Delineating fine-scale genetic units in amphibians:Probing the primacy of ponds

The population structure of pond-breeding amphibians is shaped by their distinct breeding foci, but it is unclear to what extent this is reflected in the fine-scale distribution of genetic diversity. We used microsatellite genotypes to investigate the genetic signatures of 24 populations of European newts, Triturus cristatus and T. marmoratus, inhabiting 21 ponds in a confined study area (7.5×3.5km) in western France. Employing a Bayesian clustering approach based on individual genotypes that minimises departures from Hardy–Weinberg equilibrium and linkage disequilibrium, no evidence was found for within-pond substructuring. Subjecting all sampled ponds simultaneously to this procedure revealed a clear signal of partitioning, with the most likely number of clusters however below the actual number of ponds (seven in T. cristatus, three in T. marmoratus). A more hierarchical Bayesian approach, with pond as analysis unit, was achieved to separate ponds from genetically more meaningful units, and reduced the T. cristatus populations to 11 clusters, and the T. marmoratus populations to five clusters. We were unable to specify a minimum nearest-neighbour distance where ponds are separate units, probably due to both historical and current demographic processes. The implications for strategies to manage and conserve endangered amphibians in human-altered landscapes are discussed.     

Testing the hybrid superiority hypothesis in crested and marbled newts

We tested the hybrid superiority hypothesis in the zone of overlap and hybridization of the newts Triturus cristatus and T. marmoratus. To do so, we compared size, age, and growth-related parameters in F₁ hybrids and both parental species in Mayenne, France. We found significant differences in snout-vent length (SVL), body mass and average lifespan between the parental species and hybrids, increasing from T. cristatus – T. marmoratus – hybrids. The relation between age and SVL fitted von Bertalanffy's growth model and showed that SVL_max was significantly larger in hybrids than in the parental species, while the growth coefficient was lower in hybrids and T. marmoratus than in T. cristatus. Triturus cristatus appears to be the better competitor, since it attains sexual maturity faster and thus achieves more annual breeding opportunities. At the evolutionary level, the observed heterosis appears not to have further consequences as the hybrids are largely infertile. Our results support the hypothesis raised for the genus Triturus, that infertile hybrids allocate resources to growth.     

Micro-habitat use within a guild of newt larvae (Trituridae) in an Alpine lake

Population and ecological parameters such as numbers of larvae, microhabitat use, niche breadth and niche overlap of three species of syntopic larval newts (Alpine newt Triturus alpestris, Italian crested newt T. carnifex, and common newt T. vulgaris) were studied for two years in a small pond at 1160 m a.s.l. in NE Slovenia. Differences in microhabitat partitioning among larval newts were small. The largest niche breadth was estimated for larval T. alpestris, and the narrowest estimate was for larval T. carnifex in both years. Ecological differences seem to be very small and quite variable among sites and years. It appears that the developmental stage and size of newt larvae are more important in explaining resource partitioning than the characteristics of each species. Because of the absence of potential invertebrate predators and adult newts in the second half of the breeding season, the injuries could only be caused by intra-and interspecific predation attempts.     

RESTRICTED GENE FLOW IN A MOVING HYBRID ZONE OF THE NEWTS TRITURUS CRISTATUS AND T. MARMORATUS IN WESTERN FRANCE

Two hybridizing species of newts, Triturus cristatus and T. marmoratus, with overlapping distributions show a parapatric distribution when surveyed in detail. The factors that govern the distribution of cristatus vs. marmoratus in the département (province) of Mayenne in western France are identified as forestation and relief. The parapatric hybrid zone running through Mayenne is narrow but widens to approximately 20 km in an area with mixed habitat. In this area most breeding sites are shared and F₁ hybrids form about 4% of the total population. Analysis of survey data collected about 30 years previously also shows an essentially parapatric distribution. Comparison of past and present distribution maps reveals that cristatus has superseded marmoratus over large areas in the south of Mayenne. An area where marmoratus replaced cristatus also exists, but it is more limited in size. Gene flow between cristatus and marmoratus is analyzed using 10 diagnostic genetic markers [9 protein loci and mitochondrial (mt) DNA]. In syntopic populations nuclear gene flow is bidirectional with a mean frequency of introgressed alleles (f) of 0.3%. In allotopic populations of cristatus and marmoratus gene flow is present in areas of species replacement (f = 0.3%), while gene flow appears to be absent in those areas that have been continuously occupied by a single species. At the biogeographic level, the presence or absence of introgression is paralleled by the persistence or absence, respectively, of pockets of cristatus–marmoratus syntopy. All F₁ hybrids possess the cristatus type mtDNA. This may be due to asymmetric interspecific mate choice and would explain the observed absence of introgression of the maternally inherited mtDNA genome in areas where cristatus replaced marmoratus. The cristatus–marmoratus hybrid zone bears characteristics of both the clinal (parapatric) hybrid zone model and the mosaic hybrid zone model. Such a mixed model—for which we propose the term “reticulate hybrid zone”—can be appreciated only if studied over a two-dimensional geographic area and also through time.     

Stabilization of a salamander moving hybrid zone

When related species meet upon postglacial range expansion, hybrid zones are frequently formed. Theory predicts that such zones may move over the landscape until equilibrium conditions are reached. One hybrid zone observed to be moving in historical times (1950–1979) is that of the pond‐breeding salamanders Triturus cristatus and Triturus marmoratus in western France. We identified the ecological correlates of the species hybrid zone as elevation, forestation, and hedgerows favoring the more terrestrial T. marmoratus and pond density favoring the more aquatic T. cristatus. The past movement of the zone of ca. 30 km over three decades has probably been driven by the drastic postwar reduction of the “bocage” hedgerow landscape, favoring T. cristatus over T. marmoratus. No further hybrid zone movement was observed from 1979 to the present. To explain the changing dynamics of the hybrid zone, we propose that it stalled, either because an equilibrium was found at an altitude of ca. 140 m a.s.l. or due to pond loss and decreased population densities. While we cannot rule out the former explanation, we found support for the latter. Under agricultural intensification, ponds in the study area are lost at an unprecedented rate of 5.5% per year, so that remaining Triturus populations are increasingly isolated, hampering dispersal and further hybrid zone movement.     

Needle in a haystack? A comparison of eDNA metabarcoding and targeted qPCR for detection of the great crested newt (Triturus cristatus)

Environmental DNA (eDNA) analysis is a rapid, cost‐effective, non‐invasive biodiversity monitoring tool which utilises DNA left behind in the environment by organisms for species detection. The method is used as a species‐specific survey tool for rare or invasive species across a broad range of ecosystems. Recently, eDNA and “metabarcoding” have been combined to describe whole communities rather than focusing on single target species. However, whether metabarcoding is as sensitive as targeted approaches for rare species detection remains to be evaluated. The great crested newt Triturus cristatus is a flagship pond species of international conservation concern and the first UK species to be routinely monitored using eDNA. We evaluate whether eDNA metabarcoding has comparable sensitivity to targeted real‐time quantitative PCR (qPCR) for T. cristatus detection. Extracted eDNA samples (N = 532) were screened for T. cristatus by qPCR and analysed for all vertebrate species using high‐throughput sequencing technology. With qPCR and a detection threshold of 1 of 12 positive qPCR replicates, newts were detected in 50% of ponds. Detection decreased to 32% when the threshold was increased to 4 of 12 positive qPCR replicates. With metabarcoding, newts were detected in 34% of ponds without a detection threshold, and in 28% of ponds when a threshold (0.028%) was applied. Therefore, qPCR provided greater detection than metabarcoding but metabarcoding detection with no threshold was equivalent to qPCR with a stringent detection threshold. The proportion of T. cristatus sequences in each sample was positively associated with the number of positive qPCR replicates (qPCR score) suggesting eDNA metabarcoding may be indicative of eDNA concentration. eDNA metabarcoding holds enormous potential for holistic biodiversity assessment and routine freshwater monitoring. We advocate this community approach to freshwater monitoring to guide management and conservation, whereby entire communities can be initially surveyed to best inform use of funding and time for species‐specific surveys.     

Emergence of the damselfly Pyrrhosoma nymphula (Sulzer) (Zygoptera: Coenagrionidae) from two adjacent ponds in northern England

Emergence of the damselfly Pyrrhosoma nymphula was followed closely at two similar and adjacent ponds in northern England. Males emerged earlier than females at both ponds (significantly so at one). The sex ratio was significantly male biased at both ponds. Size of emerging adults declined through the emergence period at both ponds. Adults emerging from one pond did so significantly earlier and were significantly larger than those from the other pond. The density of larvae was approximately twice as high in the pond from which larvae emerged early; this pond was also slightly deeper and usually achieved higher maximum daily water temperatures. These findings are discussed in the light of the conventional view of seasonal regulation in a spring-emerging damselfly.     

Estimating hydroperiod suitability for breeding amphibians in southern Rhode Island seasonal forest ponds

In New England, seasonal forest ponds provide primary breeding habitat for several amphibian species, including Rana sylvatica (LeConte) and Ambystoma maculatum (Shaw). Because each species requires a minimum duration of inundation to complete its breeding cycle, one of the most important factors determining habitat suitability is a pond’s hydroperiod. The objective of this research was to develop a method for estimating pond hydroperiod from site characteristics such as pond morphology, geology, chemistry, and vegetation structure, and to use the estimates to assess the suitability of individual ponds for breeding amphibians. We monitored the duration of surface inundation in 65 ponds in the Pawcatuck River watershed of southern Rhode Island during 2001 and 2002. Pond hydroperiods, measured from 1 March, ranged from 19 to 44 weeks in 2001 and from 2 to 44 weeks in 2002; mean values were 30 and 21 weeks, respectively. Akaike’s Information Criterion was used to select a multivariate hydroperiod estimation model (R² = 0.59, p < 0.0001) that permitted identification of ponds with hydroperiods suitable for breeding by R. sylvatica (95.4% correct classification rate [CCR]) and A. maculatum (75.4% CCR). Canopy cover, open basin depth, and specific conductance of surface water were among the most useful site characteristics for estimating hydroperiod, while surficial geology and the texture of soil parent material made smaller contributions. The CCR using open basin depth alone was 95.4 and 73.8%, respectively. These findings indicate that it is possible to estimate the hydroperiod of seasonal ponds – and to assess their suitability for individual species of breeding amphibians – without prolonged periods of hydrologic monitoring. Such techniques could have considerable value to wetland regulatory agencies and for planning amphibian habitat management and acquisition at the landscape scale.     

Restoring ponds for amphibians: a success story

Large-scale restoration of quality habitats is often considered essential for the recovery of threatened pond-breeding amphibians but only a few successful cases are documented, so far. We describe a landscape-scale restoration project targeted at two declining species—the crested newt (Triturus cristatus Laur.) and the common spadefoot toad (Pelobates fuscus Wagler)—in six protected areas in southern and southeastern Estonia. The ponds were restored or created in clusters to (i) increase the density and number of breeding sites at local and landscape levels; (ii) provide adjacent ponds with differing depths, hydroperiods and littoral zones and (iii) restore an array of wetlands connected to appropriate terrestrial habitat. In only 3 years, where 22 of the 405 existing ponds (5%) were restored and 208 new ponds (51%) created, the number of ponds occupied by the common spadefoot toad increased 6.5 times. Concerning the crested newt and the moor frog (Rana arvalis Nilsson), the increase was 2.3 and 2.5 times, respectively. The target species had breeding attempts in most of the colonised ponds—even more frequently than common species. Also, the amphibian species richness was higher in the restored than in the untreated ponds. The crested newt preferably colonised ponds that had some submerged vegetation and were surrounded by forest or a mosaic of forest and open habitats. The common spadefoot toad favoured ponds having clear and transparent water. Our study reveals that habitat restoration for threatened pond-breeding amphibians can rapidly increase their numbers if the restoration is implemented at the landscape scale, taking into account the habitat requirements of target species and the ecological connectivity of populations. When the remnant populations are strong enough, translocation of individuals may not be necessary. Guest editors: B. Oertli, R. Cereghino, A. Hull & R. Miracle Pond Conservation: From Science to Practice. 3rd Conference of the European Pond Conservation Network, Valencia, Spain, 14–16 May 2008     

Galerucella nymphaeae (Col., Chrysomelidae) grazing increases Nuphar leaf production and affects carbon and nitrogen dynamics in ponds

Summary The grazing effects of the waterlily beetle Galerucella nymphaeae on Nuphar lutea stands were studied in three ponds in Central Finland. Production of floating leaves of N. lutea and growth in the G. nymphaeae population were investigated in the ponds and bioenergetics of the beetle larvae in the laboratory. Combination of field and laboratory data enabled estimation of the effect of the beetle on the production of floating leaves of N. lutea and the consequences of grazing for the input of detritus from Nuphar into the ponds. Adults and larvae of G. nymphaeae consumed 3.0–6.1% of the net annual floating leaf production during the growing period. In addition to consumption losses, feeding accelerated the degradation rate of the leaves. This was associated with an increased flow of detrital material of Nuphar origin, and also with increased production of floating leaves in the ponds. These increments were estimated to be up to 3 times greater in the presence of grazing than without it. Grazing by G. nymphaeae releases substantial amounts of carbon and nitrogen bound in Nuphar, particularly in ponds with a dense Nuphar vegetation. It is hypothesized that feeding by this beetle may markedly affect the structure and functioning of such small aquatic systems.     

Use of a magnetic compass for Y-axis orientation in premetamorphic newts (Triturus boscai)

Experiments were carried out to investigate whether premetamorphic larvae of Boscas newt (Triturus boscai) are capable of using the geomagnetic field for Y-axis orientation (i.e., orientation toward and away from shore). Larvae were trained outdoor in two different training configurations, using one training tank aligned along the magnetic north–south axis, with shore facing north, and another training tank positioned with its length along the east–west axis, with shore located west. After training, premetamorphic newts were tested in an outdoor circular arena surrounded by a pair of orthogonally aligned cube-surface coils used to alter the alignment of the Earths magnetic field. Each newt was tested only once, in one of four magnetic field alignments: ambient magnetic field (i.e., magnetic north at North), and three altered fields (magnetic north rotated to East, West, South). Distributions of magnetic bearings from tested larvae indicated that they oriented bimodally along the magnetic direction of the trained Y-axis. These findings demonstrate that T. boscai larvae are sensitive to the geomagnetic field and can use it for orienting along a learned Y-axis. This study is the first to provide evidence of Y-axis orientation, accomplished by a magnetic compass, in larval urodeles.     

Developmental morphology of the cottid fish Pseudoblennius marmoratus

Embryonic, larval, and juvenile development of a Japanese cottid fish Pseudoblennius marmoratus is described from laboratory-reared specimens. Eggs of P. marmoratus resembled those of two congeners, Pseudoblennius cottoides and Pseudoblennius percoides, but differed in their smaller diameter and yolk color. Although the larvae and juveniles of P. marmoratus were also similar to them in general morphology, the former differed in the lengths of newly hatched larvae, pigmentation patterns, number of pectoral fin rays, and dorsal fin spine elongation.     

Influence of gizzard shad on phytoplankton size and primary productivity in mesocosms and earthen ponds in the southeastern U.S.

Gizzard shad (Dorosoma cepedianum), a filter feeding omnivore, can consume phytoplankton, zooplankton and detritus and is a common prey fish in U.S. water bodies. Because of their feeding habits and abundance, shad have the potential to affect primary productivity (and hence water quality) directly through phytoplankton grazing and indirectly through zooplankton grazing and nutrient recycling. To test the ability of shad to influence primary productivity, we conducted a 16-day enclosure study (in 2.36-m³ mesocosms) and a 3-year whole-pond manipulation in 2–5 ha earthen ponds. In the mesocosm experiment, shad reduced zooplankton density and indirectly enhanced chlorophyll a concentration, primary productivity, and photosynthetic efficiency (assimilation number). While shad did not affect total phytoplankton density in the mesocosms, the density of large phytoplankton was directly reduced with shad. Results from the pond study were not consistent as predicted. There were few changes in the zooplankton and phytoplankton communities in ponds with versus ponds without gizzard shad. One apparent difference from systems in which previous work had been conducted was the presence of high densities of a potential competitor (i.e., larval bluegill) in our ponds. We suggest that the presence of these extremely high larval bluegill densities (20–350 larval bluegill m^–3; 3–700 times higher density than that of larval gizzard shad) led to the lack of differences between ponds with versus ponds without gizzard shad. That is, the influence of gizzard shad on zooplankton or phytoplankton was less than the influence of abundant bluegill larvae. Differences in systems across regions must be incorporated into our understanding of factors affecting trophic interactions in aquatic systems if we are to be able to manage these systems for both water quality and fisheries.     

Priority effects of the early breeding fire salamander on the late breeding banded newt

Early breeding intraguild predators may have advantages over late breeding predators via priority effects; early breeding predators may reduce shared prey resources before late breeders appear and may also prey upon the late breeders. Here we show that predatory larvae of the late-breeding predatory banded newt, Triturus vittatus vittatus, occupy the same temporary pond toward the end of the developmental period of the early-breeding predatory fire salamander, Salamandra salamandra, resulting in a large size disparity between larvae of these two species while they co-occur. We conducted outdoor artificial pool experiments to assess priority effects of large larval Salamandra at the end of their larval development period, on recently hatched larval Triturus. We also assessed how artificial vegetation may influence larval Triturus performance in the presence or absence of Salamandra Salamandra, introduced into the experimental pools two weeks prior to the newt larvae, strongly reduced invertebrate prey abundance shared by these two predatory urodeles and with only a one week period of overlap, strongly reduced abundance of Triturus larvae. The artificial vegetation had only a small ameliorating effect on Triturus survival when Salamandra was present. Triturus size at metamorphosis (snout-tail length) was significantly larger in the Salamandra pools, presumably due to a combination of a strong “thinning effect” and greater vulnerability of smaller Triturus individuals to predation by Salamandra. Time to metamorphosis was not significantly affected by Salamandra. These results have conservation implications as T. v. vittatus is listed as highly endangered and may also explain the largely negative spatial association of the two species. Handling editor: K. Martens     

Genetic variation in the Italian crested newt, Triturus carnifex, and the origin of a non-native population north of the Alps

Genetic variation over 40 protein loci and 46 populations representing three taxa of crested newts revealed moderate genetic distances between Triturus carnifex carnifex, T. c. macedonicus and T. cristatus. Two populations from the Geneva Basin (presumed to be introduced) were genetically similar to T. c. carnifex and dissimilar to T. c. macedonicus and T. cristatus, showing that they belong to T. c. carnifex and not to native T. cristatus. A significant pattern of spatial genetic variation was found within T. c. carnifex along a north to south axis, from Croatia to Calabria. The Genevan populations showed highest genetic similarity with T. carnifex from Tuscany, suggesting that the propagule originated from that area. Effects of a population genetic bottleneck associated with the introduction could not be documented. The observed high allelic variation in Genevan T. c. carnifex could not be directly explained by introgression from T. cristatus. Comparisons across the range, including zones of hybridization within the T. cristatus superspecies, indicated that some alleles typical for the Genevan population may represent the so-called `hybrizymes'.     

The effect of fertilization regime on juvenile walleye growth and prey utilization in rearing ponds

Synopsis The effect of two contrasting fertilization regimes on juvenile walleye growth, survival and harvest was tested in six identical rearing ponds treated with fermented soybean meal at either a constant (36 g m^–3week^–1) or a progressively reduced (32 to 0 g m^–3week^–1) rate. Walleye length, percent survival and biomass harvest in constant fertilization ponds were 32, 83 and 294% greater, respectively, than those of reduced fertilization ponds. Chironomid larvae and pupae were the dominant prey (in terms of biomass) in juvenile walleye larger than 22 mm TL. Mean chironomid biomass was significantly higher in the constant fertilization ponds (5.1 vs. 1.7 g dry wt m^–2), particularly after peak emergence around week 4. Zooplankton were less important prey after week 2, and mean zooplankton density was not significantly different between treatments. From these data we conclude that better walleye performance in the constant fertilization ponds was due to higher chironomid density during the last half of the experiment. Our findings are reviewed in light of current knowledge of juvenile walleye feeding ecology and contemporary pond culture procedures.     

Niche position, but not niche breadth, differs in two coexisting amphibians having contrasting trends in Europe

Aim We explored general habitat‐related explanations (niche breadth and niche position) to the contrasting status of two amphibian species that have largely overlapping ranges and habitats – the rare and declining crested newt (Triturus cristatus), and the more common smooth newt (Triturus vulgaris). These closely related and ecologically similar species provide an excellent opportunity to study those methodologically challenging hypotheses, and this is the first such study on amphibians. Location Denmark. Methods We derived multivariate habitat models from 27 characteristics of 210 ponds and their surroundings, and their occupation by newts. In addition to the model performance, niche breadths were compared using the mean beta diversity of amphibian communities in the presence of each newt species. Results For each newt species, the habitat models comprised three variables and correctly classified 74% of observations. Diverse invertebrate fauna (prey base) and shorter distances to other ponds inhabited by conspecifics were positive for both species, while the surrounding habitat (notably dry grasslands with forests) was important for the crested newt and the sediment type of the pond for the smooth newt only. Beta diversity of the amphibian communities of occupied ponds did not differ between the two newt species. Hence, in an area of frequent coexistence, habitat requirements of the species differed in key variables, not in the extent of specialization. Main conclusions Our study supported the niche position rather than the niche‐breadth hypothesis of rarity. We suggest that the rarity and/or continuing decline of the crested newt is related to the degradation of (semi)natural terrestrial habitats around suitable water bodies in Europe. Consequently, special restoration of such habitats has a high potential for the recovery of this rare species, while general pond management appeared more beneficial for the common smooth newt.     

Some notes on the ecology of a GermanBranchipus schaefferi population (Crustacea: Anostraca)

Habitat preference, seasonal occurrence, starvation resistance, hatching eggs ofBranchipus schaefferi, and effects of predation onB. schaefferi were studied.Branchipus was only present in turbid, unvegetated ponds and absent in ponds which contain higher aquatic vegetation and theSpirogyra sp. The first individuals ofB. schaefferi appeared in April when water temperature was 10 °C and the last adults in November at a water temperature of 3.5 °C. Up to 6 reproducing generations were observed during this period. Abundance ofB. schaefferi was higher in temporary ponds than in permanent ponds. Sex ratio was close to unity for most of the year. Body size ofB. schaefferi males and females was significantly positively correlated with pond volume. Without foodB. schaefferi could survive for 1.5 to 2 days at 20 °C and 4 to 5 days at 10 °C. Hatching success of eggs decreased when eggs were dried for 7 months. Freezing of eggs had no effect on hatching success. From] the predators tested,Chaoborus sp. larvae clearly selected smallB. schaefferi; one consumed approximately 6Branchipus d–1 at a density of 6 to 12 prey 1–1. The other predators, dragonfly larvae, and larvae and adults ofTriturus alpestris selected alternative prey types, for exampleTubifex sp. and ostracods.     

The effects of predation on the survival and size-distribution of estuarine fishes: an experimental approach

Synopsis The effect of southern flounder,Paralichthys lethostigma, predation on the survival and size-distribution of spot,Leiostomus xanthurus, was investigated using feeding experiments in outdoor tanks and estuarine ponds. In the outdoor tank experiments, southern flounder, 143 mm average standard length (SL), fed for 48 h on spot (25–30 mm SL), over a range of densities (4–20 m^–2). In these trials, flounder showed a Type II functional response to spot density. In the estuarine pond experiment, flounder density (2 or 4 flounders 70 m^–2) contributed significantly to spot mortality relative to predator-free controls. The effect of flounder density on spot mortality was non-linear; in the 4-flounder treatment the daily instantaneous mortality due to flounder (0.0177) was 3.5 times that in the 2-flounder treatment (0.0051). The total spot mortality rate in the 4-flounder treatment (0.028) was similar to that observed from published field observations. Flounder also altered the size distribution of spot relative to predator-free controls. Predation by flounder resulted in fewer intermediate-sized spot at the end of the experiment when compared to predator-free controls. Flounder also significantly reduced survival and mean length of two killifishes,Cyprinodon variegatus andFundulus heteroclitus, that invaded the pond. Flounder predation was a significant size-structuring force on the prey fish assemblage in the pond. Results from both the outdoor tank experiment and the pond experiment indicate that flounder may represent a significant source of mortality for juvenile estuarine fishes.