Targeted inactivation of the gene psaK encoding a subunit of photosystem I from the cyanobacterium Synechocystis sp. PCC 6803

Mutant strains of the unicellular cyanobacterium Synechocystissp. PCC 6803, in which the psaK gene was insertionally inactivatedby targeted mutagenesis, were constructed. The gene is one ofthe two potential PsaK-coding genes which have been found asa result of the genome project with this cyanobacterium. Oneof the mutants was characterized in detail. A monocistronic,480-nucleotide mRNA of psaK was absent in total RNA from themutant cells. Inactivation of psaK had little effect on theaccumulation of polypeptides in the isolated PSI complexes exceptfor a polypeptide with an apparent molecular mass of 4.6 kDawhich was absent in the mutant. The amino-terminal amino acidsequence of the 4.6-kDa polypeptide confirmed that it was thetranslation product of psaK and further revealed a presequenceof PsaK. Characteristics of photoautotrophic growth at differenttemperatures, the amount of chlorophyll per cell, photosyntheticelectron transport rates with various electron acceptors, thekinetics of charge recombination between P700⁺ and reduced F_A/F_B,and the molar ratio of chlorophyll to P700, of the mutant werenot significantly different from those of the wild type. Furthermore,the trimer to monomer ratio of the PSI complexes isolated fromthe mutant was similar to that isolated from the wild type. (Received July 27, 1998; Accepted October 13, 1998)     

Isolation of Chinese hamster ovary cell lines expressing human acyl- coenzyme A/cholesterol acyltransferase activity

We have previously reported the isolation of Chinese hamster ovary cell mutants deficient in acylcoenzyme A/cholesterol acyltransferase (ACAT) activity (Cadigan, K. M., J. G. Heider, and T. Y. Chang. 1988, J. Biol. Chem. 263:274-282). We now describe a procedure for isolating cells from these mutants that have regained the ability to synthesize cholesterol esters. The protocol uses the fluorescent stain Nile red, which is specific for neutral lipids such as cholesterol ester. After ACAT mutant populations were subjected to chemical mutagenesis or transfected with human fibroblast whole genomic DNA, two revertants and one primary transformant were isolated by virtue of their higher fluorescent intensities using flow cytofluorimetry. Both the revertants and transformant have regained large amounts of intracellular cholesterol ester and ACAT activity. However, heat inactivation experiments revealed that the enzyme activity of the transformant had heat stability properties identical to that of human fibroblasts, while the ACAT activities of the revertants were similar to that of other Chinese hamster ovary cell lines. These results suggest that the molecular lesion in the ACAT mutants resides in the structural gene for the enzyme, and the transformant has corrected this defect by acquiring and stably expressing a human gene encoding the ACAT polypeptide. Secondary transformants were isolated by transfection of ACAT mutant cells with primary transformant genomic DNA. Genomic Southern analysis of the secondary transformants using a probe specific for human DNA revealed several distinct restriction fragments common to all the transformants which most likely comprise part or all of the human ACAT gene. The cell lines described here should facilitate the cloning of the gene encoding the human ACAT enzyme.     

Molecular cloning, primary structure, and expression of the human growth factor-activatable Na+/H+ antiporter

We present the complete sequence of a cDNA encoding the human amiloride-sensitive Na+/H+ antiporter. After functional complementation of a mouse fibroblast mutant by gene transfer, we isolated a 0.8 kb genomic probe from a third-cycle mouse transformant. The probe detects gene amplification in Na+/H+ antiporter "overexpressers" and a single class of mRNA of ca. 5.6 kb in human, mouse, and hamster cells. With this probe we isolated a 4 kb cDNA from a library constructed from a mouse transformant in which the transfected human gene was amplified. This cDNA includes a noncoding leader of 407 bp, a 2682 bp open reading frame, and a 3' noncoding sequence containing a mouse B1 repeated element. The amino acid sequence predicts a protein of Mr = 99,354 with an N-terminal amphipathic domain that contains 10 putative transmembrane-spanning segments and two potential glycosylation sites, followed by a hydrophilic stretch of 395 residues, presumably cytoplasmic. Stable expression of the transfected cDNA in Na+/H+ antiporter-deficient cells restored the key functional features of this transporter: H+i-activated Na+ influx, amiloride sensitivity, and pHi regulation.     

Nucleotide Sequence Surrounding the Locus Marker D21S246 on Human Chromosome 21

Most ofthe human Not I linking clones identified to date areconsidered to be derived from CpG islands because ofthe recognitionsequence of this enzyme, and CpG islands have been reportedto be located around the 5' regions of genes. As a pilot study,we determined the complete nucleotide sequence (41,924 bp) ofa human cosmid clone (LL21NC02Q7A10) containing the marker D21S246originating from a Not I linking clone. As a result of sequenceanalysis, we successfully mapped and revealed the genomic genestructure for KIAA0002 previously reported as a cDNA clone.This gene consists of 15 exons and was shown to exist at theD21S246 locus on human chromosome 21q21.3–q22.1. Theseresults demonstrated that genomic marker-anchored DNA sequencingis a useful approach for the human genome project.     

Light-Dependent Expression of Protochlorophyllide Oxidoreductase Gene in the Liverwort, Marchantia paleacea var. diptera

A cDNA encoding the NADPH:protochlorophyllide oxidoreductase(EC 1.6.99.1 [EC] ) was isolated from suspension-cultured cells ofthe liverwort, Marchantia paleacea var. diptera. In contrastto the situation in most higher plants, the liverwort gene wasexpressed in a light-dependent manner. ²Present address: Department of Biological Science, Facultyof Science, Kumamoto University, Kurokami, Kumamoto, 860-8555Japan.     

A Mutant of Arabidopsis thaliana That Defines a New Locus for Glycine Decarboxylation

A novel photorespiratory mutant of Arabidopsis thaliana, designatedgld2, was isolated based on a growth requirement for abnormallyhigh levels of atmospheric CO₂. Photosynthetic CO₂ fixationwas inhibited in the mutant following illumination in air butnot in atmosphere containing 2% O₂. Photosynthetic assimilationof ¹⁴CO₂ in an atmosphere containing 50% O₂ resulted in accumulationof 48% of the soluble label in glycine in the mutant comparedto 9% in the wild type. The rate of glycine decarboxylationby isolated mitochondria from the mutant was reduced to 6% ofthe wild type rate. In genetic crosses, the mutant complementedtwo previously described photorespiratory mutants of A. thalianathat accumulate glycine during photosynthesis in air due todefects in glycine decarboxylase (glyD, now designated gld1)and serine transhydroxymethylase (stm). Because glycine decarboxylaseis a complex of four enzymes, these results are consistent witha mutation in a glycine decarboxylase subunit other than thataffected in the gld1 mutant. The two gld loci were mapped tochromosomes 2 and 5, respectively. ³Present address: Department of Crop and Soil Sciences, MichiganState University, East Lansing, MI 48824, U.S.A. ⁴Present address: Department of Applied Bioscience, Facultyof Agriculture, Hokkaido University, Kita-Ku, Sapporo, 060 Japan ⁵Present address: Department of Biology, Carnegie Institutionof Washington, 290 Panama Street, Standford, CA 94305, U.S.A.     

Structure of the Gene for an Auxin-Binding Protein and a Gene for 7SL RNA from Arabidopsis thaliana

A genomic clone encoding an auxin-binding protein (ABP) fromthe endoplasmic reticulum was isolated from Arabidopsis thaliana.The ABP gene consisted of 5 exons and 4 introns and encodeda polypeptide of 198 residues. A gene encoding the 7SL RNA ofthe signal recognition particle was located downstream of theABP gene. ⁴Recipient of a scholarship from the National Education Commission,People's Republic of China.     

Biosynthesis of Abscisic Acid in the Fungus Cercospora cruenta: Stimulation of Biosynthesis by Water Stress and Isolation of a Transgenic Mutant with Reduced Biosynthetic Capacity

The rate of synthesis of abscisic acid (ABA) by the phytopathogenicfungus Cercospora cruenta was found to be increased 2.6-foldby water stress (0.5 M mannitol, 48 h). To characterize theoxidative steps in the synthesis of ABA by C. cruenta, a mutantstrain deficient in the synthesis of ABA was isolated aftertransformation with a foreign gene. This strain was furthercharacterized by an immunoassay using a monoclonal antibodyspecific for 1',4'-dihydroxy--ionylidene-acetate. One transformantthat seemed likly to be deficient in the synthesis of ABA wasisolated. Integration of the foreign gene into the chromosomalDNA of the transformant was confirmed by Southern hybridization. ³Present address: Nitto Chemical Industries Co. Ltd.Chiyodaku,Tokyo, 100 Japan     

A novel {beta}-galactosidase gene isolated from the bacterium Xanthomonas manihotis exhibits strong homology to several eukaryotic {beta}-galactosidases

The gene encoding a ß-galactosidase from Xanthomonasmanihotis was cloned into Escherichia coli. The gene resideson a 2.4 kb DNA fragment which was isolated from a partial Sau3Alibrary in the cloning vector pUC19 using 5-bromo-4-chloro-3-indolyl-ß-D-galactopyranoside(X-gal) as the selection. The enzyme produced by the clone hasa specificity for ß1-3->ß1-4-linked galactose.The nucleotide sequence of the gene was determined. The deducedprotein sequence contained 597 amino acids yielding a monomericmolecular mass of 66 kDa. The cloned ß-galactosidaseshowed no similarity to any known prokaryotic ß-galactosidase.However, extensive similarity was observed with eukaryotic ß-galactosidasesfrom animals, plants and fungi. The strongest similarity waswith the ß-galactosidases found hi the human and mouselysosomes (42 and 41% identity, respectively). Alignment ofthe X.manihotis and eukaryotic ß-galactosidase sequencesrevealed seven highly conserved domains common to each protein.Additionally, Domain 1 in X.manihotis showed similarity to regionswithin catalytic domains from seven xylanases and cellulasesbelonging to family 10 of glucosyl hydrolases. A region spanningDomain 2 showed similarity to the catalytic domain of endo ß1-3glucanases from tobacco and barley. cellulase ß-galactosidase G_M$$$gangliosidosis Morquio B syndrome Xanthomonas     

Phenotypic Characterization and Molecular Mapping of an acaulis2 Mutant of Arabidopsis thaliana with Flower Stalks of Much Reduced Length

An acaulis2-1 (acl2-1) mutant of Arabidopsis thaliana (L.) Heynh.was isolated and characterized. The mutant had inflorescencesof much reduced length. The defect was severer in lower internodesand was visible preferentially in type 2 metamers. The defectin the elongation of internodal cells of inflorescences wasattributable to a defect in the mechanism for elongation ofthese cells. The cortical microtubules (MTs) were analyzed inthe acl2 mutant, in a comparison with those of an acl1 mutantwhich was described earlier, but no changes were detected inamounts of MTs. In the type 2 and type 3 metamers, the defectin elongation in acl mutants was loosely correlated with a changein the orientation of MTs. Thus, the abnormal arrangement ofMTs appears to be one of the pleiotropic effects of acaulismutations. Genetic mapping was performed using molecular markers and theACL2 gene was located at 100 map units on chromosome 1. ¹Present address: Institute of Molecular and Cellular Biosciences,The University of Tokyo, Yayoi, Bunkyo-ku, Tokyo, 113 Japan ²Present address: Division of Biological Sciences, GraduateSchool of Science, Hokkaido University, Kita-ku, Sapporo, 060Japan     

Polygenic Control of Drosophila Morphogenesis During the Stages of Determination and Specification of Adult Structures

There are three processes in the development of Drosophila whichmay be studied independendy but which are a manifestation ofinterdependent events which result in the formation of the adultphenotype. These processes are determination, specificationand differentiation. The mutant phenotype Abnormal-abdomen ischaracterized by a loss of abdominal tergites and is controlledby a major mutant gene,A^53g and a polygenic modifier system.The development of the abnormal phenotype is influenced by eventsin early embryogenesis and in mid-larval stages. These developmentallysensitive stages are correlated with the periods of determinationand specification of the cells which constitute the larval histoblastnests and which differentiate into the adult abdominal hypoderm.Evidence for gene control at these two development stages are1) a maternal effect of the genome correlated with changes inthe efficiency of enzymes catalyzing tRNA aminoacylating reactions,2) observations which relate histological defects of embryosat the blastoderm stage to the action of the mutant genotype,and 3) a temperature sensitive period for the expression ofthe abnormal phenotype which has defined limits in the latesecond and early third larval instars. Developmental eventswhich take place during oogenesis, early embryogenesis, andmid-larval stages are discussed with regard to their relationshipto each other and to the final differentiation of the adultphenotype.