Genetic structure based on nuclear and chloroplast microsatellite loci of Solanum lycocarpum A. St. Hil. (Solanaceae) in Central Brazil

Solanum lycocarpum (Solanaceae) is a woody species found in the Brazilian Cerrado. The flowers are pollinated by Xylocopa spp bees, and seeds are dispersed by mammals with distinct home range sizes. As a consequence, relative contributions of pollen and seeds to overall gene flow can vary according to different spatial scales. We studied the genetic structure of four natural populations of S. lycocarpum separated by 19 to 128 km, including individuals located along dirt roads that interlink three of the populations. A total of 294 individuals were genotyped with five nuclear and six chloroplast microsatellite markers. Significant spatial genetic structure was found in the total set of individuals; the Sp statistic was 0.0086. Population differentiation based on the six chloroplast microsatellite markers (θ(pC) = 0.042) was small and similar to that based on the five nuclear microsatellite markers (θ(p) = 0.054). For this set of populations, pollen and seed flow did not differ significantly from one another (pollen-to-seed flow ratio = 1.22). Capability for long distance seed dispersion and colonization of anthropogenic sites contributes to the ability of S. lycocarpum to maintain genetic diversity. Seed dispersion along dirt roads may be critical in preserving S. lycocarpum genetic diversity in fragmented landscapes.     

Molecular genetic diversity and differentiation of populations of ‘somnus’ passion fruit trees (Passiflora setacea DC): Implications for conservation and pre-breeding

The ‘somnus’ passion fruit tree (Passiflora setacea) is native to the ‘Cerrado’ and ‘Caatinga’ biomes in Brazil and possesses agrobiological and commercial traits of interest. Studies examining the nature of genetic variability in natural populations are important for the utilization of these traits in conservation and breeding programs. In this study, we analyzed 12 populations of P. setacea from different locations distributed in three agro-ecological zones within the Bahia state of Brazil. Eleven ISSR primers and four pairs of RGA primers were used to assay 109 and 49 unique and reproducible loci, of which 108 (99%) and 49 (100%) were polymorphic. Although the level of genetic diversity in ‘somnus’ passion fruit trees was greater than that observed for other species of the same genus, preferential collection of certain populations, such as those located in the cities of Vitória da Conquista and Licinio de Almeida, is important when considering the fact that ‘somnus’ passion fruit trees occur in areas that are highly disturbed. This disturbance is primarily due to the deployment of pasture, predatory extraction and accelerated urban expansion. An analysis of molecular variance revealed a balance between the estimated genetic variation within and among populations. These data may be useful for developing strategies for preservation of this species in the Cerrado.     

Extending glacial refugia for a European tree: genetic markers show that Iberian populations of white elm are native relicts and not introductions

Conservation policies usually focus on in situ protection of native populations, a priority that requires accurate assessment of population status. Distinction between native and introduced status can be particularly difficult (and at the same time, is most important) for species whose natural habitat has become both rare and highly fragmented. Here, we address the status of the white elm (Ulmus laevis Pallas), a European riparian tree species whose populations have been fragmented by human activity and is protected wherever it is considered native. Small populations of this species are located in Iberia, where they are unprotected because they are considered introductions due to their rarity. However, Iberia and neighbouring regions in southwestern France have been shown to support discrete glacial refuge populations of many European trees, and the possibility remains that Iberian white elms are native relicts. We used chloroplast RFLPs and nuclear microsatellites to establish the relationship between populations in Iberia and the Central European core distribution. Bayesian approaches revealed significant spatial structure across populations. Those in Iberia and southwestern France shared alleles absent from Central Europe, and showed spatial population structure within Iberia common in recognized native taxa. Iberian populations show a demographic signature of ancient population bottlenecks, while those in Central European show a signature of recent population bottlenecks. These patterns are not consistent with historical introduction of white elm to Iberia, and instead strongly support native status, arguing for immediate implementation of conservation measures for white elm populations in Spain and contiguous areas of southern France.     

Genetic Diversity in Five Iranian Native Chicken Populations Estimated by Microsatellite Markers

Iranian chicken genetic resources are characterized by a long history and a vast diversity. This study represents the first results from the selection and evaluation of five polymorphic microsatellite markers for the genetic assessment of five native chicken populations located in the northwestern (West Azerbaijan), northern (Mazandaran), central (Isfahan, Yazd), and southern (Fars) provinces of Iran. The number of alleles ranged from three to six per microsatellite locus. All populations were characterized by a high degree of genetic diversity, with the lowest heterozygosity found in the Isfahan population (62%) and the greatest in the populations from West Azerbaijan and Mazandaran (79%). The largest Nei’s unbiased genetic distance was found between the Isfahan and Fars populations (0.696) and the smallest between the Mazandaran and Yazd populations (0.097). The Isfahan population was found to be the most genetically distant among all populations studied. These results serve as an initial step in the plan for genetic characterization and conservation of Iranian native chickens.     

Spatial analysis of anthropogenic disturbance regimes and roadside shrubs in a fragmented agricultural landscape

Abstract. In fragmented woodlands in agricultural regions of Australia, roadside environments (road verges) provide important refuges for threatened native fauna and isolated populations of plant species. However, as roads are transport corridors for humans and their vehicles, species survival is affected through destruction, fragmentation and modification of remaining habitat by human activity. Few studies have recognised the effects of anthropogenic disturbances, in the form of historical roadworks activities, on adjacent roadside plant populations. The aim of this study was to investigate the effects of soil disturbance from roadworks on the spatial patterns and structural dynamics of roadside Acacia populations in an agricultural area in southeastern Australia. Stem size and disturbance data were collected from 135 roadside populations of three species of Acacia shrubs in the Lockhart Shire area. Spatial pattern analysis using the Network K‐function and Discriminant Function analyses showed that road verge width, road category, disturbance intensity and distance to nearest town were highly significant variables in relation to disturbance from roadworks and shrub structural dynamics. Colonising populations were more abundant along gravel roads where soil disturbance intensity was high, whereas stable populations were more abundant where soil disturbance intensity was low. Senescent populations were more abundant in narrow, little used road verge corridors 4–6 km from nearby towns. These results suggest that anthropogenic disturbance regimes may be critical to shrub recruitment and persistence in roadside environments, which has important consequences for conservation of threatened native flora and fauna in agricultural landscapes.     

Genetic variation in remnant populations of Dalbergia nigra (Papilionoideae), an endangered tree from the Brazilian Atlantic Forest

BACKGROUND AND AIMS: Dalbergia nigra, known as Brazilian rosewood, is an endangered tree species restricted to the Brazilian Atlantic Forest and has been intensively logged for five centuries due to its high-quality wood. The objective of the present study was to assess the genetic variation and structure in adults and saplings of the species from a large reserve of the Atlantic Forest, the Rio Doce State Park, and from two small surrounding fragments, one better preserved and another with a high degree of anthropogenic disturbance. METHODS: Analyses of genetic variation and structure were conducted by studying allozyme markers. Seven putative enzymatic loci were resolved, five of them being polymorphic. KEY RESULTS: The mean numbers of alleles per locus (A) were 1.93 and 1.73, while the percentages of polymorphic loci (P) were 93 and 73 % for adults and saplings, respectively. Saplings from the fragment with high anthropogenic disturbance exhibited the lowest values of A and P. The fragment that constitutes a conservation area exhibited genetic variation similar to the population from the large reserve. The observed (H(o)) and expected (H(e)) heterozygosities were not significantly different among the three populations. Only sapling populations showed F(ST) values (divergence among populations) significantly different from zero over all studied loci. The fragment with high anthropogenic disturbance exhibited considerable genetic divergence in relation to the above-cited populations. CONCLUSIONS: The evaluated populations displayed mean levels of genetic variation intermediate to those expected for narrow and widespread species. The results suggest that fragments with similar area and geographical distance from a large protected reserve can exhibit different levels of genetic variation, depending on the degree of anthropogenic disturbance. The considerable genetic variation in the protected fragment points to the importance of adequate conservation of small fragments for the preservation of genetic variation in D. nigra.     

Are conservation units in the Caatinga biome,Brazil, efficient in the protection of biodiversity? An analysis based on the drosophilid fauna

Biodiversity is believed to be low in regions with vegetation that has adapted to water stress. Additionally, there is little interest by authorities in establishing and expanding conservation units in these areas. In Brazil, the Caatinga and the Cerrado biomes comprise this xerophilous vegetation. In both, climate is tropical and the dry season is long and well-defined. The Caatinga is the Brazilian biome with the smallest area protected by conservation units. This study evaluates the efficacy of conservation units in the Caatinga biome based on abundance and richness of drosophilids. Flies were collected inside and outside these areas. In total, approximately 23,000 flies of 32 species were collected in six conservation and six non-conservation sites. Two non-described species occurred exclusively inside protected areas, underlining the importance of conservation efforts in the maintenance of biodiversity. Other species were recorded exclusively outside conservation areas, which emphasizes the importance of establishing and expanding conservation units in the Caatinga. Native species were significantly more abundant inside conservation units, though the richness was similar in protected and non-protected areas. Abundance of exotic species outside conservation areas was statistically different in comparison with that of native ones.     

Cavity-nesting bee communities in areas with different levels of vegetation disturbance

ABSTRACT

The reasons for the decline of bee diversity and abundance include the destruction and loss of natural habitats. Protected areas are created for biodiversity conservation, but these areas vary strongly in their level of vegetation disturbance. Using trap-nests, we assessed changes in solitary bee abundance, richness, and composition in areas ranging from naturally conserved to degraded. Solitary bees were sampled during an 18-month period in three areas of southeastern Brazil: a preserved area in Rio Preto State Park – PERP; a restored/altered area with exotic plants at the Federal University of the Jequitinhonha and Mucuri Valleys – JK Campus; and a degraded area in Biribiri State Park – PEBi. A total of seven species of bees built 115 nests. In the degraded area, only two nests were built. Abundance of built nests was higher in the preserved area (PERP), but diversity was higher in the restored area (JK Campus). Our results show that the solitary bee population responds positively to habitat complexity (local scale). The presence of a diverse solitary bee fauna in the restored area indicates that altered areas should also be protected as suitable areas for re-colonization of cavity-nesting bees.     

Patterns of genetic diversity in southern and southeastern Araucaria angustifolia (Bert.) O. Kuntze relict populations

Habitat fragmentation and a decrease in population size may lead to a loss in population genetic diversity. For the first time, the reduction in genetic diversity in the northernmost limit of natural occurence (southeastern Brazil) of Araucaria angustifolia in comparison with populations in the main area of the species continuous natural distribution (southern Brazil), was tested. The 673 AFLPs markers revealed a high level of genetic diversity for the species (Ht = 0.27), despite anthropogenic influence throughout the last century, and a decrease of H in isolated populations of southeastern Brazil (H = 0.16), thereby indicating the tendency for higher genetic diversity in remnant populations of continuous forests in southern Brazil, when compared to natural isolated populations in the southeastern region. A strong differentiation among southern and southeastern populations was detected (AMOVA variance ranged from 10%-15%). From Bayesian analysis, it is suggested that the nine populations tested form five "genetic clusters" (K = 5). Five of these populations, located in the northernmost limit of distribution of the species, represent three "genetic clusters". These results are in agreement with the pattern of geographic distribution of the studied populations.     

Natural selection drives parallel divergence in the mountain plant Heliosperma pusillum s.l

The evolution of species or ecotypes can occur gradually through neutral and adaptive genetic changes. To explore the influence of natural selection during early phases of divergence, morphological and ecological discontinuity and its adaptive significance were investigated in six pairs of alpine and independently evolved montane populations of Heliosperma pusillum s.l.; the latter are usually taxonomically recognised at the species rank in spite of their highly debatable taxonomic value. We tested whether environmental conditions – characterised by Landolt indicator values from vegetation surveys and temperature measurements – and morphology of alpine and montane populations differ discretely and in parallel across six population pairs. By reciprocal transplantation experiments in natural environments in two population pairs and in climate chambers for five population pairs we compared fitness of native versus non‐native individuals. Alpine and montane populations differed in environmental conditions and morphology within each pair. Morphological differentiation occurred in parallel and correlated with environmental, but not with genetic distances. In both environments, native individuals had higher establishment success and plant size. Differentiation of the independently evolved montane populations is driven by natural selection and parallel, independent adaptation in response to drought, lower irradiance and higher, less fluctuating temperatures in montane populations. Our study system exemplifies rapid, parallel evolution leading to morphologically and ecologically strongly divergent, though fully interfertile, ecotypes.     

Promotion of exotic weed establishment by endangered giant kangaroo rats (Dipodomys ingens) in a California grassland

Giant kangaroo rats (Dipodomys ingens) continually modify their burrow precincts by digging tunnels, clipping plants, and other activities. In the valley grasslands of the Carrizo Plain Natural Area (San Luis Obispo County, California), this chronic disturbance to soil and vegetation promoted the establishment of exotic ruderal and early successional plant species. Erodium cicutarium, Bromus madritensis ssp. rubens, and other Mediterranean annuals were found to constitute a very large proportion of the vegetation on giant kangaroo rat precincts. When vegetation on precincts was compared with the vegetation in less disturbed intermediate areas located between precincts, species richness, cover and frequency of exotic plants were significantly greater on precincts. The reverse was found for native species. In addition, exotic species encountered in this study had significantly larger seeds than did native species, suggesting that these granivorous kangaroo rats preferentially cache large weed seeds on their precincts. Since the kangaroo rats depend on exotic plants for food and the exotic plants depend upon the kangaroo rats to disturb their habitat continually, the weed-kangaroo rat relationship is mutualistic. This strong relationship may also inhibit population growth of native grassland plants which occupy disturbed habitats but have difficulty competing with exotic weeds for resources. From a conservation perspective, this mutualism presents an intractable management dilemma. Restoration of valley grasslands where endangered giant kangaroo rats occur, to conditions where native species dominate, may be impossible.     

Countryside vegetation provides supplementary habitat at the landscape scale for woodland birds in farm mosaics

Agricultural environments have a critical role in the global conservation of biodiversity, but the persistence of forest and woodland-dependent species in these systems is often limited by insufficient habitat. Modified or semi-natural ‘countryside’ (matrix) vegetation is used by many species, but its value at the landscape scale is rarely tested. Do such habitats simply provide additional resources for populations sustained by remnant native vegetation in the landscape, or can they enhance populations over and above that sustained by natural vegetation cover? We surveyed woodland-dependent birds in all types of landscape element in 27 farmland mosaics (100 ha each) in south-eastern Australia. Four measures of wooded vegetation cover were quantified: native vegetation only; and combinations of native vegetation plus scattered trees and/or tree plantations. We used an information-theoretic approach to compare the responses of 30 species to each measure of vegetation cover. Woodland birds were well represented in agricultural mosaics (65% of the regional species-pool); however, almost half were recorded only in mosaics with >20% native vegetation cover. The incidence of 23 species was positively related to measures of wooded cover, indicating increased occurrence in mosaics with a greater cover of wooded vegetation. For 12 species, scattered trees and plantations provided supplementary habitat that enhanced their population status at the landscape scale, beyond that sustained by native vegetation cover. While native vegetation has a critical role for conservation in agricultural environments, careful management of wooded countryside elements (such as scattered trees, tree plantations) offers additional benefits to the woodland-dependent avifauna.     

Floristic relationships of the woody component in rocky outcrops savanna areas in Central Brazil

Rocky outcrops usually have a peculiar vegetation which differs from that of the surrounding vegetation matrix. In Brazil, a savanna type (cerrado rupestre) is particularly characterized by rocky outcrops and is one of eleven vegetation types which occur throughout Cerrado biome. It has been scarcely studied in detail. Therefore, the aim of this study was to investigate the phytogeographical patterns of the woody species in ten areas of the rocky outcrop savanna in the Brazilian Central Plateau. The difference in spatial distribution of the species was assessed through indicator species and CCA ordination analyses. Ten indicator species showed significantly different distribution. The first axis of the ordination showed association with the edaphic gradient, based on maximum temperature, pH and physical properties of the soils (eigenvalue 0.63). The second axis showed an eigenvalue 0.46, associated with poor rainfall and land declivity. It appears that the woody flora of the rocky outcrop savanna areas of the Brazilian Central Plateau is relatively homogeneous, with low β diversity. Apparently, the size of the woody species populations is what distinguishes the ten investigated areas. Therefore, initiatives and actions for the Cerrado biome conservation must consider not only the size of the protected areas but also that of the populations to be protected, especially the woody species on rocky outcrops.     

Isolation and characterization of 14 polymorphic microsatellite loci in the ringneck snake <Emphasis Type="Italic">Diadophis punctatus</Emphasis> (Colubridae: Dipsadinae)

We constructed a genomic library and developed 14 polymorphic loci to assess species boundaries between previously described mtDNA lineages and to examine the genetic variability between populations of the ringneck snake Diadophis punctatus species complex. Polymorphism was investigated for these markers in 34 individuals from populations in southeastern Louisiana and southern Florida. The number of alleles ranged from 5 to 29, expected heterozygosity ranged from 0.816 to 0.962 and observed heterozygosity ranged from 0.452 to 0.889. These new loci provide the tools necessary to examine species boundaries, population genetics within species and to determine the conservation status of imperiled populations.     

Revegetation following Soil Disturbance and Invasion in a Californian Meadow: a 10-year History of Recovery

Disturbance is necessary for the regeneration of many native plant species, but can also facilitate biological invasions. As a result, disturbance can play complex roles in vulnerable habitats such as remnant Californian perennial grasslands. To investigate these conflicts, plots in a northern Californian coastal grassland were experimentally disturbed in the winter of 1990–1991; these plots differed in the area and intensity (depth) of the soil disturbance applied. When these plots were revisited after 10 growing seasons, patterns of revegetation differed significantly from those observed early in recolonization (0–3 years). At the earlier samplings, exotic annual grasses rapidly increased in most disturbance types. After 10 years, these exotic annuals had retreated from the depth experiment, which had recovered to a vegetation dominated by native perennials in all but the most severely disturbed plots. In contrast, although differences between control and disturbed plots also disappeared in the area experiment, the average abundance of aliens did not decline substantially relative to 1993 levels, especially in larger disturbances. Nonetheless, populations of aliens remained small compared to the peak populations in the depth experiment, probably reflecting wetter soils at the site used for the area experiment. These results differ from those of other recent studies of soil disturbance in coastal Californian ecosystems, which indicate disturbance may result in the permanent replacement of native perennial vegetation by dense populations of exotic annual grasses. This difference may reflect the high resilience of northern coastal grasslands as well as the scale of disturbances considered by different studies.     

Roads Alter the Colonization Dynamics of a Keystone Herbivore in Neotropical Savannas1

Roads can facilitate the establishment and spread of both native and exotic species. Nevertheless, the precise mechanisms facilitating this expansion are rarely known. We tested the hypothesis that dirt roads are favorable landing and nest initiation sites for founding‐queens of the leaf‐cutter ant Atta laevigata. For 2 yr, we compared the number of attempts to found new nests (colonization attempts) in dirt roads and the adjacent vegetation in a reserve of cerrado (tree‐dominated savanna) in southeastern Brazil. The number of colonization attempts in roads was 5 to 10 times greater than in the adjacent vegetation. Experimental transplants indicate that founding‐queens are more likely to establish a nest on bare soil than on soil covered with leaf‐litter, but the amount of litter covering the ground did not fully explain the preference of queens for dirt roads. Queens that landed on roads were at higher risk of predation by beetles and ants than those that landed in the adjacent vegetation. Nevertheless, greater predation in roads was not sufficient to offset the greater number of colonization attempts in this habitat. As a consequence, significantly more new colonies were established in roads than in the adjacent vegetation. Our results suggest that disturbance caused by the opening of roads could result in an increased Atta abundance in protected areas of the Brazilian Cerrado.     

Small mammals in high altitude phytophysiognomies in southeastern Brazil: are heterogeneous habitats more diverse?

The Chapada das Perdizes is considered a region of high biodiversity, but there are few studies that describe the small mammals in the region, mainly in higher portions of the area. The primary objective of this study was to estimate the richness and abundance of terrestrial small mammals within three different vegetation types in the high altitude region of southern Minas Gerais and to evaluate the relationship between the community composition of terrestrial small mammals and the heterogeneity of phytophysiognomies. Pitfall and cage trap grids were arranged in natural field, semi-deciduous and cloud forests. A total of 26 species was recorded. The compositions of the three phytophysiognomies were significantly different. The expansive study area is located in a region of tension between the Cerrado and Atlantic Forests and should be preserved due to high diversity and ecological importance.     

Relationship between land uses and diversity of dung beetles (Coleoptera: Scarabaeinae) in the southern Atlantic forest of Argentina: which are the key factors?

The loss of natural habitats is one of the main drivers of biodiversity decline. Anthropogenic land uses preserving biotic and abiotic conditions of the native ecosystem are more suitable to preserve the native biodiversity. In this study, we explored changes in species richness and composition in different land uses of the southern Atlantic forest, considering three independent factors: (1) canopy (presence–absence), (2) type of vegetation (native–exotic) and (3) livestock (presence–absence). We expected a gradient of response in the richness and composition of the native forest dung beetle community, from land uses preserving canopy and native vegetation to open land uses with exotic vegetation. Dung beetles were sampled in protected native forests and four land uses, using two potential food resources: human dung and carrion. The species richness and composition of each habitat, as well as differences in composition and the influence of factors over diversity, were then analyzed. As expected, our results showed that land uses preserving canopy and native vegetation maintain the dung beetle diversity of the native forest. Moreover, while the three factors analyzed influenced dung beetle diversity, canopy cover was the main driver of dung beetle diversity loss. The main conclusion of this study is that the conservation of canopy (either native or exotic) is determinant to preserve highly diverse dung beetle communities and subsequently, the ecological functions performed by this taxon. However, the ecophysiological mechanism behind the response of dung beetles to habitat disturbance is poorly understood.     

Genetic diversity of four populations of Qualea grandiflora Mart. in fragments of the Brazilian Cerrado

We analyzed the genetic structure and diversity of Qualea grandiflora Mart., the most abundant woody species in the Brazilian Cerrado. Eight microsatellite loci were used to analyze samples from four populations subjected to different types of anthropic pressure, distributed throughout the state of São Paulo in the regions of Assis, Brotas, Itirapina and Pedregulho. Results indicated a mean number of 12 alleles per locus, but only six effective alleles. Alleles private to particular populations and rare alleles were also detected. An excess of homozygotes and moderate levels of inbreeding were observed. No clones were identified. All populations departed from Hardy–Weinberg equilibrium (p < 0.05). Spatial structure was observed in the distribution of specimens in distance classes ranging from 30 to 40 km and three genetic clusters were identified, with genotypes in the Pedregulho population differing from the others by up to 90 %. The influence of the Wahlund effect on the studied populations lies between 8.5 and 53.3 %. Estimates of effective population size were low (<10), and the minimum viable area for conservation in the short-, medium- and long-term was estimated to be between 4 and 184 ha. Gene flow was high enough to counter the effects of genetic drift. The genetic diversity and divergence between the studied populations indicated that the Pedregulho population should be considered an Evolutionary Significant Unit and a Management Unit.     

Population consequences of changes in an ant-seed mutualism in Sanguinaria canadensis

Summary Seed dispersal by ants was studied in three populations of the myrmecochore, Sanguinaria canadensis, located in three habitats, each of which showed a different level of disturbance. Frequency of seed removal and the distances seeds were carried by ants were related to plant density, dispersion and the relative proportions of sexual and asexual reproduction in each population. Seeds in the least disturbed habitat were removed frequently and carried, by a wide variety of ants, distances of up to 12 m. Plant density was low and clone size was small. There was a relatively low level of sexual (seed) reproduction but seeds were generally transported well beyond the boundaries of the parent clones. By contrast, at the most disturbed site, plant density was high and clone size was very large. While there was a high level of seed production, seeds were rarely moved by ants and since removal distances were short, the probability of a seed being relocated beyond the limits of the parent clone was miniscule. The third population from a habitat which was intermediate in disturbance yielded data intermediate to the others. The data show that habitat disturbance, in disrupting the ant fauna and hence the ant-seed mutualism, has profound effects upon population density, dispersion and patterns of reproduction. Density-dependent regulation of sexual output predicted, for example, by the Strawberry-Coral model (Williams 1975), is maladaptive when the antseed mutualism is disturbed. We discuss the implications of this for theoretical modeling, the significance of mutualisms and the assessment of disturbance for conservation.