Terrestrial and marine perspectives on modeling organic matter degradation pathways

Organic matter (OM) plays a major role in both terrestrial and oceanic biogeochemical cycles. The amount of carbon stored in these systems is far greater than that of carbon dioxide (CO₂) in the atmosphere, and annual fluxes of CO₂ from these pools to the atmosphere exceed those from fossil fuel combustion. Understanding the processes that determine the fate of detrital material is important for predicting the effects that climate change will have on feedbacks to the global carbon cycle. However, Earth System Models (ESMs) typically utilize very simple formulations of processes affecting the mineralization and storage of detrital OM. Recent changes in our view of the nature of this material and the factors controlling its transformation have yet to find their way into models. In this review, we highlight the current understanding of the role and cycling of detrital OM in terrestrial and marine systems and examine how this pool of material is represented in ESMs. We include a discussion of the different mineralization pathways available as organic matter moves from soils, through inland waters to coastal systems and ultimately into open ocean environments. We argue that there is strong commonality between aspects of OM transformation in both terrestrial and marine systems and that our respective scientific communities would benefit from closer collaboration.     

陆地碳循环的动态非平衡假说

生态系统维持物质与能量的动态平衡是地球系统孕育与维持生物多样性的重要基础。自工业革命以来, 人类活动导致陆地生态系统的碳循环转变为动态非平衡,进而使陆地生态系统的结构与功能出现许多难以预测的变化动态。本文阐释了陆地生态系统碳循环的动态非平衡假说。该假说构建于陆地碳循环内部过程的四点基本特征和五类外部驱动因素。基于这些内部特征与外部因素, 本文归纳了陆地生态系统碳循环动态非平衡在不同时间与空间尺度的表达现象, 并从观测、实验与模型的角度讨论了其检测方法。陆地生态系统碳循环的动态非平衡假说不仅有助于我们理解复杂的陆地碳循环现象, 也为预测未来陆地碳汇动态提供了新的理论框架。     

Terrestrial fluxes of carbon in GCP carbon budgets

The Global Carbon Project (GCP) has published global carbon budgets annually since 2007 (Canadell et al. [2007], Proc Natl Acad Sci USA, 104, 18866–18870; Raupach et al. [2007], Proc Natl Acad Sci USA, 104, 10288–10293). There are many scientists involved, but the terrestrial fluxes that appear in the budgets are not well understood by ecologists and biogeochemists outside of that community. The purpose of this paper is to make the terrestrial fluxes of carbon in those budgets more accessible to a broader community. The GCP budget is composed of annual perturbations from pre‐industrial conditions, driven by addition of carbon to the system from combustion of fossil fuels and by transfers of carbon from land to the atmosphere as a result of land use. The budget includes a term for each of the major fluxes of carbon (fossil fuels, oceans, land) as well as the rate of carbon accumulation in the atmosphere. Land is represented by two terms: one resulting from direct anthropogenic effects (Land Use, Land‐Use Change, and Forestry or land management) and one resulting from indirect anthropogenic (e.g., CO₂, climate change) and natural effects. Each of these two net terrestrial fluxes of carbon, in turn, is composed of opposing gross emissions and removals (e.g., deforestation and forest regrowth). Although the GCP budgets have focused on the two net terrestrial fluxes, they have paid little attention to the gross components, which are important for a number of reasons, including understanding the potential for land management to remove CO₂ from the atmosphere and understanding the processes responsible for the sink for carbon on land. In contrast to the net fluxes of carbon, which are constrained by the global carbon budget, the gross fluxes are largely unconstrained, suggesting that there is more uncertainty than commonly believed about how terrestrial carbon emissions will respond to future fossil fuel emissions and a changing climate.     

Biodiversity and biogeography of the atmosphere

The variation of life has predominantly been studied on land and in water, but this focus is changing. There is a resurging interest in the distribution of life in the atmosphere and the processes that underlie patterns in this distribution. Here, we review our current state of knowledge about the biodiversity and biogeography of the atmosphere, with an emphasis on micro-organisms, the numerically dominant forms of aerial life. We present evidence to suggest that the atmosphere is a habitat for micro-organisms, and not purely a conduit for terrestrial and aquatic life. Building on a rich history of research in terrestrial and aquatic systems, we explore biodiversity patterns that are likely to play an important role in the emerging field of air biogeography. We discuss the possibility of a more unified understanding of the biosphere, one that links knowledge about biodiversity and biogeography in the lithosphere, hydrosphere and atmosphere.     

Metallothionein research in terrestrial invertebrates: Synopsis and perspectives

While most of metallothionein research during the past years has been carried out on mammals or vertebrates, only relatively few studies have been directed towards invertebrates. Even fewer investigations have focussed on terrestrial invertebrates. The best studied metallothioneins and/or metallothionein genes among terrestrial invertebrates are those from an insect species (Drosophila melanogaster), a nematode (Caenorhabditis elegans) and some terrestrial gastropods (Helix pomatia, Arianta arbustorum). From these few examples it already appears that terrestrial invertebrate metallothioneins provide intriguing models to better understand the multiplicity of functions of these proteins and their evolution within the animal kingdom. Like in mammals, metallothioneins in terrestrial invertebrates seem to perform different functions simultaneously. This is exemplified by terrestrial gastropods, which are able to accumulate different metals in different tissues, in which metal-specific metallothionein isoforms or conformation forms are expressed, allowing these organisms to detoxify more efficiently nonessential trace elements such as cadmium, and at the same time to maintain the homeostasis of essential trace elements such as copper. A major proportion of metallothionein research in terrestrial invertebrates addresses the ecophysiological and ecotoxicological significance of these proteins with regard to the increasing risk due to chemical pollution. One promising aspect in this concern is the potential utilization of metallothioneins as biomarkers for risk assessment in terrestrial environments.     

NEECF: a project of nutrient enrichment experiments in China's forests

Anthropogenic nitrogen (N) emissions to atmosphere have increased dramatically in China since 1980s, and this increase has aroused great concerns on its ecological impacts on terrestrial ecosystems. Previous studies have showed that terrestrial ecosystems in China are acting as a large carbon (C) sink, but its potential in the future remains largely uncertain. So far little work on the impacts of the N deposition on C sequestration in China's terrestrial ecosystems has been assessed at a national scale. Aiming to assess and predict how ecological processes especially the C cycling respond to the increasing N deposition in China's forests, recently researchers from Peking University and their partners have established a manipulation experimental network on the ecological effects of the N deposition: Nutrient Enrichment Experiments in China's Forests Project (NEECF). The NEECF comprises 10 experiments at 7 sites located from north to south China, covering major zonal forest vegetation in eastern China from boreal forest in Greater Khingan Mountains to tropical forests in Hainan Island. This paper introduces the framework of the NEECF project and its potential policy implications.     

The effect of season and terrestrial biome on the abundance of bacteria with plant growth-promoting traits in the lower atmosphere

Recent studies indicate that airborne bacteria follow biogeographical distributions that are influenced by the underlying terrestrial biomes. Nonetheless, dynamics of bacterial fluxes between different terrestrial biomes and the atmosphere and their implications for terrestrial ecology are not well understood. This study examined how season and three different terrestrial biomes affect the abundance of culturable bacteria with three types of plant growth-promoting traits (PGPTs; phosphate-solubilization, siderophore-production, indoleacetic acid production) in the lower atmosphere. Air samples (180 L) were collected onto Petri dishes containing one of three different agar media for cultivating bacteria with the above-named PGPT in replicates of five above three distinct terrestrial biomes (aspen-forest, sagebrush-steppe, and suburban; Pocatello, ID, USA). Air was sampled once per week for three consecutive weeks during each of four seasons (autumn 2014 to summer 2015). Sequence libraries (16S rRNA gene) were also generated from air collected at each site during each sampling event. All three types of bacteria were present in the lower atmosphere above all terrestrial biomes during all seasons, but their abundance (P < 0.05) fluctuated with season, and the abundance of phosphate-solubilizers and siderophore-producers fluctuated with the interaction of biome and season (P < 0.05). Cultured bacteria with PGPTs represented 13 families; these families were also represented by 28.3–61.3 % of sequences in each of the 36-sequence libraries derived from air samples. Results of this first survey of airborne bacteria with PGPTs provide evidence that they may be ubiquitous in the lower atmosphere through which their transport to new habitats, particularly those in early successional stages, may impact ecosystem development.     

The influence of terrestrial ecosystems on climate

Terrestrial ecosystems influence climate by affecting how much solar energy is absorbed by the land surface and by exchanging climatically important gases with the atmosphere. Recent model analyses show widespread qualitative agreement that terrestrial ecological processes will have a net positive feedback effect on 21st-century global warming, and, therefore, cannot be ignored in climate-change projections. However, the quantitative uncertainty in the net feedback is large. The uncertainty in 21st-century carbon dioxide emissions resulting from terrestrial carbon cycle-climate feedbacks is second in magnitude only to the uncertainty in anthropogenic emissions. We estimate that this translates into an uncertainty in global warming owing to the land surface of 1.5 degrees C by 2100. We also emphasise the need to improve our understanding of terrestrial ecological processes that influence land-atmosphere interactions at relatively long timescales (decadal-century) as well as at shorter intervals (e.g. hourly).     

Pathways to Earth-Like Atmospheres

We discuss the evolution of the atmosphere of early Earth and of terrestrial exoplanets which may be capable of sustaining liquid water oceans and continents where life may originate. The formation age of a terrestrial planet, its mass and size, as well as the lifetime in the EUV-saturated early phase of its host star play a significant role in its atmosphere evolution. We show that planets even in orbits within the habitable zone of their host stars might not lose nebular- or catastrophically outgassed initial protoatmospheres completely and could end up as water worlds with CO₂ and hydrogen- or oxygen-rich upper atmospheres. If an atmosphere of a terrestrial planet evolves to an N₂-rich atmosphere too early in its lifetime, the atmosphere may be lost. We show that the initial conditions set up by the formation of a terrestrial planet and by the evolution of the host star’s EUV and plasma environment are very important factors owing to which a planet may evolve to a habitable world. Finally we present a method for studying the discussed atmosphere evolution hypotheses by future UV transit observations of terrestrial exoplanets.     

菌根真菌对土壤呼吸以及凋落物分解的影响

土壤呼吸是植物固定的碳由陆地生态系统进入大气的主要途径之一; 凋落物分解是养分循环的重要环节。陆地植物的90%以上可同菌根真菌形成共生关系, 菌根真菌对于植物获取环境中的养分具有重要的作用。然而, 其对土壤呼吸和凋落物分解的影响却经常在生态系统对环境变化的响应研究中被忽视。本文系统地综述了国内外相关研究进展, 对菌根真菌如何影响土壤呼吸和凋落物分解这两个过程及这种影响如何受到环境变化的制约做了全面的分析, 并对以往研究中存在的问题以及未来的研究方向提出了展望。     

陆地生物圈模型的发展与应用

陆地生物圈与大气圈和水圈之间能量、水和碳氮等元素的交换和循环对整个地球系统产生了深刻的影响。陆地生物圈模型(TBM)是研究陆地生态系统如何响应和反馈全球变化的重要方法和工具。通过对从生态系统到区域和全球陆地生物圈不同空间尺度的植被动态、生物地球物理和生物地球化学循环过程、水循环和水文过程、自然干扰和人类活动等过程时间动态的模拟, 陆地生物圈模型被广泛地应用于评估和归因过去陆地生物圈的时空变化和预测陆地生物圈对未来全球变化的响应和反馈。该文简要回顾了陆地生物圈模型的发展, 总结了模型对陆地生态系统主要过程的刻画和模型在生态系统生态学的应用, 并对未来陆地生物圈模型的发展和应用进行了展望。     

Aquatic carbon fluxes dampen the overall variation of net ecosystem productivity in the Amazon basin: An analysis of the interannual variability in the boundless carbon cycle

The river–floodplain network plays an important role in the carbon (C) cycle of the Amazon basin, as it transports and processes a significant fraction of the C fixed by terrestrial vegetation, most of which evades as CO₂ from rivers and floodplains back to the atmosphere. There is empirical evidence that exceptionally dry or wet years have an impact on the net C balance in the Amazon. While seasonal and interannual variations in hydrology have a direct impact on the amounts of C transferred through the river–floodplain system, it is not known how far the variation of these fluxes affects the overall Amazon C balance. Here, we introduce a new wetland forcing file for the ORCHILEAK model, which improves the representation of floodplain dynamics and allows us to closely reproduce data‐driven estimates of net C exports through the river–floodplain network. Based on this new wetland forcing and two climate forcing datasets, we show that across the Amazon, the percentage of net primary productivity lost to the river–floodplain system is highly variable at the interannual timescale, and wet years fuel aquatic CO₂ evasion. However, at the same time overall net ecosystem productivity (NEP) and C sequestration are highest during wet years, partly due to reduced decomposition rates in water‐logged floodplain soils. It is years with the lowest discharge and floodplain inundation, often associated with El Nino events, that have the lowest NEP and the highest total (terrestrial plus aquatic) CO₂ emissions back to atmosphere. Furthermore, we find that aquatic C fluxes display greater variation than terrestrial C fluxes, and that this variation significantly dampens the interannual variability in NEP of the Amazon basin. These results call for a more integrative view of the C fluxes through the vegetation‐soil‐river‐floodplain continuum, which directly places aquatic C fluxes into the overall C budget of the Amazon basin.     

Drought: The most important physical stress of terrestrial ecosystems

Drought is projected to become more prevalent in the future due to climate change, and its impact on the fate of terrestrial ecosystems has aroused great concern in the scientific community over the past decade. Mounting evidence suggests that drought may be the most important physical stress of terrestrial ecosystems: drought limits vegetation growth, increases wildfires, and induces tree mortality, among other impacts. Drought not only weakens the carbon sink function of terrestrial ecosystems but also may interfere directly or indirectly with biosphere–atmosphere interactions, further exacerbating climate change. This paper reviews the current evidence of the impacts of drought on terrestrial ecosystems, with particular emphasis on the ways in which drought alters the biological, biogeophysical and biogeochemical processes underlying the interaction between the biosphere and the atmosphere.     

The prospect of life on Jupiter

Recent research into the possibility of there being life in the Solar System other than on the Earth has suggested that Jupiter may be a good candidate. The reactions within its atmosphere, both photolytic and electrical, lead to the formation of many nitrile and amino compounds. We have simulated electrical discharges in the Jovian atmosphere, using anhydrous methane-ammonia mixtures, and shown the formation of simple aliphatic nitriles, amino-nitriles, and their oligomers. Including hydrogen sulfide in the gas mixture, it appears that sulfur-containing amino-nitriles are not formed, since the hydrolysate of the products did not contain the corresponding amino-acids. There is a strong analogy between these reactions and the classical spark reactions simulating the primitive Earth's atmosphere. We are attempting a closer simulation of Jupiter's atmosphere by using appropriate temperature and pressure conditions. It seems that prebiotic synthesis on Jupiter may have reached an advanced state. As an alternative approach we have tested the survival ability of common terrestrial microorganisms in aqueous media at 102 atmospheres pressure and at 20°C. in a simulated Jovian atmosphere.E. coli, S. marcescens, A. aerogenes andB. subtilis will all tolerate 24 h. under these conditions with conditions with little death. The ability of terrestrial organisms to survive Jovian atmospheric conditions, coupled with the likelihood of advanced prebiotic synthesis, suggests that a parallel evolution of life may have occurred on Jupiter and Earth, and that the two forms need not be so different as has been supposed. Lunar Science Institute Contribution.     

Spatial variability in airborne bacterial communities across land-use types and their relationship to the bacterial communities of potential source environments

Although bacteria are ubiquitous in the near-surface atmosphere and they can have important effects on human health, airborne bacteria have received relatively little attention and their spatial dynamics remain poorly understood. Owing to differences in meteorological conditions and the potential sources of airborne bacteria, we would expect the atmosphere over different land-use types to harbor distinct bacterial communities. To test this hypothesis, we sampled the near-surface atmosphere above three distinct land-use types (agricultural fields, suburban areas and forests) across northern Colorado, USA, sampling five sites per land-use type. Microbial abundances were stable across land-use types, with ∼10⁵–10⁶ bacterial cells per m³ of air, but the concentrations of biological ice nuclei, determined using a droplet freezing assay, were on average two and eight times higher in samples from agricultural areas than in the other two land-use types. Likewise, the composition of the airborne bacterial communities, assessed via bar-coded pyrosequencing, was significantly related to land-use type and these differences were likely driven by shifts in the sources of bacteria to the atmosphere across the land-uses, not local meteorological conditions. A meta-analysis of previously published data shows that atmospheric bacterial communities differ from those in potential source environments (leaf surfaces and soils), and we demonstrate that we may be able to use this information to determine the relative inputs of bacteria from these source environments to the atmosphere. This work furthers our understanding of bacterial diversity in the atmosphere, the terrestrial controls on this diversity and potential approaches for source tracking of airborne bacteria.     

Carbon dioxide on the early earth

This paper uses arguments of geochemical mass balance to arrive at an estimate of the partial pressure of carbon dioxide in the terrestrial atmosphere very early in earth history. It appears that this partial pressure could have been as large as 10 bars. This large estimate depends on two key considerations. First, volatiles were driven out of the interior of the earth during the course of earth accretion or very shortly thereafter. This early degassing was a consequence of rapid accretion, which gave the young earth a hot and rapidly convecting interior. Second, the early earth lacked extensive, stable continental platforms on which carbon could be stored in the form of carbonate minerals for geologically significant periods of time. In the absence of continental platforms on the early earth, the earth's carbon must have been either in the atmosphere or ocean or in the form of shortlived sedimentary deposits on ephemeral sea floor.     

An approach to balancing the positive and negative effects of elevated nitrogen oxides in the lower atmosphere on terrestrial plants

Elevated NOx in the lower atmosphere has three major effects on terrestrial plants. On the one hand, it causes an increase in surface ozone concentration. This reduces plant growth rate. On the other hand, elevated NOx causes an increase in the flux of oxidized N compounds from the atmosphere to the land surface. This plays a dual role in the life of terrestrial plants. Additional N in soils stimulates plant growth (N-fertilization effect), whereas soil acidification may negatively affect plants. A simple empirical model for calculating the overall effect of anthropogenic increase in NOx level has been developed. The model is based on experimental "cause-response" data presented in world scientific literature. Calculations showed that at the large scale, among the above-mentioned changes, elevated O3 plays a major and negative role in plant life. Its negative effect on plants is partly compensated by N fertilization in unmanaged ecosystems. Such compensation appears to be negligible in agricultural lands. There are vast territories in Euro--Asia--for instance, a territory of Russia--in which acid atmospheric deposition has no significant effect on terrestrial plants.     

干旱对陆地生态系统生产力的影响

该文综述了干旱对陆地生态系统生产力的影响,分析了其影响机制,并总结了植被对干旱的响应与适应及其机理机制。干旱通过抑制光合作用来降低陆地生态系统总初级生产力,干旱还可以降低生态系统的自养呼吸和异养呼吸。同时干旱还可以通过影响其它干扰形式来间接影响陆地生态系统生产力,如增加火干扰的发生频率和强度,增加植物的死亡率,增加病虫害的发生等。在生态系统水平上干旱可以降低碳固定,减弱碳汇功能,甚至把生态系统从碳汇改变成碳源。目前生态系统水平上的干旱影响研究主要通过两种方法实现,一种是模型模拟,另一种就是大型模拟实验。作为陆地生态系统生产力的实现者,在干旱胁迫条件下,植物也会采取积极的适应策略以减弱干旱对生态系统生产力的影响,其适应策略主要分以下3种:在一些周期性发生干旱的地区,植物会调整生长期以避开干旱或通过休眠来减弱干旱所造成的伤害;还有一些植物会通过调节体内的代谢过程,改变一些生理特性来抵御干旱;而长期生活在干旱条件下的植物则通过进化来改变了自身的生理生化代谢过程,形成耐旱机制。目前,植物对干旱响应的分子学机制,以及生态系统水平上对干旱的响应和适应仍然是薄弱的领域,也必然成为未来研究的重点。     

Bacteria mediate methylation of iodine in marine and terrestrial environments

Methyl iodide (CH(3)I) plays an important role in the natural iodine cycle and participates in atmospheric ozone destruction. However, the main source of this compound in nature is still unclear. Here we report that a wide variety of bacteria including terrestrial and marine bacteria are capable of methylating the environmental level of iodide (0.1 microM). Of the strains tested, Rhizobium sp. strain MRCD 19 was chosen for further analysis, and it was found that the cell extract catalyzed the methylation of iodide with S-adenosyl-L-methionine as the methyl donor. These results strongly indicate that bacteria contribute to iodine transfer from the terrestrial and marine ecosystems into the atmosphere.     

New cases of Diphyllobothrium pacificum (Nybelin, 1931) Margolis, 1956 human infection in North of Chile,probably related with El Niño phenomenon, 1975-2000

The effect of El Ni?o/ENSO on terrestrial atmosphere appears to be extremely clear. However there are outstanding evidences showing its effect on humans and their activities. In fact, prevalence of some parasitic infections have increased during El Ni?o phenomenon. The reasons for that are the migrations of sylvatic mammals, fishes and birds as well as by environmental contamination. In this report, we show evidence respect of new cases of human infection by Diphyllobothrium pacificum clearly associated with a cyclic manifestation of El Ni?o in the Chilean Pacific coast during 1975-2000.