Systemic candidiasis in farm-reared red-legged partridges (Alectoris rufa) caused by Leucosporidium spp

Background

Canine noroviruses (NoVs) have been recently described in south European countries and associated with outbreaks of diarrhea in kennels. Unlike human NoV which are known as an important cause of acute gastroenteritis, little is known about the role of canine NoV as pathogens in dogs as well as its epidemiological features.

Results

From 2007?C2011, 256 stool samples were collected from dogs across Portugal and tested by RT-PCR for canine NoV. Viral fecal shedding was found to be 23% (60/256). All sequences contained the GLPSG amino acid motif characteristic of the RNA-dependent RNA-polymerase gene of NoVs and had a high nucleotide identity (range 98%?C100%) to the canine NoV first described in Portugal. The highest shedding rate was detected during the winter months.

Conclusions

This study shows that canine NoV infection is endemic in the dog population of Portugal. Peak shedding was detected in the winter months, a well-known epidemiologic feature of human NoV infections.     

Variation in plasma biochemical parameters in captive adult red-legged partridges (Alectoris rufa) during daylight hours

Blood biochemical parameters may provide useful information about the physical condition of the individual, making them a useful tool in ecological studies. However, to avoid biases, factors affecting circulating levels of plasma metabolites must be investigated. In this paper, we analyse the effect of daytime sampling hour on seven plasma metabolites in adult red-legged partridges (Alectoris rufa) with free access to food during the breeding season. We found that sampling hour affected circulating levels of glucose and triglycerides but not those of cholesterol, total protein, uric acid, urea or albumin. A sex effect was found only for glucose, uric acid, urea and triglycerides. Repeated sampling affected all the parameters studied. These results suggest that the effect of sex, sampling hour and repeated sampling should be carefully controlled for (methodologically or by statistical procedures) to avoid undesirable sources of error at least in some blood parameters.     

Effects of a fiber-rich diet on physiology and survival of farm-reared red-legged partridges (Alectoris rufa)

The sudden shift from a commercial energy-rich, fiber-poor diet to natural food is assumed as one of the causes of the low success of gamebird restocking. We fed farmed red-legged partridge (Alectoris rufa) chicks with a diet rich in fiber from their first month of life to the time of their release to assess the possible effects on morphometric characteristics and plasma biochemistry and whether those effects enhance survival after release into the wild. At the time of release, treated partridges showed heavier gizzards and bursas of Fabricius and longer small intestines than control birds fed commercial feed. Treated birds had also smaller pectoral muscles, lighter spleens and lower plasma levels of proteins, glucose, cholesterol and triglycerides. After release and radiotracking in a hunting area, we found no differences in the survival between both groups. Survival at the end of the study (day 39) was 58.3+/-14.2% for the control group and 24.2+/-13.8% for the treated group. The fiber-rich diet seems to have important effects on the physiology of the red-legged partridge, not always taken into account in previous studies.     

A quantitative assessment of the release of farm-reared red-legged partridges (Alectoris rufa) for shooting in central Spain

The release of farm-reared game is considered a conflictive management tool because of its potential harmful ecological effects on wildlife and associated habitats. Estimates of the number of animals released and the area where this game management takes place could give an idea of the magnitude of their potential impacts. We aimed to quantitatively assess the release of farm-reared red-legged partridges (Alectoris rufa) in the province of Ciudad Real, central Spain, one of the main hunting areas in this country. We analysed the official permits that the regional government granted to the hunting estates to release farm-reared partridges between 2006 and 2012. Our results show that an average of 800,000 partridges were released annually in the study area. A decrease in the number of hunting estates that used this game management practice, as well as in the number of red-legged partridges officially released, was observed during the last years within the study period. This might be a consequence of the current economic crisis, rather than a change in management styles. Release intensity was spatially heterogeneous, being higher in the southeast of the study area, where historically red-legged partridge was more abundant. Most of the red-legged partridges released came from only four farms placed in northern Spain. Our results suggest that this management activity should be better monitored and that spatial regulations should also be considered.     

Escape-reaction of captive young red-legged partridges (Alectoris rufa) reared with or without visual contact with man

It was noted that adult birds of Alectoris rufa, hatched and reared in captivity, cannot survive in nature after their release for restocking for hunting. An attempt was made to ascertain what effect various kinds of visual experiences with man during the first 2 months of life might have on the escape-response of young individuals.It was observed that absence of visual contact with man during the 48 h after hatching causes fear of human beings in those individuals when 2 months old. Conversely, subjects which were in visual contact with man during the 48 h after hatching did not show this tendency to escape in front of him.The possible links between this finding and the phenomenon of imprinting, together with the need for new rearing techniques, are discussed.     

Recruitment of grey and red-legged partridges (Perdix perdix and Alectoris rufa) in relation to population density and habitat

The recruitment of first-year grey and red-legged partridges into subsequent breeding populations was investigated on 17 study areas in Britain.
The density of birds recruited per unit area increased with the density of birds available in their first autumn for potential recruitment in the following spring but decreased with adult density. The relationship between recruitment and adult density, while always negative, differed significantly between areas. These differences were correlated with variation in the amount of nesting habitat available to both species of partridge and with variation in nesting habitat quality. Recruitment of grey partridges was related to length of available nesting habitat, the amount of residual dead grass in the nesting cover, and earth bank height at the base of the nesting cover. Recruitment of red-legged partridges was also related to length of nesting habitat, together with the amount of nettle in the nesting cover.
It is suggested that the attractiveness of different areas to settling recruits is determined by the amount and quality of nesting habitat available.     

New data on mortality,home range,and dispersal of red-legged partridges (Alectoris rufa) released in a mountain range

We tested the success, dispersal, and home range of 20 radio-tagged farm-reared red-legged partridges that were released into typical Mediterranean scrubland on a coastal mountain in southern Spain. Partridges were kept in two acclimatization pens separated by 1 km for 4 weeks. Mortality was 25% during the first 10 days, 51.9% at the end of the second month, and stopped by the 14th week after release. The overall survival rate was 20.6%. Mean dispersal distance was 832 m; home range (MPC 95%), 16.6 ha; and activity centers (Kernel 60%), 15.1 ha. Two released females paired with wild males and one of them successfully nested.     

Daily variations of blood biochemical parameters in the red-legged partridge (Alectoris rufa)

The study of blood chemistry provides important information about many aspects of the biology and physiology of animals. It is known that many factors can influence the results of such analyses. A proper knowledge of these effects is necessary to correctly interpret the results. In this paper, we analyzed the daily variations of blood biochemical parameters of 32 captive red-legged partridges (Alectoris rufa) of both sexes to test the effect of the daily cycle on these parameters. We found daily variation in glucose, cholesterol, uric acid, triglycerides, and calcium, but not in total protein and creatinine. A sex effect was only significant in uric acid. The most reliable data were those obtained from blood samples collected in midday hours. Hence, this time is suggested for blood-sampling in future studies.     

Land use and environmental factors affecting red-legged partridge (Alectoris rufa) hunting yields in southern Spain

The red-legged partridge is a small game species widely hunted in southern Spain. Its commercial use has important socioeconomic effects in rural areas where other agrarian uses are of marginal importance. The aims of the present work were to identify areas in Andalusia (southern Spain) where game yields for the red-legged partridge reach high values and to establish the environmental and land use factors that determine them. We analysed 32,134 annual hunting reports (HRs) produced by 6,049 game estates during the hunting seasons 1993/1994 to 2001/2002 to estimate the average hunting yields of red-legged partridge in each Andalusian municipality (n=771). We modelled the favourability for obtaining good hunting yields using stepwise logistic regression on a set of climatic, topographical, land use and vegetation variables that were available as digital coverages or tabular data applied to municipalities. Good hunting yields occur mainly in plain areas located in the Guadalquivir valley, at the bottom of Betic Range and in the Betic depressions. Favourable areas are related to highly mechanised, low-elevation areas mainly dedicated to intensive dry crops. The most favourable areas predicted by our model are mainly located in the Guadalquivir valley.     

The rally call recognition in males of two hybridizing partridge species, red-legged (Alectoris rufa) and rock (A. graeca) partridges

The red-legged (Alectoris rufa) and rock (A. graeca) partridges hybridize and produce fertile offspring along a contact zone in French Southern Alps. The rally call emitted during pair formation, could play an important role in species recognition, acting as a behavioral reproductive isolating mechanism between males and females. In the present study, the coding system of the rally call was investigated from captive males of the two species and from F1 hybrids. By playing-back natural signals, we found that the two species as well as hybrid males responded to Alectoris signals but not to another species belonging to the Phasianidae family (Colinus virginianus). Results also indicate that red-legged and rock partridges responded stronger to conspecific calls than to heterospecific ones. However, they reacted similarly to conspecific and hybrid calls. F1 hybrids responded stronger to hybrids calls than to the two species ones. They did not distinguish the two parental species signals from each other. Although the two species showed the ability to discriminate the conspecific from the heterospecific signal, they clearly responded to the other species. This behaviour may play a role in the hybridization phenomenon.     

The effects of fasting and refeeding on biochemical parameters in the red-legged partridge (Alectoris rufa)

Every year, about three million farm-reared red-legged partridges are released in Spain for hunting purposes, most of them for restocking where the success is very low. Some factors such as the sudden shift from abundant commercial energy-rich diet to natural food and absence of experience at looking for natural food resources could cause a rapid physical deterioration, being more vulnerable to predation and disease. To determine fasting capacity in red-legged partridges, we fasted 32 birds during 4 days and then we refed them, collecting blood samples and body masses during the experiment. Red-legged partridges entered in the third critic phase of fasting, in which body proteins became the main energetic source, after 48 h of fasting. The fasting period caused an average loss of 17% of their initial body mass and only attained a 93.6% of their initial body mass after 24 days of refeeding. The limited capacity to resist fasting in the red-legged partridge could be one of the reasons for the low success in restocking, mainly in those where neither supplementary feeding nor acclimation period is allowed for birds before they are finally released.     

Fitness consequences of anthropogenic hybridization in wild red-legged partridge (Alectoris rufa, Phasianidae) populations

Hybridization is a widespread phenomenon, which plays crucial roles in the speciation of living beings. However, unnatural mixing of historically isolated taxa due to human-related activities has increased in recent decades, favouring levels of hybridization and introgression that can have important implications for conservation. The wild red-legged partridge (Alectoris rufa, Phasianidae) populations have recently declined and the releases of farm-reared partridges have become a widespread management strategy. The native range of the red-legged is limited to the south-west of Europe (from Italy to Portugal). This species does not breed in sympatry with the chukar partridge (A. chukar), whose range is Eurasian (from Turkey to China). However, red-legged partridges have often been hybridized with chukar partridges to increase the productivity of farmed birds, and game releases may have spread hybrid birds into the wild. In this study, we investigated the fitness (survival and breeding) differences between hybrid and “pure” red-legged partridges in a wild population located in central Spain. Incubation probability was similar in hybrids and “pure” partridges. Hybrid females laid larger clutches than “pure” ones, but hatching success did not differ between hybrid and “pure” partridges. Hybrid birds had lower survival rate than “pure” ones, mainly because of higher predation rates. Our results show that, despite lower survival, hybrid partridges breed in natural populations, so this could increase extinction risk of wild pure partridge populations, through releases of farmed hybrid birds. The consequences of continued releases could be of vital importance for the long term conservation of wild red-legged partridges.     

Correlates of helminth community in the red-legged partridge (Alectoris rufa L.) in Spain

Between 1992 and 1996, 587 wild red-legged partridges (Alectoris rufa) from 16 Spanish provinces were examined to study the variations of helminth communities in this game species across a broad geographical area. The survey revealed 13 species of helminth parasites. Dicrocoelium sp.. Rhabdometra nigropunctata, and Cheilospirura gruweli were the most common species, whereas Raillietina bolivari, Choanotaenia infundibulum, Tetrameres sp., and Capillaria anatis were the most rare. Subulura suctoria, Heterakis gallinarum, Heterakis tenuicaudata, Capillaria contorta, Trichostrongylus tenuis, and Raillietina tetragona occurred with intermediate frequencies. The abundance of C. gruweli, S. suctoria, H. tenuicaudata, T. tenuis, and R. tetragona was inversely correlated to latitude and directly correlated to yearly mean temperature, whereas the abundance of Dicrocoelium sp. was directly correlated to latitude and inversely correlated to yearly mean temperature. The abundance of R. tetragona was inversely correlated to latitude and yearly mean humidity. The number of helminths per partridge and the number of helminth species per partridge were lower in young birds than in adults. Partridge body condition was inversely correlated to abundance of C. contorta. Richer infracommunities were linked to richer component communities. At the infracommunity level, total number of helminths per partridge and number of helminth species per partridge were inversely correlated to latitude and directly correlated to yearly mean temperature. At the component community level, both species richness and diversity (Simpson's index) were inversely correlated to latitude and directly correlated to mean temperature. Across the broad geographical range of the study area, the helminth parasite communities of red-legged partridges had marked geographical variation in their structure. Our results suggest that this variation is determined by the distribution of both intermediate and definitive hosts. We discuss the implications of this variation for the hypothesis that supplementary releases of captive-bred partridges for sport hunting can affect the helminth fauna of wild red-legged partridges.     

Introgression of chukar genes into a reintroduced red-legged partridge (Alectoris rufa) population in central Italy

Insight regarding the genetic origin and composition of the studied population of the red-legged partridge (Alectoris rufa) is likely to provide general and critical information for the appropriate management and possible conservation of the species. The reintroduced population of red-legged partridges living in Pianosa Island (National Park Tuscany Archipelago) has proven to be sustainable: captive-bred individuals, morphologically assigned to the taxon A. rufa, were released to the island approximately 20 years ago, establishing an apparently well-adapted population. We have investigated this population by means of 10 microsatellite loci in order to shed light on its genetic structure. Considering that A. rufa is known to crossbreed with A. chukar, the Pianosa Island population was compared at the molecular level with a red-legged partridge breeding stock (Aulla, MS) as well as with a population of pure A. chukar. Our results indicate that the red-legged partridge population from Pianosa, morphologically identified as A. rufa, is actually partly introgressed with A. chukar, questioning its genetic purity and the possible use of this population as a starting stock for future reintroductions elsewhere.     

Ectoparasite ticks and chewing lice of red-legged partridge,Alectoris rufa,in Spain

During the 1992-1993 and 1993-1994 shooting seasons, 212 wild red-legged partridge, Alectoris rufa (Galliformes: Phaisanide) were captured in 18 Spanish provinces and examined for chewing lice and ticks. Three tick species and six species of chewing lice were found. Ticks (Acari: Ixodidae) Haemaphysalis punctata Canestrini & Fanzago, Hyalomma lusitanicum Koch and Ixodes frontalis Panzer were found at the lowest prevalence (1.4% overall tick prevalence). The louse (Mallophaga) species, Goniodes dispar Burmeister (Goniodidae) (52.8%) and Cuclotogaster obscurior Hopkins (Philopteridae) (28.8%) were the most prevalent, while Goniocotes obscurus Giebel (Philopteridae) (10.8%), Menopon pallens Clay (Menoponidae) (7.5%) and Menacanthus lyali Rodriguez et al. (Menoponidae) (3.3%) were found at medium to low prevalence. Columbicola columbae columbae Linnaeus (Philopteridae) was found at the lowest prevalence (0.5%). The intensity of C. obscurior and overall intensity of all lice species were directly related to the environmental mean temperature and the Normalized Difference Vegetation Index (NDVI), whereas intensity of G. dispar was directly related to NDVI only. The intensity of G. dispar, C. obscurior, all louse intensity, and louse species richness were higher in male than female birds. Intensity of each louse species, all louse intensity and louse species richness were inversely associated with the nutritional index. No relationship was observed between bird age and louse intensity or species richness.     

Parasites, condition, immune responsiveness and carotenoid-based ornamentation in male red-legged partridge Alectoris rufa

Sexual ornaments might indicate better condition, fewer parasites or a greater immune responsiveness. Carotenoid-based ornaments are common sexual signals of birds and often influence mate choice. Skin or beaks pigmented by carotenoids can change colour rapidly, and could be particularly useful as honest indicators of an individual's current condition and/or health. This is because carotenoids must be acquired through diet and/or allocation for ornamental coloration might be to the detriment of self-maintenance needs. Here, we investigated whether the carotenoid-based coloration of eye rings and beak of male red-legged partridges Alectoris rufa predicted condition (mass corrected for size), parasite load (more specifically infection by coccidia, a main avian intestinal parasite) or a greater immune responsiveness (swelling response to a plant lectin, phytohaemagluttinin, or PHA). Redness of beak and eye rings positively correlated with plasma carotenoid levels. Also, males in better condition had fewer coccidia, more circulating carotenoids and a greater swelling response to PHA. Carotenoid-based ornamentation predicted coccidia abundance and immune responsiveness (redder males had fewer coccidia and greater swelling response to PHA), but was only weakly positively related to condition. Thus, the carotenoid pigmentation of beak and eye rings reflected the current health status of individuals. Our results are consistent with the hypothesis that allocation trade-offs (carotenoid use for ornamentation versus parasite defence needs) might ensure reliable carotenoid-based signalling.     

Phylogeography and genetic structure of the red-legged partridge (Alectoris rufa): more evidence for refugia within the Iberian glacial refugium

The Pleistocene climatic oscillations promoted the diversification in avian species during the last glacial period. The red‐legged partridge (Alectoris rufa, Family Phasianidae) has a large natural distribution extending from the Mediterranean to humid temperate zones. However, the genetic structure for this species is unknown. The present study investigates the phylogeography, genetic structure and demographic history of A. rufa across its distribution, employing both mitochondrial DNA control region sequences and nuclear microsatellite loci. Our results propose that this species was greatly affected by Pleistocene glaciations. The mismatch analyses suggest that the current populations resulted from post‐glacial expansion and subsequent differentiation resulting in five diagnosable genetic clusters: Southwestern, Central‐eastern, Northwestern, Balearic and French and Italian. Further, we found evidence of three glacial refugia within the currently recognized Iberian glacial refugium. The intraspecific structure revealed by both maternal and biparental phylogeographic analyses was not resolved in the phylogenetic analyses. Based on all considerations, we recommended that five management units be recognized.     

Mitochondrial DNA and microsatellite markers evidence a different pattern of hybridization in red-legged partridge (Alectoris rufa) populations from NW Italy

Genetic introgression with exotic genomes represents a major conservation concern for the red-legged partridge (Alectoris rufa, Phasianidae). In particular, massive releases of chukar partridges (Alectoris chukar) and/or red-legged × chukar partridge hybrids for hunting purposes have cast serious doubts on the Italian present-day occurrence of wild A. rufa populations not affected by introgressive hybridization. This study investigates the genetic structure of red-legged partridges populations in two ecologically different areas in Northern Italy. Analysis of maternal mitochondrial DNA and biparental microsatellite markers excluded the presence of hybridization in a typical agricultural habitat where hunting and release of reared birds are strictly banned. By contrast, signs of chukar introgression were detected in a perifluvial habitat unusual for the red-legged partridge in Italy. The present study documents the first red-legged partridge population with no genetic evidences of recent chukar introgression presently living in Italy. We recommend that urgent conservation actions are taken to preserve the genetic integrity of this population from the risk of hybridization with farm-reared birds and to support its long-term conservation.     

Novel genome reveals susceptibility of popular gamebird,the red-legged partridge (Alectoris rufa,Phasianidae), to climate change

We produced a high-quality de novo genome assembly of the red-legged partridge A. rufa, the first reference genome of its genus, by utilising novel 10× Chromium technology. The estimated genome size was 1.19 Gb with an overall genome heterozygosity of 0.0022; no runs of homozygosity were observed. In total, 21,589 protein coding genes were identified and assigned to 16,772 orthologs. Of these, 201 emerged as unique to Alectoris and were enriched for positive regulation of epithelial cell migration, viral genome integration and maturation. Using PSMC analysis, we inferred a major demographic decline commencing ~140,000 years ago, consistent with forest expansion and reduction of open habitats during the Eemian interglacial. Present-day populations exhibit the historically lowest genetic diversity. Besides implications for management and conservation, this genome also promises key insights into the physiology of these birds with a view to improving poultry husbandry practices.