Macroinvertebrate succession during leaf litter breakdown in a perennial karstic river in Western Brazil

Leaf litter is a major basal resource to stream ecosystems, but few studies addressed their role in karst systems, mainly in intermittent springs and lakes. Patterns of resource use in perennial rivers are poorly known, although the input of leaf litter strongly influences macroinvertebrate assemblage structure. In this study, we evaluated the structure of macroinvertebrate assemblages along the decomposition of leaf litter in a tropical karst river, using leaf litter cages made of coarse nylon mesh (25 mm) to allow colonization by macroinvertebrates. The experiment was followed weekly for 10 weeks. The assemblages were dominated by snails (90.5% of total fauna), hyalellid amphipods, and larval chironomid midges, with highest abundances in the intermediate stages of the experiment, resulting in a gradient in assemblage structure. The large abundance of snails, which are common in other karst systems, suggest that this group may have an important role in decomposer food webs, facilitating or directly contributing to leaf breakdown. Electronic supplementary material Electronic supplementary material is available for this article at and accessible for authorised users.     

Local and regional factors determining aquatic and semi-aquatic bug (Heteroptera) assemblages in rivers and streams of Greece

Heteroptera species were collected from 48 sites distributed throughout the mainland and island complexes of Greece during 1999–2004. The aims of this study were to investigate Heteroptera distribution and abundance in Greek streams, identify the environmental factors that are linked to variation in their assemblages and to partition the influence of environmental and spatial components, alone and in combination, on Heteroptera community composition. Canonical ordination techniques (CCA) were used to determine the relationship between environmental variables and species abundance, while variation partitioning was performed using partial CCA to understand the importance of different explanatory variables in Heteroptera variation. Heteroptera variation was decomposed into independent and joint effects of local (physicochemical variables, microhabitat composition, stream width and depth), regional (land use/cover) and geographic variables (longitude, latitude, altitude and distance to source). Land use/cover, aquatic and riparian vegetation, stream size and water chemistry were the most important factors structuring Heteroptera assemblages. At regional scale, bug assemblages were mainly divided into those found in forested and agricultural landscapes, following water quality and microhabitat composition at local scale. Local variables accounted for 48% of the total explained variation, regional variables for 20% whereas geographical position appeared to be the least influencing factor (8.5%). The results of partial constraint analyses suggested that local variables play a major role in Heteroptera variation followed by regional variables. Electronic supplementary material Electronic supplementary material is available for this article at and accessible for authorised users.     

Testing the enemy release hypothesis: trematode parasites in the non-indigenous Manila clam <Emphasis Type="Italic">Ruditapes philippinarum</Emphasis>

Knowledge of temporal variation in nearshore Laurentian Great Lakes fish assemblages is important for understanding species–habitat associations, how abiotic and biotic influences vary temporally, and when sampling should occur. Using spring and fall seining data from Lake Erie beaches, we compared day and night fish assemblages and tested for differences among sampling periods. Beaches were utilized by a diverse collection of Lake Erie basin fishes (one-third of known species). During all sampling periods, catches were dominated by cyprinid species (53–91%), and by invertivores and planktivorous fishes. Diel differences were detected in abundance, species richness and assemblage structure. Multivariate analyses (canonical analysis of principal coordinates) indicated that season had a larger influence on fish assemblage structure than diel period. Given observed temporal variation in assemblage structure, studies of Laurentian Great Lakes beach fishes should be restricted to a single time period (e.g. day-time spring sampling), or adopt sampling designs that permit diel period and season to be included as factors in analyses. Second, the large seasonal variation in assemblage composition combined with higher night species richness indicates that night sampling during both spring and fall would be the most efficient and comprehensive approach for beach fish inventory. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users. Handling editor: J. Trexler     

Macrozoobenthic Assemblages of the Evros Delta (North Aegean Sea)

The composition of the macrozoobenthic assemblages of the Evros Delta (North Aegean Sea) has been investigated by means of 4 replicate quantitative samples, collected at 35 sites. The information obtained from the numerical analysis of the faunal samples and the analysis of other data (values of the main physico-chemical parameters) revealed the presence of a single community. The faunal composition of this community varies locally according mainly to the salinity and secondly to the particle size of the substrate. The community is described on the basis of its biological parameters and compared with corresponding assemblages from other areas.     

Effects of thermal regime on mayfly assemblages in mountain streams

The variation in thermal regime and elevation among streams in the Sawtooth Mountains of Idaho, USA was used to test hypotheses about forces structuring larval mayfly assemblages. Sites above and below lakes were included to maximize variation in thermal regime. Forty-five sites were sampled for mayfly larvae and their summer thermal regime was measured. Ordination methods were used to analyze variation in the mayfly assemblages. Principal components analysis showed that mayfly assemblages were strongly and consistently affected by lakes within the stream system, apparently through the effects of lakes on stream temperature. Redundancy analysis explained 51% of the variation in assemblages and identified maximum water temperature and elevation as strong predictors of mayfly assemblages. Elevation influenced assemblage structure independently of summer maximum water temperature, suggesting that air temperature or some other elevation-dependent feature is also important. As predicted by the River Continuum Concept, mayfly diversity increased with increasing maximum daily range in temperature. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users. Handling editor: R. Bailey     

Development of diatom-based tools for assessing stream water quality in south-eastern Australia: assessment of environmental transfer functions

Models were developed of relationships among water quality, geospatial and species-level diatom data for 465 samples collected from stream sites across south-eastern Australia. Transfer functions were derived from weighted averaging and artificial neural network approaches. Analysis of spatial variations in species assemblages was used to divide the sites into two groups according to site elevation. The strongest predictive models for the upland group associated diatom assemblages with conductivity, longitude, altitude, and to a lesser extent pH, NO _x and TKN. The strongest predictors for the lowland group were longitude and conductivity, but artificial neural network models performed well for NO _x and temperature. The importance of the geospatial variables suggests that there may be a capacity to develop diatom sub-regions within which robust models for other water quality variables important to management can be generated. Electronic supplementary material Electronic supplementary material is available for this article at and accessible for authorised users. Handling editor: R. Norriss     

Photoacoustics: a novel tool for the determination of photosynthetic energy storage efficiency in phytoplankton

Photosynthetic energy storage efficiency controls the development and decline of phytoplankton biomass. All abiotic environmental factors such as light intensity; temperature, nutrient availability and pollutants will exert detectable changes in the photosynthetic energy storage efficiency of phytoplankton, and subsequently affect total biomass and composition of phytoplankton assemblages. Since this efficiency is a sensitive amplifier of ambient conditions, it thereby is an excellent reporter of water quality parameter. We demonstrate the applicability of the novel photoacoustic method in easily and directly estimating the energy storage efficiency of phytoplankton in a drinking water reservoir of different nutrient status. Electronic Supplementary Material Supplementary material is available in the online version of this article at and accessible for authorised users Handling editor: J. Padisak     

Changing ecology of Lake Victoria cichlids and their environment: evidence from C<Superscript>13</Superscript> and N<Superscript>15</Superscript> analyses

Springs are spatially restricted and insular ecotones. In the Alps, topography enhances this isolation. Springs are to a certain extent inhabited by organisms which are adapted to the relatively constant environmental conditions in springs. We examined thirty-six springs in eight different areas in the Swiss National Park (SNP) to understand if the macroinvertebrate assemblages of high-elevation springs are isolated or interconnected communities. We quantitatively and qualitatively sampled the macroinvertebrate assemblages of the springs and monitored environmental parameters. The similarity of the macroinvertebrate assemblages of the springs within and the dissimilarities between the different areas were relatively high; a clear spatial isolation was not evident. The differences of macroinvertebrate assemblages in different areas were explained by substrate parameters: springs in areas at lower altitudes were characterized by organic substrates and many water mite species. High-elevation springs were characterized by coarse inorganic substrates and Trichoptera of the genus Drusus. For spring conservation, it is important to decide on an individual basis if the loss of a single spring will have severe consequences for spring biodiversity.     

Macroinvertebrate drift density in relation to abiotic factors in the Missouri River

Changes in flow management to restore ecosystem health have been proposed as part of many restoration projects for regulated rivers. However, uncertainty exists about how the biota will respond to flow management changes. The objectives of this study were to estimate the relative importance of key abiotic predictor variables to aquatic macroinvertebrate drift densities in the Missouri River and to compare these results among reaches of the river. A multi-year, multi-location database of spring macroinvertebrate drift net sampling was used to develop relations between drift density and variables representing discharge, temperature, and turbidity in the Missouri River from Fort Randall Dam, South Dakota to the mouth of the Little Nemaha River, Nebraska. Multimodel inference using generalized linear mixed models and an information theoretic approach were used to estimate the relative importance of the predictor variables and the parameters. The results varied by reach. Discharge-related factors were more important at the upstream end of the study area, and turbidity was more important at the downstream end of the study area. Water temperature or degree days were also important predictors in the upstream reaches. The results below Gavins Point Dam suggest that increased macroinvertebrate drift densities are a response to reduced habitat and food availability. The results identify important variables for drift density that could be used in future experimental studies of flow manipulation for the Missouri or other large, regulated rivers. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users. Handling editor: L. Mauricio Bini     

Spatial and temporal distributions of epiphytic diatoms growing on Thalassia testudinum Banks ex König: relationships to water quality

The spatial and temporal distributions of the epiphytic diatom flora on Thalassia testudinum was described within the Florida Bay estuary and at one Atlantic site east of the Florida Keys over a 1-year period. Species of the genus Mastogloia dominated the epiphytic diatom flora (82 out of 332 total species). Nonmetric Multidimensional Scaling (NMDS) and Analysis of Similarity (ANOSIM) revealed four distinct spatial assemblages and two temporal assemblages. Eastern and western Florida Bay assemblages were identified within the estuary. The eastern diatom assemblage was characterized by high relative abundances of Brachysira aponina and Nitzschia liebetruthii, while the western assemblage was characterized by the abundance of Reimerothrix floridensis, particularly during summer. Two diverse and distinct marine assemblages, one located in the Gulf of Mexico along the western edge of Florida Bay and the other behind the Florida reef tract in the Atlantic Ocean, were also identified. Analysis of the spatial distribution of diatoms and water quality characteristics within Florida Bay suggest that these assemblages may be structured by salinity and nutrient availability, particularly P. The Gulf of Mexico and the western Florida Bay assemblages were associated with higher water column salinities and TP concentrations and lower DIN concentrations and TN:TP ratios relative to the eastern Florida Bay assemblage. The temporal variation in diatom assemblages was associated with water temperature, though temporal indicator species were few relative to the number of spatial indicators. Electronic supplementary material Electronic supplementary material is available for this article at and accessible for authorised users.     

Distribution and abundance of zooplankton populations in Crater Lake,Oregon

The zooplankton assemblages in Crater Lake exhibited consistency in species richness and general taxonomic composition, but varied in density and biomass during the period between 1988 and 2000. Collectively, the assemblages included 2 cladoceran taxa and 10 rotifer taxa (excluding rare taxa). Vertical habitat partitioning of the water column to a depth of 200 m was observed for most species with similar food habits and/or feeding mechanisms. No congeneric replacement was observed. The dominant species in the assemblages were variable, switching primarily between periods of dominance of Polyarthra-Keratella cochlearis and Daphnia. The unexpected occurrence and dominance of Asplanchna in 1991 and 1992 resulted in a major change in this typical temporal shift between Polyarthra-K. cochlearis and Daphnia. Following a collapse of the zooplankton biomass in 1993 that was probably caused by predation from Asplanchna, Kellicottia dominated the zooplankton assemblage biomass between 1994 and 1997. The decline in biomass of Kellicottia by 1998 coincided with a dramatic increase in Daphnia biomass. When Daphnia biomass declined by 2000, Keratella biomass increased again. Thus, by 1998 the assemblage returned to the typical shift between Keratella-Polyarthra and Daphnia. Although these observations provided considerable insight about the interannual variability of the zooplankton assemblages in Crater Lake, little was discovered about mechanisms behind the variability. When abundant, kokanee salmon may have played an important role in the disappearance of Daphnia in 1990 and 2000 either through predation, inducing diapause, or both. Electronic supplementary material Electronic supplementary material is available for this article at and accessible for authorised users.     

Grasshopper (Orthoptera: Acrididae) communities respond to fire,bison grazing and weather in North American tallgrass prairie: a long-term study

Because both intrinsic and extrinsic factors influence insect population dynamics, operating at a range of temporal and spatial scales, it is difficult to assess their contributions. Long-term studies are ideal for assessing the relative contributions of multiple factors to abundance and community dynamics. Using data spanning 25 years, we investigate the contributions of weather at annual and decadal scales, fire return interval, and grazing by bison to understand the dynamics of abundance and community composition in grasshopper assemblages from North American continental grassland. Each of these three primary drivers of grassland ecosystem dynamics affects grasshopper population and community dynamics. Negative feedbacks in abundances, as expected for regulated populations, were observed for all feeding guilds of grasshoppers. Abundance of grasshoppers did not vary in response to frequency of prescribed burns at the site. Among watersheds that varied with respect to controlled spring burns and grazing by bison, species composition of grasshopper assemblages responded significantly to both after 25 years. However, after more than 20 years of fire and grazing treatments, the number of years since the last fire was more important than the managed long-term fire frequency per se. Yearly shifts in species composition (1983–2005), examined using non-metric multidimensional scaling and fourth-corner analysis, were best explained by local weather events occurring early in grasshopper life cycles. Large-scale patterns were represented by the Palmer Drought Severity Index and the North Atlantic Oscillation (NAO). The NAO was significantly correlated with annual mean frequencies of grasshoppers, especially for forb- and mixed-feeding species. Primary grassland drivers—fire, grazing and weather—contributing both intrinsic and extrinsic influences modulate long-term fluctuations in grasshopper abundances and community taxonomic composition. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Freshwater ostracod assemblages and their relationship to environmental variables in waters from northeast Germany

An ecological calibration dataset for freshwater ostracods from 33 localities throughout West-Pomerania (Mecklenburg-Vorpommern, Germany) was evaluated using multivariate statistical methods. A total of 47 freshwater ostracod species were identified. Nine species were rediscovered after 100 years since the last published record and Candonopsis scourfieldi and Pseudocandona sucki was recorded for the first time in the study area. Special emphasis is put on the phenology of each species to gain information on the water characteristics at the time of their last moult. Canonical correspondence analysis (CCA) revealed that the ecological variables such as water temperature, Ca, Mg, and lake area were statistically most significant (p < 0.005; n = 72) in explaining variation in the distribution of ostracod assemblages. In addition, a transfer function was developed for paleolimnological approaches, based on a weighted-averaging (WA) model to calculate water temperature from the relative abundances of 22 selected ostracod species. This model was successfully applied to infer lake water temperature from subfossil ostracod assemblages collected from lacustrine deposits in northeast Germany (Lake Krakower See). Electronic supplementary material Electronic supplementary material is available for this article at and accessible for authorised users.     

Differential gene expression of rice two-component signaling elements during reproductive development and regulation by abiotic stress

The two-component signaling elements have been implicated in diverse cellular processes in plants. Earlier, we reported the identification, characterization and expression analysis of type-A response regulators in rice. In this study, we have comprehensively analyzed the expression profile of all the two-component signaling elements identified in rice at various stages of vegetative and reproductive development by employing microarray analysis. Most of the components are expressed in all the developmental stages analyzed. A few of these were found to be specifically expressed during certain stages of seed development, suggesting their role in embryo and endosperm development. In addition, some of these components express differentially under various abiotic stress conditions, indicating their involvement at various levels of hierarchy in abiotic stress signaling. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Linking limitation to species composition: importance of inter- and intra-specific variation in grazing resistance

Short-term responses of producers highlight that key nutrients (e.g., N, P)—or combinations of these nutrients—limit primary production in aquatic and terrestrial ecosystems. These discoveries continue to provide highly valuable insights, but it remains important to ask whether nutrients always predominantly limit producers despite wide variation in nutrient supply and herbivory among systems. After all, predictions from simple food chain models (derived here) readily predict that limitation by grazers can exceed that by nutrients, given sufficient enrichment. However, shifts in composition of producers and/or increasing dominance of invulnerable stages of a producer can, in theory, reduce grazer limitation and retain primacy of nutrient limitation along nutrient supply gradients. We observed both mechanisms (inter- and intra-species variation in vulnerability to herbivory) working in a two-part mesocosm experiment. We incubated diverse benthic algal assemblages for several months either in the presence or absence of benthic macro-grazers in mesocosms that spread a broad range of nutrient supply. We then conducted short-term assays of nutrient and grazer limitation on these communities. In the “historically grazed” assemblages, we found shifts from more edible, better competitors to more resistant producers over enrichment gradients (as anticipated by the food web model built with a tradeoff in resistance vs. competitive abilities). However, contrary to our expectations, “historically ungrazed” assemblages became dominated by producers with vulnerable juvenile forms but inedible adult forms (long filaments). Consequently, we observed higher resource limitation rather than grazer limitation over this nutrient supply gradient in both “historically grazed” (expected) and “historically ungrazed” (not initially expected). Thus, via multiple, general mechanisms involving resistance to grazing (changes in species composition or variation in stage-structured vulnerability), producer assemblages should remain more strongly or as strongly limited by nutrients than grazers, even over large enrichment gradients. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Cross-Scale Variation in Biodiversity-Environment Links Illustrated by Coastal Sandflat Communities

Spatial variation in the composition of communities is the product of many biotic and environmental interactions. A neglected factor in the analysis of community distribution patterns is the multi-scale nature of the data, which has implications for understanding ecological processes and the development of conservation and environmental management practice. Drawing on recently established multivariate spatial analyses, we investigate whether including relationships between spatial structure and abiotic variables enable us to better discern patterns of species and communities across scales. Data comprised 1200 macrozoobenthic samples collected over an array of distances (30 cm to 1 km) in three New Zealand harbours, as well as commonly used abiotic variables, such as sediment characteristics and chlorophyll a concentrations, measured at the same scales. Moran’s eigenvector mapping was used to extract spatial scales at which communities were structured. Benthic communities, representing primarily bivalves, polychaetes and crustaceans, were spatially structured at four spatial scales, i.e. >100 m, 50–100 m, 50–15 m, and < 15 m. A broad selection of abiotic variables contributed to the large-scale variation, whereas a more limited set explained part of the fine-scale community structure. Across all scales, less than 30% of the variation in spatial structure was captured by our analysis. The large number of species (48) making up the 10 highest species scores based on redundancy analyses illustrate the variability of species-scale associations. Our results emphasise that abiotic variables and biodiversity are related at all scales investigated and stress the importance of assessing the relationship between environmental variables and the abundance and distribution of biological assemblages across a range of different scales.     

Disturbance,fish, and variation in the predatory insect guild of coastal streams

Species distributions, and thus the composition of communities, are determined by many interacting biotic and abiotic factors. We analyzed the variation in composition of the invertebrate predator guild across eight small, steep coastal streams in eastern Canada, in relation to variation in several broad categories of environmental variables: disturbance-related physical characteristics, top-down effects (fish), and bottom-up effects (prey composition and productivity-related physical/chemical variables). Similarity in composition (relative and absolute abundances of the 19 species belonging to the Rhyacophilidae, Perlodidae, and Chloroperlidae) declined significantly with distance. Streams that were most similar in predator composition were also most similar in physical factors related to disturbance, but were not more similar in prey abundance/composition or in environmental factors associated with productivity (chemistry, canopy cover, and riparian forest type). Similarity in the relative abundance of species within the Rhyacophilidae was linked to variation in the presence/abundance of brook trout. These results suggest that the invertebrate predator guilds of these small coastal streams are structured first and foremost by factors associated with the magnitude and variability of the flow regime, and second by response to top-down factors (predation by brook trout). There was no evidence that bottom-up effects altered the composition or abundance of the predator guild. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users. Handling editor: Sonja Stendera     

Invariance in species-abundance distributions

Many attempts to explain the species-abundance distribution (SAD) assume that it has a universal functional form which applies to most assemblages. However, if such a form does exist, then it has to be invariant under changes in the area of the study plot (the addition of neighboring areas or subdivision of the original area) and changes in taxonomic composition (the addition of sister taxa or subdivision to subtaxa). We developed a theory for such an area-and-taxon invariant SAD and derived a formula for such a distribution. Both the log-normal and our area-and-taxon invariant distribution fitted data well. However, the log-normal distributions of two adjoined sub-assemblages cannot be composed into a log-normal distribution for the resulting assemblage, and the SAD composed from two log-normal distributions fits the SAD for the assemblage poorly in comparison to the area-and-taxon invariant distribution. Observed abundance patterns therefore reveal area-and-taxon invariant properties absent in log-normal distributions, suggesting that multiplicative models generating log-normal-like SADs (including the power-fraction model) cannot be universally valid, as they necessarily apply only to particular scales and taxa. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

The influence of substrates and physicochemical factors on the composition of diatom assemblages in karst springs and their applicability in water-quality assessment

The methodological standards of monitoring programs recommend collecting material from stones, but this community is often absent in slow-flowing waters, whereas a great number of localities do offer bryophytic material for sampling. In order to investigate whether the kind of substrate (epilithic or bryophytic) influences the diatom-based biomonitoring results the structure of diatom assemblages from 13 anthropogenically altered springs were investigated. To examine differences between diatom assemblages, the species richness of diatom assemblages, H′ (Shannon-Wiener diversity index), Trophic Diatom Index (TDI) and Specific Pollution sensitivity Index (SPI) were compared. The TDI and SPI differed significantly (P = 0.002 and P = 0.004) between springs located in villages and springs away from villages, and did not differ significantly between epilithic and bryophytic samples (P > 0.05). No significant differences in species richness or the diversity index (H′) (P > 0.05) were found between the epilithic and bryophytic diatom assemblages. This study suggests that both the kinds of substrates can be successfully used for diatom-based water-quality biomonitoring in mesotrophic and eutrophic environments.     

Assemblages in a submarine canyon: influence of depth and time

In this work we have studied the assemblages from Quirra canyon (Sardinia). We analysed data from 25 trawl samples from the canyon, made at different times and depth. A total of 71 demersal species (38 teleosts, 5 cartilaginous fishes, 13 molluscs and 15 crustaceans) were examined. We found four groups using cluster analysis; each group is characterised by a certain depth or time. In particular we have shown that the time of the day appears to have a role in the movement of shrimps and other species. This phenomenon seems to be linked to trophic need and by the consequent different food availability into the Canyon. Electronic supplementary material Supplementary material is available for this article at and accessible for authorised users