Mean Lifetime and First-Passage Time of the Enzyme Species Involved in an Enzyme Reaction. Application to Unstable Enzyme Systems

Taking as starting point the complete analysis of mean residence times in linear compartmental systems performed by Garcia-Meseguer et al. (Bull. Math. Biol. 65:279–308, 2003) as well as the fact that enzyme systems, in which the interconversions between the different enzyme species involved are of first or pseudofirst order, act as linear compartmental systems, we hereby carry out a complete analysis of the mean lifetime that the enzyme molecules spend as part of the enzyme species, forms, or groups involved in an enzyme reaction mechanism. The formulas to evaluate these times are given as a function of the individual rate constants and the initial concentrations of the involved species at the onset of the reaction. We apply the results to unstable enzyme systems and support the results by using a concrete example of such systems. The practicality of obtaining the mean times and their possible application in a kinetic data analysis is discussed.     

Phosphatidate Phosphatase—A Key Enzyme in Glycerolipid Biosynthesis. Studies on the Yeast Enzyme

Phosphatidate phosphatase is an important enzyme in glycerolipid biosynthesis, but difficult to purify. A purified preparation of N-ethylmaleimide-sensitive phosphatidate phosphatase from the yeast Saccharomyces cerevisiae was obtained by a five-step protocol, using chromatography on DE-53/DEAE FF, Affi-Gel Blue, hydroxyapatite, Mono-Q, and Superdex 200. A protease-deflcient yeast strain gave preparations similar to those of the wild-type strain. In exclusion chromatography, the enzyme activity of all preparations eluted at approximately the same position as albumin. However, the behavior on SDS/PAGE differed considerably among preparations, suggesting a multimeric subunit structure or degradation during purification. A 35-kDa and a 40-kDa protein band which coincided with activity were found in all preparations. Glycerol in the buffers could be excluded without rapid loss of enzyme activity, and Tris could be substituted for ammonium bicarbonate, while at least 0.6% sodium cholate in the buffers was essential.     

Diversification of SUMO-Activating Enzyme in Arabidopsis： Implications in SUMO Conjugation

Sumoylation is an essential posttranslational modification that participates in many biological processes including stress responses. However, little is known about the mechanisms that control Small Ubiquitin-like MOdifier （SUMO） conjugation in vivo. We have evaluated the regulatory role of the heterodimeric E1 activating enzyme, which catalyzes the first step in SUMO conjugation. We have established that the E1 large SAE2 and small SAE1 subunits are encoded by one and three genes, respectively, in the Arabidopsis genome. The three paralogs genes SAEla, SAElbl, and SAElb2 are the result of two independent duplication events. Since SAElbl and SAElb2 correspond to two identical cop- ies, only two E1 small subunit isoforms are present in vivo： SAEla and SAElb. The E1 heterodimer nuclear localization is modulated by the C-terminal tail of the SAE2 subunit. In vitro, SUMO conjugation rate is dependent on the SAE1 isoform contained in the E1 holoenzyme and our results suggest that downstream steps to SUMO-E1 thioester bond formation are affected. In vivo, SAEla isoform deletion in T-DNA insertion mutant plants conferred sumoylation defects upon abi- otic stress, consistent with a sumoylation defective phenotype. Our results support previous data pointing to a regula- tory role of the E1 activating enzyme during SUMO conjugation and provide a novel mechanism to control sumoylation in vivo by diversification of the E1 small subunit.     

Verteilung und Aktivität hydrolytischer Enzyme in Hypophysenadenomen

Zusammenfassung An 17 Hypophysenadenomen [12 Chromophobe (endokrin-inaktive), 5 Mischtypadenome (endokrin-aktive)] wurde das Verhalten und die Aktivität der hydrolytischen Enzyme -Galaktosidase, -Glucuronidase, -Glykosidase und Arylsulfatase mit histochemischen Methoden geprüft.Die Mischtypadenome zeigen insgesamt eine höhere Aktivität als die Chromophoben. Dabei reagieren -Galaktosidase und -Glykosidase am stärksten, -Glucuronidase etwas schwächer, während Arylsulfatase die niedrigste Aktivität zeigt. Die Befunde werden mit anderen enzymhistochemischen Untersuchungen an Hypophysenadenomen und tierexperimentellen Ergebnissen verglichen. Daraus folgt, daß wahrscheinlich zwischen der Aktivität der untersuchten lysosomalen Enzyme und der endokrinen Aktivität ein Zusammenhang besteht.

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Summary Behaviour and activity of the hydrolytic enzymes -galactosidase, -glucuronidase, -glycosidase and arylsulphatase are tested in 17 adenomas of the hypophysis (12 chromophobic, endocrine-inactive; 5 mixed cell adenomas, endocrine-active).Mixed cell adenomas show an altogether higher activity than chromophobic adenomas. -galactosidase and -glycosidase show the highest, -glucuronidase a slightly lower, and arylsulphatase the lowest activity. The findings are compared with other enzymhistochemical methods and results from animal experiments. The results of this comparison indicate that there is a correlation between the endocrine activity of the lysosomal enzymes in question.

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Der Deutschen Forschungsgemeinschaft danken wir für ihre Unterstützung.

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Fräulein Renate Kott, Fräulein Marianne Lehnen und Fräulein Edith Klasmeier danke ich für ihre technische Unterstützung.     

Enzyme or Electrode?

The process of dissimilatory metal reduction shapes our environment on a global scale by using minerals as terminal acceptors in a biological electron transport chain employed by bacteria under anaerobic conditions. In this issue of Structure, Edwards et?al. present the structure of an extracellular undecaheme cytochrome involved in the step of electron transfer to metal oxides.     

Enzyme specificity: “pseudopolymorphism” of lactate dehydrogenase in Drosophila melanogaster

An electrophoretic variant in the LDH (l-lactate:NAD oxidoreductase, E.C.1.1.1.27) of Drosophila melanogaster was observed on starch (or polyacrylamide) gels. This variant was found to exhibit an identical isozymic pattern (three isozymes with a decreasing staining density) on starch gel and map position as the Adh locus. On the other hand, anodal polyacrylamide gel electrophoresis in crude extracts has shown LDH to consist of nine bands and ADH of four bands. We have shown that ADH (Alcohol:NAD oxidoreductase, E.C.1.1.1.1) also oxidizes l(+)-lactate or d(–)-lactate with the NAD, while LDH oxidizes ethanol. By using various genetic and biochemical techniques, we have shown that the observed Ldh electrophoretic variant was not a real one and could be attributed to the presence of ADH. We have called this phenomenon pseudopolymorphism, and the problem of enzyme specificity has been examined. The appearance of a band in an assay using lactic acid as a substrate is not sufficient evidence for the presence of LDH. Hence, caution is called for before characterizing an electrophoretic band on a gel as being equivalent to the presence of a genetic locus. Out of the nine electrophoretic zones of activity observed on polyacrylamide gel (or out of the six previously observed) using crude extract, only two (one major and one minor) belong to LDH, as revealed by purified enzyme preparations. Furthermore, purified LDH exhibits activity in two bands on starch gel (out of three observed in crude extracts), which appear in different positions as compared with those of ADH. Finally, one band which responds to the presence of d(–)-lactate but not to l(+)-lactate has been revealed.     

Untersuchungen über das Vorkommen proteolytischer Enzyme in verschiedenen Fisch- und Molluskenorganen

Zusammenfassung Es wird über die Hydrolyse synthetischer Peptidsubstrate (Aminosäureester und -amide, Peptidester und acylierte Peptide) durch Organhomogenate von Fischen (Engraulis enchrasicholus, Mullus barbatus, Belone akus, Mugil auratus) und Mollusken (Rapana bezoar, Mytilus galloprovincialis) des Schwarzen Meeres berichtet.Die untersuchten Fischorgane (insbesondere Leber und Niere, ferner Appendices pyloricae, Pankreas und Blasengalle) hydrolysieren sowohl l-Leucinamid (LA) wie die verschiedenen Aminosäure-und Peptidester optimal im schwach alkalischen Milieu. Lediglich die Niere spaltet Acetyl-l-tyrosinäthylester (ATÄE) maximal im sauren Medium.Analoge Resultate werden mit den Mytilusorganen (Nieren, Mitteldarmdrüse, Kristallstiel, Gonaden) erhalten; jedoch wird neben ATÄE auch Glycyl-l-tyrosinäthylester sehr stark durch Niere primär esterolytisch gespalten. Im Kristallstiel sind außer einer geringen LA-Hydrolyse keine in vorliegender Untersuchung geprüften Peptidasen nachweisbar.In den Verdauungsdrüsen von Rapana bezoar konnten außer Exopeptidase-und Aminosäureesterasewirkungen (letztere mit Ausnahme der Speicheldrüsen im schwach sauren Milieu optimal wirksam) nur geringfügige (Leibleinsche Drüse, Speicheldrüse) bzw. keine meßbaren (Mitteldarmdrüse) Endopeptidase- (pepsin-, trypsin-und chymotrypsin-homospezifischen) Aktivitäten nachgewiesen werden.Die Leucinaminopeptidase-und Aminosäureesterase-Aktivitäten der Molluskenorgane sind vergleichsweise zu denen der Säugetierorgane nur schwach durch Effektoren (Metallionen und SH-Enzymsowie Esteraseinhibitoren) beeinflußbar.     

Carboanhydrase-Aktivität und Enzyme des Glykolatweges in der Blaualge Anacystis nidulans

Summary The blue-green alga Anacystis nidulans (strain L 1402-1) was grown in air (0.03 vol. % CO₂) and in 3.0 vol. % CO₂ at +35° C. Levels of carbonic anhydrase were 3-fold higher in air-grown cells than in CO₂-grown algae. CO₂ content during growth has no effect on activity of RuDP carboxylase. Activities of PEP carboxylase, malic enzyme and catalase were higher in CO₂-grown Anacystis cells. In air-grown cells higher activities of malate dehydrogenase, glycolate dehydrogenase, serine-pyruvate aminotransferase and aspartate--ketoglutarate aminotransferase were found. Levels of these enzymes are relatively low compared to those in green algae and higher plants.     

Occurrence of Two Types of Cystathionine β-Cleavage Enzyme in Bacillus subtilis

Production of extracellular polysaccharidases by Irpex lacteus Fr. was studied in different culture conditions.

The presence of fatty acids such as linolic, linolenic, erucic, palmitic acids etc. caused remarkably to increase the production of ceîlulase (filter paper disintegrating activity, FD), laminarinase and xylanase. On the contrary, fatty acids had not any special effect on the production of cellulolytic enzymes such as Avicelase and CMCase and of plant tissue macerating enzymes (MA).

When two kinds of carbon sources, e.g., cellulose powder and potato pulp were mixed together and used as an inducer, polysaccharidase production investigated, with the exception of CMCase, increased higher than when the two substances were used separately.     

Involvement of TNF-α Converting Enzyme in the Development of Psoriasis-Like Lesions in a Mouse Model

TNF-α plays a crucial role in psoriasis; therefore, TNF inhibition has become a gold standard for the treatment of psoriasis. TNF-α is processed from a membrane-bound form by TNF-α converting enzyme (TACE) to soluble form, which exerts a number of biological activities. EGF receptor (EGFR) ligands, including heparin-binding EGF-like growth factor (HB-EGF), amphiregulin and transforming growth factor (TGF)-α are also TACE substrates and are psoriasis-associated growth factors. Vascular endothelial growth factor (VEGF), one of the downstream molecules of EGFR and TNF signaling, plays a key role in angiogenesis for developing psoriasis. In the present study, to assess the possible role of TACE in the pathogenesis of psoriasis, we investigated the involvement of TACE in TPA-induced psoriasis-like lesions in K5.Stat3C mice, which represent a mouse model of psoriasis. In this mouse model, TNF-α, amphiregulin, HB-EGF and TGF-α were significantly up-regulated in the skin lesions, similar to human psoriasis. Treatment of K5.Stat3C mice with TNF-α or EGFR inhibitors attenuated the skin lesions, suggesting the roles of TACE substrates in psoriasis. Furthermore, the skin lesions of K5.Stat3C mice showed down-regulation of tissue inhibitor of metalloproteinase-3, an endogenous inhibitor of TACE, and an increase in soluble TNF-α. A TACE inhibitor abrogated EGFR ligand-dependent keratinocyte proliferation and VEGF production in vitro, suggesting that TACE was involved in both epidermal hyperplasia and angiogenesis during psoriasis development. These results strongly suggest that TACE contributes to the development of psoriatic lesions through releasing two kinds of psoriasis mediators, TNF-α and EGFR ligands. Therefore, TACE could be a potential therapeutic target for the treatment of psoriasis.     

Is There a Metabolic Requirement for Photorespiratory Enzyme Activities in Heterotrophic Tissues？

Photorespiration is an essential metabolic process in leaves that facilitates recovery of carbon lost by the oxygenase reaction of Rubisco and avoids the accumulation of the toxic product, 2-phosphoglycolate （2PG） of this reaction （Bauwe et al., 2012）. However, there is also evidence to suggest that photorespiration has a more complex role during normal growth than the mere detoxification of 2PG and the recovery of 3-phosphoglycerate （3PGA） （Bauwe et al., 2012）.     

Enzyme des Stärkeumsatzes in den Wurzelhaubenzellen von Zea mays L.

Summary In connection with the problem of the well-known stability of statolith starch, some enzymes of starch metabolism have been investigated qualitatively in the root cap cells of Zea mays L. No activity of granule-bound UDPG- and ADPG-transglucosylase (EC 2.4.1.21) could be found. In the soluble enzyme fraction of the root cap cells, on the other hand, activities of phosphorylase (EC 2.4.1.1), sucrose synthetase (EC 2.4.1.13), UDPG-pyrophosphorylase (EC 2.7.7.9), -Amylase (EC 3.2.11), Maltase (EC 3.2.1.20), and D-enzyme (EC 2.4.1.25) were clearly shown to be present. However, no measurable activities of ADPG-pyrophosphorylase, sucrose-6-phosphate-synthetase (EC 2.4.1.14) and UDPG-dehydrogenase (EC 1.1.1.22) could be found. It is concluded that the stability of statolith starch in the root cap cells is not caused by the lack of enzymes of starch metabolism, but perhaps by a dynamic equilibrium between the degradation and the synthesis of starch. The later could proceed by the activity of phosphorylase working in the direction of starch synthesis because of removal of the inorganic phosphate by phosphorylating mitochondria accumulating in the neighbourhood of the statolith amyloplasts.     

The Stopped-flow Method and Chemical Intermediates in Enzyme Reactions – A Personal Essay

My perspective does not deal directly with photosynthesis research. However, the methods evolved have played an important role in several areas of biochemistry and biophysics including photosynthesis. Improvements of rapid reaction methods, based upon the pioneering studies of Hamilton Hartridge and F.J.W. Roughton, and Glenn Millikan, required a detailed study of the hydraulics of small-bore tubes and jet mixers, taking into account, that economy of reactants was demanded by the sparcity of enzyme preparations in the 1930s. This Personal perspective recites the steps taken to minimize the volumes expended in rapid flow studies, together with the improvements in electronic technology of rapid and sensitive spectrophotometry of labile intermediates in enzyme reactions. Of the methods studied, continuous, accelerated and stopped flow, the latter was designed for the highest fluid economy and subsequently proved to be of wide use for studying biochemical kinetics. Advances in fast spectrophotometry of dilute solutions led to great improvements in Millikan's dual-wavelength system, both in speed of recording and decreases of background noise level, largely due to electronic stabilization of light sources and sensitive amplifiers. The application of these technologies to studies of hemoglobin, myoglobin and heme enzymes was, more recently, followed by studies of suspensions of organelles, cells, and tissues not only in vivo but also at low temperatures with cryoprotectants, leading to the use of flash activation in carbon monoxide inhibited heme enzymes. Laser technology allowed photosynthetic systems to be studied at cryotemperatures, leading to the development of electron tunneling theories for biological reactions (not discussed in this paper). All in all, the many fundamental developments of electronics, optics and hydraulics indicate how technology can respond effectively to the needs of biology in general, and photobiology in particular.     

Enzyme des Stärkeumsatzes in Bündelscheiden- und Palisadenchloroplasten von Zea mays

Summary Isolated chloroplasts from the bundle sheath cells show considerable activity of the ADPG- and UDPG-pyrophosphorylase (EC 2.7.7.9), ADPG- and UDPG-transglucosylase (EC 2.4.1.21), and the starch phosphorylase (EC 2.4.1.1). In chloroplasts of the palisade cells, on the other hand, only the UDPG-pyrophosphorylase is remarkably active.     

Immunohistochemical Analysis of DNA ‘mismatch-repair’ Enzyme Human Mut-S-Homologon-2 in Ovarian Carcinomas

The human Mut-S-Homologon-2 (hMSH-2) gene product is a member of a highly conserved family of proteins involved in postreplication mismatch repair. We have analysed hMSH-2 expression in normal ovarian tissue (n=15) and ovarian carcinomas (n=40). hMSH-2 protein was investigated immunohistochemically on frozen sections using a highly sensitive streptavidin–peroxidase technique and a specific mouse monoclonal antibody (clone FE11). A hMSH-2-immunoreactivity score (hMSH-2-IRS) for semiquantitative analysis of hMSH-2 expression is presented. In normal ovarian tissue, we only found weak nuclear immunoreactivity for hMSH-2 in 60%, while the remaining 40% were hMSH-2 negative (mean hMSH-2-IRS: 0.73; SD: ±0.70). All ovarian carcinomas analysed revealed moderate to strong nuclear immunoreactivity (mean hMSH-2-IRS: 8.05; SD: ±3.65). hMSH-2 staining was heterogeneous, with visual differences between individual tumour cells. Expression of hMSH-2 protein was consistently and strongly upregulated in tumour cells of ovarian carcinomas as compared to normal ovarian tissue. No statistically significant correlation in comparing the labelling patterns for hMSH-2 with the labelling patterns for Ki-67 (mean percentage of Ki-67 positive tumour cells: 25.88%; SD: ±18.43) was observed in ovarian carcinomas. Furthermore, no statistical significant correlations between hMSH-2-IRS and histological grading (p=0.47), histological type of carcinoma (p=0.706) or FIGO-classification (p=0.054) were found. Our findings indicate that (a) hMSH-2 is expressed in normal human ovarian tissue, (b) expression of hMSH-2 is increased in ovarian carcinomas, (c) expression of hMSH-2 may be of importance for the genetic stability of ovarian carcinomas in vivo, (d) hMSH-2 mutations may not cause microsatellite instability in ovarian carcinomas, (e) hMSH-2 may contribute to mechanisms responsible for resistance to anticancer drugs.