for concern, climate amelioration may enable increased development activities in the north, potentially posing threats to some seabirds on their breeding grounds.     

Niche-based modelling as a tool for predicting the risk of alien plant invasions at a global scale

Predicting the probability of successful establishment of plant species by matching climatic variables has considerable potential for incorporation in early warning systems for the management of biological invasions. We select South Africa as a model source area of invasions worldwide because it is an important exporter of plant species to other parts of the world because of the huge international demand for indigenous flora from this biodiversity hotspot. We first mapped the five ecoregions that occur both in South Africa and other parts of the world, but the very coarse definition of the ecoregions led to unreliable results in terms of predicting invasible areas. We then determined the bioclimatic features of South Africa's major terrestrial biomes and projected the potential distribution of analogous areas throughout the world. This approach is much more powerful, but depends strongly on how particular biomes are defined in donor countries. Finally, we developed bioclimatic niche models for 96 plant taxa (species and subspecies) endemic to South Africa and invasive elsewhere, and projected these globally after successfully evaluating model projections specifically for three well‐known invasive species (Carpobrotus edulis, Senecio glastifolius, Vellereophyton dealbatum) in different target areas. Cumulative probabilities of climatic suitability show that high‐risk regions are spatially limited globally but that these closely match hotspots of plant biodiversity. These probabilities are significantly correlated with the number of recorded invasive species from South Africa in natural areas, emphasizing the pivotal role of climate in defining invasion potential. Accounting for potential transfer vectors (trade and tourism) significantly adds to the explanatory power of climate suitability as an index of invasibility. The close match that we found between the climatic component of the ecological habitat suitability and the current pattern of occurrence of South Africa alien species in other parts of the world is encouraging. If species' distribution data in the donor country are available, climatic niche modelling offers a powerful tool for efficient and unbiased first‐step screening. Given that eradication of an established invasive species is extremely difficult and expensive, areas identified as potential new sites should be monitored and quarantine measures should be adopted.     

Biological invasions at the gene level

Despite several recent contributions of population and evolutionary biology to the rapidly developing field of invasion biology, integration is far from perfect. I argue here that invasion and native status are sometimes best discussed at the level of the gene rather than at the level of the species. This, and the need to consider both natural (e.g. postglacial) and human‐induced invasions, suggests that a more integrative view of invasion biology is required.     

Freshwater diatom biogeography in the Canadian Arctic Archipelago

Aim Document the biogeographical distributions of diatoms in the Canadian Arctic in relation to environmental factors. Location The Canadian Arctic Archipelago. Methods Diatoms were extracted from lake sediments and treated using standard methods. Rarefaction‐estimated species richness, diatom concentrations (valves cc^?1), and diatom abundance were mapped using a Geographic Information System. The physical and chemical parameters of the lakes were measured. Results A total of 326 taxa from 63 genera were found in 62 lakes of the study area. Up to 85 and as low as eight taxa were identified in any one lake, and rarefaction‐estimated species richness correlated with lake size. Nearby lakes could have greatly different diatom assemblages. Many taxa showed limited distributions. Response surfaces and ordination techniques indicate that a large number of taxa prefer colder regions of the Arctic while the abundance of others was influenced by lake water chemical parameters such as TKN and SiO₂. Main conclusions Although many taxa were common and found across the study area, diatom assemblages showed regional differences in the Arctic. Some taxa were not found in either the northern or southern parts of the Archipelago and others were restricted to particular regions. Newly delineated genera showed interpretable geographical patterns and could be related to environmental factors, suggesting that this more natural grouping may enhance our understanding of diatom ecology. Geographical, physical, and chemical factors are needed to explain diatom distributions in the Arctic.     

Relative importance of biological and human-associated factors for alien plant invasions in Hokkaido,Japan

AimsThe invasion success of alien plants is strongly affected by both biological and human-associated factors. Evaluation of the relative contribution of each factor is important not only for the further understanding of invasion processes but also for the better management of invasion risk, particularly in protected areas of high conservation priority. Here, we quantified the relative importance of species biological traits and association with a human activity, i.e. agriculture, in explaining the invasion success of alien plants across the entire region and in protected areas in Hokkaido, Japan.     

Longer ice-free seasons increase the risk of nest depredation by polar bears for colonial breeding birds in the Canadian Arctic

Northern polar regions have warmed more than other parts of the globe potentially amplifying the effects of climate change on biological communities. Ice-free seasons are becoming longer in many areas, which has reduced the time available to polar bears (Ursus maritimus) to hunt for seals and hampered bears’ ability to meet their energetic demands. In this study, we examined polar bears’ use of an ancillary prey resource, eggs of colonial nesting birds, in relation to diminishing sea ice coverage in a low latitude region of the Canadian Arctic. Long-term monitoring reveals that bear incursions onto common eider (Somateria mollissima) and thick-billed murre (Uria lomvia) nesting colonies have increased greater than sevenfold since the 1980s and that there is an inverse correlation between ice season length and bear presence. In surveys encompassing more than 1000 km of coastline during years of record low ice coverage (2010–2012), we encountered bears or bear sign on 34% of eider colonies and estimated greater egg loss as a consequence of depredation by bears than by more customary nest predators, such as foxes and gulls. Our findings demonstrate how changes in abiotic conditions caused by climate change have altered predator–prey dynamics and are leading to cascading ecological impacts in Arctic ecosystems.     

Environmental Drivers of the Canadian Arctic Megabenthic Communities

Environmental gradients and their influence on benthic community structure vary over different spatial scales; yet, few studies in the Arctic have attempted to study the influence of environmental gradients of differing spatial scales on megabenthic communities across continental-scales. The current project studied for the first time how megabenthic community structure is related to several environmental factors over 2000 km of the Canadian Arctic, from the Beaufort Sea to northern Baffin Bay. Faunal trawl samples were collected between 2007 and 2011 at 78 stations from 30 to 1000 m depth and patterns in biomass, density, richness, diversity, and taxonomic composition were examined in relation to indirect/spatial gradients (e.g., depth), direct gradients (e.g., bottom oceanographic variables), and resource gradients (e.g., food supply proxies). Six benthic community types were defined based on their biomass-based taxonomic composition. Their distribution was significantly, but moderately, associated with large-scale (100–1000 km) environmental gradients defined by depth, physical water properties (e.g., bottom salinity), and meso-scale (10–100 km) environmental gradients defined by substrate type (hard vs. soft) and sediment organic carbon content. We did not observe a strong decline of bulk biomass, density and richness with depth or a strong increase of those community characteristics with food supply proxies, contrary to our hypothesis. We discuss how local- to meso-scale environmental conditions, such as bottom current regimes and polynyas, sustain biomass-rich communities at specific locations in oligotrophic and in deep regions of the Canadian Arctic. This study demonstrates the value of considering the scales of variability of environmental gradients when interpreting their relevance in structuring of communities.     

Semi-automated image analysis for the assessment of megafaunal densities at the Arctic deep-sea observatory HAUSGARTEN

Megafauna play an important role in benthic ecosystem function and are sensitive indicators of environmental change. Non-invasive monitoring of benthic communities can be accomplished by seafloor imaging. However, manual quantification of megafauna in images is labor-intensive and therefore, this organism size class is often neglected in ecosystem studies. Automated image analysis has been proposed as a possible approach to such analysis, but the heterogeneity of megafaunal communities poses a non-trivial challenge for such automated techniques. Here, the potential of a generalized object detection architecture, referred to as iSIS (intelligent Screening of underwater Image Sequences), for the quantification of a heterogenous group of megafauna taxa is investigated. The iSIS system is tuned for a particular image sequence (i.e. a transect) using a small subset of the images, in which megafauna taxa positions were previously marked by an expert. To investigate the potential of iSIS and compare its results with those obtained from human experts, a group of eight different taxa from one camera transect of seafloor images taken at the Arctic deep-sea observatory HAUSGARTEN is used. The results show that inter- and intra-observer agreements of human experts exhibit considerable variation between the species, with a similar degree of variation apparent in the automatically derived results obtained by iSIS. Whilst some taxa (e. g. Bathycrinus stalks, Kolga hyalina, small white sea anemone) were well detected by iSIS (i. e. overall Sensitivity: 87%, overall Positive Predictive Value: 67%), some taxa such as the small sea cucumber Elpidia heckeri remain challenging, for both human observers and iSIS.     

Carbon sources for lake food webs in the Canadian High Arctic and other regions of Arctic North America

We investigated the role of autochthonous and terrestrial carbon in supporting aquatic food webs in the Canadian High Arctic by determining the diet of the dominant primary consumer, aquatic chironomids. These organisms were studied in fresh waters on 3 islands of the Arctic Archipelago (~74–76°N) including barren polar desert watersheds and a polar oasis with lush meadows. Stomach content analysis of 578 larvae indicated that chironomids primarily ingested diatoms and sediment detritus with little variation among most genera. Carbon and nitrogen stable isotope mixing models applied to 2 lakes indicated that benthic algae contributed 68–95% to chironomid diet at a polar desert site and 70–78% at a polar oasis site. Detritus, originating from either phytoplankton or terrestrial sources, also contributed minor amounts to chironomid diet (0–32%). Radiocarbon measurements for the 2 lakes showed that old terrestrial carbon did not support chironomid production. Carbon stable isotope ratios of chironomids in other High Arctic lakes provided further dietary evidence that was consistent with mixing model results. These findings indicate that, in the Canadian High Arctic, chironomids (and fish that consume them) are supported primarily by benthic algae in both polar desert and oasis lakes. In contrast, our review of carbon flow studies for lakes in other Arctic regions of North America shows that terrestrial carbon and phytoplankton can be important energy sources for consumers. This study provides a baseline to detect future climate-related impacts on carbon pathways in High Arctic lakes.     

Regional assessment of plant invasions across different habitat types

Questions: 1. Which habitats have the highest degree of invasion? 2. Do native species-rich communities have also a high degree of invasion? 3. Do the patterns of association between native and alien species richness vary between habitats. Location: Catalonia region (NE Spain). Methods: We conducted a large regional analysis of 15655 phytosociological relevés to detect differences in the degree of invasion between European Nature Information System (EUNIS) habitats representative of temperate and Mediterranean European areas. Results: Alien species were present in less than 17 % of the relevés and represented less than 2% of the total number of species per habitat. The EUNIS habitats with the highest alien species richness were arable land and gardens followed by anthropogenic forb-rich habitats, riverine and lakeshore scrubs, southern riparian galleries and thickets and trampled areas. In contrast, the following habitats had never any alien species: surface running waters, raised and blanket bogs, valley mires, poor fens and transition mires, base-rich fens, alpine and sub-alpine grasslands, sub-alpine moist or wet tall-herb and fern habitats, alpine and sub-alpine scrub habitats and spiny Mediterranean heaths. There was a unimodal relationship between the mean native and mean alien species richness per EUNIS habitat with a high number of aliens in habitats with intermediate number of native species and a low number of aliens at both extremes of the native species gradient. Within EUNIS habitats, the relationship was positive, negative or non-significant depending on the habitat type without any clear pattern related to the number of native species. Alien species richness was not related to plot size, neither between habitats nor within habitats. Conclusions: The analysis emphasised that the habitats with a higher degree of invasion were the most disturbed ones and that in general habitats rich in native species did not harbour less invaders than habitats poor in native species.     

机场鸟撞防制中的鸟类风险评价

机场的鸟类由于其所处位置的特殊性,会对飞行安全造成一定威胁。各种鸟类因其自身特征,风险大小也各有不同。在实际调查的基础上,建立了风险评价指标体系,构建了机场鸟类风险评价的实用数学模型,给出了一种度量鸟类风险的简单、合理的科学方法,并就具体实例进行了分析研究。计算结果表明,在所有观察到的70种鸟类中,风险很大者占总数的24.29%,风险较大者占30.00%,风险一般者占30.00%,风险较小者占15.71%。其中风险很大和较大的鸟类应是机场重点防治的对象。就各鸟类的单个风险评价指标也给出了定量结果。以上风险分析结果,为鸟类风险评价和机场鸟害防治提供了定量依据。     

Relative Incidence of Ascomycetous Yeasts in Arctic Coastal Environments

Previous studies of fungi in polar environments have revealed a prevalence of basidiomycetous yeasts in soil and in subglacial environments of polythermal glaciers. Ascomycetous yeasts have rarely been reported from extremely cold natural environments, even though they are known contaminants of frozen foods. Using media with low water activity, we have isolated various yeast species from the subglacial ice of four glaciers from the coastal Arctic environment of Kongsfjorden, Spitzbergen, including Debaryomyces hansenii and Pichia guillermondii, with counts reaching 10⁴ CFU L⁻¹. Together with the basidiomycetes Cryptococcus liquefaciens and Rhodotorula mucilaginosa, these yeasts represent the stable core of the subglacial yeast communities. Other glacial ascomycetous species isolated included Candida parapsilosis and a putative new species that resembles Candida pseudorugosa. The archiascomycete Protomyces inouyei has seldom been detected anywhere in the world but was here recovered from ice in a glacier cave. The glacier meltwater contained only D. hansenii, whereas the seawater contained D. hansenii, Debaryomyces maramus, Pichia guilliermondii, what appears to represent a novel species resembling Candida galli and Metschnikowia bicuspidata. Only P. guilliermondii was isolated from sea ice, while snow/ice in the fjord tidal zone included C. parapsilosis, D. hansenii, P. guilliermondii and Metschnikowia zobellii. All of these isolated strains were characterized as psychrotolerant and xero/halotolerant, with the exception of P. inouyei.     

Low temperature S(0) biomineralization at a supraglacial spring system in the Canadian High Arctic

Elemental sulfur (S(0) ) is deposited each summer onto surface ice at Borup Fiord pass on Ellesmere Island, Canada, when high concentrations of aqueous H(2) S are discharged from a supraglacial spring system. 16S rRNA gene clone libraries generated from sulfur deposits were dominated by β-Proteobacteria, particularly Ralstonia sp. Sulfur-cycling micro-organisms such as Thiomicrospira sp., and ε-Proteobacteria such as Sulfuricurvales and Sulfurovumales spp. were also abundant. Concurrent cultivation experiments isolated psychrophilic, sulfide-oxidizing consortia, which produce S(0) in opposing gradients of Na(2) S and oxygen. 16S rRNA gene analyses of sulfur precipitated in gradient tubes show stable sulfur-biomineralizing consortia dominated by Marinobacter sp. in association with Shewanella, Loktanella, Rubrobacter, Flavobacterium, and Sphingomonas spp. Organisms closely related to cultivars appear in environmental 16S rRNA clone libraries; none currently known to oxidize sulfide. Once consortia were simplified to Marinobacter and Flavobacteria spp. through dilution-to-extinction and agar removal, sulfur biomineralization continued. Shewanella, Loktanella, Sphingomonas, and Devosia spp. were also isolated on heterotrophic media, but none produced S(0) alone when reintroduced to Na(2) S gradient tubes. Tubes inoculated with a Marinobacter and Shewanella spp. co-culture did show sulfur biomineralization, suggesting that Marinobacter may be the key sulfide oxidizer in laboratory experiments. Light, florescence and scanning electron microscopy of mineral aggregates produced in Marinobacter experiments revealed abundant cells, with filaments and sheaths variably mineralized with extracellular submicron sulfur grains; similar biomineralization was not observed in abiotic controls. Detailed characterization of mineral products associated with low temperature microbial sulfur-cycling may provide biosignatures relevant to future exploration of Europa and Mars.