Coding sequence polymorphism in avian mitochondrial genomes reflects population histories

Nucleotide sequence diversity at mitochondrial protein-coding loci from 72 species of birds from different geographical regions was analysed in order to test the hypothesis that temperate zone species show population genetic effects of past glaciation. Temperate zone species showed reduced nucleotide diversity in comparison to tropical mainland species, suggesting that the latter have long-term effective population sizes due to population bottleneck effects during the most recent glaciation. This hypothesis was further supported by evidence of an unusually high estimated rate of population growth in species breeding in North America and wintering in the New World tropics (Nearctic migrants), consistent with population expansion after a bottleneck. Nearctic migrants also showed evidence of an abundance of rare nonsynonymous (amino acid-altering) polymorphisms, a pattern suggesting that slightly deleterious polymorphisms drifted to high frequencies during a bottleneck and are now being eliminated by selection. Because the shape of the North American land mass limited the area available for refugia during glaciation, the bottleneck effects are predicted to have been particularly strong in Nearctic migrants, and this prediction was supported. The reduced genetic diversity of Nearctic migrants provides an additional basis for concern for the survival of these species, which are threatened by loss of habitat in the winter range and by introduced disease.     

Perspectives on Palaearctic and Nearctic bird migration; comparisons and overview of life-history and ecology of migrant passerines

In this paper we compare ecological attributes of tropical migrant passerines from the Nearctic and western Palaearctic, focusing particularly on habitat association patterns during both breeding and wintering seasons. Three regions were compared: Europe, western and eastern North America. Breeding bird census data from 32 studies (each including at least four stages of forest succession) were used to assess the association patterns of breeding habitats among tropical migrants. For each species we calculated an index of habitat diversity and habitat preference.
Tropical migrants preferred earlier successional stages than other birds in Europe. The opposite was true in eastern North America. In eastern North America, tropical migrants tended to be associated with a smaller range of serai stages than other passerine species. In their winter quarters, Palaearctic migrants live primarily in open habitats, such as savannas, whereas eastern Nearctic migrants make more frequent use of evergreen forests. Migrants from western North America show the greatest match between breeding and wintering habitats.
We relate the results to the taxonomy and probable history of contemporary avifaunas and vegetation formations of the Old and New World. Taxonomically, tropical migrants from different parts of the Holarctic are less closely related to each other than residents and short-distance migrants. Tropical and temperate avifaunas are more closely related to each other in the New World than in the Old World. Conservation implications of the between-continent differences are briefly discussed.     

Post‐breeding population dynamics indicate upslope molt‐migration by Wilson's Warblers

Molt is an energetically costly process, and songbirds (Order Passeriformes) exhibit a diversity of strategies to maximize their survival and reproductive success while meeting the energetic demands of the annual prebasic molt. Nearctic‐Neotropic migrants in western North America commonly exhibit one of three strategies: (1) remain in breeding areas to molt, (2) migrate long distances to molt before continuing to wintering areas, or (3) migrate to wintering areas and then molt. Among species that molt in or near breeding areas, the nature of small‐scale movements to undergo molt remains largely unknown. We used banding data collected over a period of 27 yr and across an elevational gradient to examine the propensity of Wilson's Warblers (Cardellina pusilla) to molt and breed at the same or different locations in northern California and southern Oregon. We found that individual adult Wilson's Warblers were more likely to breed at lower elevations and molt at higher elevations, suggesting that some individuals move altitudinally after breeding to complete the definitive prebasic molt. Such altitudinal movements may be more common among Nearctic‐Neotropic migrants in western North America than previously thought.     

NOTES ON NORTHERN MIGRANTS OBSERVED INLAND IN BRITISH GUIANA

1. The scarcity of northern migrants in British Guiana and the South American tropics generally is commented on.
2. 40 species of migrants, exclusing rare vagrants, from North America are known to occur in British Guiana; 24 of these have been recorded from the Bartica district. In each case nearly half are waders.
3. The number of species found in the Bartica district of British Guiana is compared with the number recorded in a recent intensive study of an inland area near the Caribbean coast of northeastern Venezuela, where 12 of the 16 northern migrants noted were waders.
4. A list of migrants from North America observed at the tropical research station of the New York Zoological Society at Kartabo (Bartica district) is criticized.
5. Notes from the writer's own observations on inland occurrences in British Guiana of 19 migrants and one rare vagrant are given.
6. Notes on two other species, the Swallow-tailed Kite Elanoides forficatus (a resident race occurs), and the Black Swift Nephoecetes niger , whose winter range is unknown, are included.     

Biogeographic regions of North American mammals based on endemism

Since the 19th Century, two regions have been recognized for North American mammals, which overlap in Mexico. The Nearctic region corresponds to the northern areas and the Neotropical region corresponds to the southern ones. There are no recent regionalizations for these regions under the criterion of endemism. In the present study, we integrate two methods to regionalize North America, using species distribution models of mammals: endemicity analysis (EA) and parsimony analysis of endemicity (PAE). EA was used to obtain areas of endemism and PAE was used to hierarchize them. We found 76 consensus areas from 329 sets classified in 146 cladograms, and the strict consensus cladogram shows a basal polytomy with 14 areas and 16 clades. The final regionalization recognizes two regions (Nearctic and Neotropical) and a transition zone (Mexican Transition Zone), six subregions (Canadian, Alleghanian, Californian‐Rocky Mountain, Pacific Central America, Mexican Gulf‐Central America, and Central America), two dominions (Californian and Rocky Mountain), and 23 provinces. Our analysis show that North America is probably more complex than previously assumed. © 2013 The Linnean Society of London, Biological Journal of the Linnean Society, 2013, 110 , 485–499.     

Geographical variation in the 'bottom-up' control of diversity: fleas and their small mammalian hosts

Aim We searched for signs of the ‘bottom‐up’ diversity effect in the association between fleas (Siphonaptera) and their small mammalian hosts (Rodentia, Insectivora and Lagomorpha). We asked (1) whether a strong dependence of flea species richness on host species richness is characteristic for both Palaeoarctic and Nearctic realms; (2) if yes, whether the ratio of host species per flea species along the host diversity gradient is similar between the Palaeoarctic and Nearctic; and (3) whether factors other than host species richness (i.e. geographical position, climate and landscape) might better explain variation in flea species richness than host species richness. Location The study used previously published data on species richness of fleas and their small mammalian hosts from 26 Palaeoarctic and 19 Nearctic regions. Methods We regressed the number of flea species on the number of small mammal species across regions, separately for Palaeoarctic and Nearctic realms, using both non‐transformed data as well as data corrected for the confounding effects of host sampling effort and sampling area. To test whether flea species richness is determined by external factors unrelated to the host, we used stepwise multiple regressions of flea species richness against host species richness and parameters describing the geographical position, climate and relief of a region. Results When non‐transformed data were analysed, flea species richness was positively correlated with host species richness in both the Palaeoarctic and Nearctic, although the slopes of the two regressions differed significantly. After removal of the confounding effects of host sampling effort and sampling area, Palaeoarctic flea species richness remained strongly positively correlated with host species richness, whereas in the Nearctic, flea species richness appeared to be completely independent of host species richness. Results of the multiple regressions using corrected data demonstrated that in the Palaeoarctic, flea species richness was correlated with both the number of host species and the mean altitude of the region, whereas in the Nearctic, flea species richness only tended to be weakly correlated with latitude (however, this correlation turned out to be non‐significant after Bonferroni correction). Main conclusions We found evidence of bottom‐up control of flea diversity in the Palaeoarctic regions only, and not in the Nearctic. We explore several potential explanations for the different patterns observed in the two biogeographical realms, including differences in (1) levels of host specialization, (2) history of host–parasite associations and (3) landscape effects on flea diversification. We conclude that these factors combine to create different macroecological patterns in different biogeographical realms, and that diversity is not governed by the same forces everywhere.     

Diversity and Distributional Patterns of Neotropical Freshwater Copepods (Calanoida: Diaptomidae)

The distributional patterns and diversity of the diaptomid calanoid copepods were analysed to assess the faunistic affinity of North and South America with respect to Mexico and Central America. In the Neotropical region, the most speciose genera of Diaptomidae are Leptodiaptomus and Mastigodiaptomus. The former genus is a Nearctic form, and Mastigodiaptomus is Neotropical. Based on the current distribution of their diversity, it is probable that these genera radiated into Mexico and Central America from North America and the insular Caribbean, respectively. Arctodiaptomus dorsalis is a primarily Palaearctic taxon, it is widely distributed between North and Central America. This species probably radiated in the Americas as a Tethyan derivate. Prionodiaptomus is the only member of the highly diverse South American diaptomid fauna that has expanded beyond the subcontinent. Despite the high diversity present in South America, its influence in Mexico and Central America appears to be weak; this is probably a consequence of the geologically recent union of the two main subcontinental landmasses. Mexico shares 33% of its species with NA, and no species are shared between NA and SA. For the Diaptomidae, the Nearctic influence is strongest in Mexico. (© 2005 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

A New Fishfly Species (Megaloptera: Corydalidae: Neohermes Banks) Discovered from North America by a Systematic Revision,with Phylogenetic and Biogeographic Implications

The taxonomy of Megaloptera from the Nearctic region is fairly well known and their faunal diversity has been largely surveyed, even in relatively remote regions. However, the evolutionary history of Nearctic Megaloptera is still poorly known with phylogenetic and biogeographic studies lacking. In this paper, we report a new fishfly species of the endemic North American genus Neohermes Banks, 1908, increasing the total number known of species to six. This new species (Neohermes inexpectatus sp. nov.) is currently known to occur only in California (USA) and is apparently confined to the Northern Coastal Range. The new species resembles the three Neohermes species from eastern North America based on the relatively small body size and the presence of female gonostyli 9. However, our phylogenetic analysis using adult morphological data recovered the new species as the sister species to the remaining Neohermes, which includes two species from western North America and three from eastern North America. According to the present interspecific phylogeny of Neohermes, with reconstructed ancestral areas, the initial divergence within the genus was found to take place in western North America, with a subsequent eastward dispersal. This likely lead to the modern distribution of Neohermes in eastern North America with the closure of the Mid-Continental Seaway, which separated western and eastern North America in the Mid-Late Cretaceous (100–80 MYA) and finally disappeared at the end of the Cretaceous (70 MYA). The uplift of the Cordilleran System probably accounted for the divergence between the eastern and two western Neohermes species.     

Ecological and environmental factors related to variation in egg size of New World flycatchers

Geographical variation in egg size is well documented for several taxa, but remains insufficiently described for birds in spite of a well‐known latitudinal gradient in clutch size. Several hypotheses have been proposed to explain avian egg size variation; however, they were not tested on a continental scale. Egg size is a key component of reproductive investment that influences offspring fitness. It is thought to vary geographically as one of a set of correlated life‐history traits that are under selection from varying ecological conditions. We completed a comprehensive literature review and calculated egg sizes for the most widespread clade within tyrant flycatchers, describing for the first time the geographical variation in egg size on a continental scale. We examined the relative support for ecological and environmental variables in explaining egg size variation using multi‐model inference and linear mixed models controlled for phylogenetic autocorrelation among species. We tested five hypotheses and found that: larger eggs occur in colder sites, which is consistent with the embryonic temperature hypothesis; medium/long‐distance migrants had smaller eggs than resident species while short‐distance migrants had the largest eggs; neither species clutch size, nor species nest type, nor evapotranspiration seasonality influenced egg size. Avian egg size is larger in Austral and Neotropical America (ANA), where species are resident or short‐distance migrants, and smaller across the medium/long‐distance migrants of the Nearctic region. In addition, while clutch size increases towards higher northern latitudes and is almost invariable across ANA species, egg sizes vary largely across ANA sites, increasing with southern latitudes and higher elevations and being influenced by summer temperature. While the embryonic temperature hypothesis has been usually linked to parental nest attentiveness, we highlight that environmental temperatures also have strong effects in shaping investment in egg size.     

Phylogeography and the origins of range disjunctions in a north temperate fish,the pygmy whitefish (Prosopium coulterii), inferred from mitochondrial and nuclear DNA sequence analysis

Aim To investigate the degree of phylogeographical divergence within pygmy whitefish (Prosopium coulterii) and to test hypotheses concerning the origin of disjunct populations within North America. Location North America from western Alaska to Lake Superior. Methods Mitochondrial (ATPase subunit VI) and nuclear (ITS‐1, ITS‐2) DNA sequence variation was assessed across the species’ North American range to test for the existence of distinct phylogeographical groupings of pygmy whitefish associated with known glacial refugia. Coalescent simulations of the mitochondrial DNA (mtDNA) data were used to test hypotheses of population structure. Results This species is composed of two monophyletic mitochondrial clades across its North American range. The two mtDNA clades differed by an average 3.3% nucleotide sequence divergence. These clades were also distinguished by ITS‐2, but the relationships among lineages were not resolved by the ITS‐1 analysis. Coalescent analyses rejected the null hypothesis of the current disjunct distributions being a result of fragmentation of a single widespread ancestral lineage across a variety of effective population sizes and divergence times. Main conclusions The current range disjunctions of pygmy whitefish in North America probably resulted from isolation, genetic divergence, and selective dispersal from at least two major Pleistocene glacial refugia: Beringia and Cascadia. More recent isolation and dispersal from an upper Mississippi refugium is suggested by relationships within one of the clades and by distributional evidence from co‐distributed species. The Beringian and Cascadian refugia have played major roles in the zoogeography of Nearctic temperate aquatics, but the roles of smaller refugia appear more variable among other species.     

Effect of fuel deposition rate on departure fuel load of migratory songbirds during spring stopover along the northern coast of the Gulf of Mexico

Migrants are generally assumed to minimize their overall migration time by adjusting their departure fuel loads (DFL) in relation to anticipated and experienced fuel deposition rates (FDRs). We utilized a 21‐yr long migration banding station dataset to examine the relationship between FDR and DFL during spring migration in six Nearctic‐Neotropical migratory songbird species during stopover along the northern coast of the Gulf of Mexico (GOM) following trans‐gulf flight. Estimates of fuel stores, stopover durations, and FDRs from our long term migration data set were combined to determine DFL. We expected and found that migrants across all six species adjust their DFL to the rate at which they deposit fuel reserves. This robust finding suggests that songbird migrants are sensitive to time constraints during spring passage presumably to fine‐tune their stopover schedule in relation to experienced and anticipated habitat quality. Two of the species studied showed an effect of age on the FDR–DFL relationship: one was consistent with the expectation that older birds would be less sensitive to changes in FDR, while the second was contrary to our expectations and likely suggesting an age‐dependent response to habitat quality. We found sex‐dependent differences consistent with male DFL being more sensitive to FDR in only two of six species studied, and argue that both males and females are time constrained during spring passage in relation to arrival at breeding destinations. The positive relationship between FDR and DFL among all species and for age and sex groups in some species reflects a migration strategy sensitive to time.     

Holding steady: Little change in intensity or timing of bird migration over the Gulf of Mexico

Quantifying the timing and intensity of migratory movements is imperative for understanding impacts of changing landscapes and climates on migratory bird populations. Billions of birds migrate in the Western Hemisphere, but accurately estimating the population size of one migratory species, let alone hundreds, presents numerous obstacles. Here, we quantify the timing, intensity, and distribution of bird migration through one of the largest migration corridors in the Western Hemisphere, the Gulf of Mexico (the Gulf). We further assess whether there have been changes in migration timing or intensity through the Gulf. To achieve this, we integrate citizen science (eBird) observations with 21 years of weather surveillance radar data (1995–2015). We predicted no change in migration timing and a decline in migration intensity across the time series. We estimate that an average of 2.1 billion birds pass through this region each spring en route to Nearctic breeding grounds. Annually, half of these individuals pass through the region in just 18 days, between April 19 and May 7. The western region of the Gulf showed a mean rate of passage 5.4 times higher than the central and eastern regions. We did not detect an overall change in the annual numbers of migrants (2007–2015) or the annual timing of peak migration (1995–2015). However, we found that the earliest seasonal movements through the region occurred significantly earlier over time (1.6 days decade^?1). Additionally, body mass and migration distance explained the magnitude of phenological changes, with the most rapid advances occurring with an assemblage of larger‐bodied shorter‐distance migrants. Our results provide baseline information that can be used to advance our understanding of the developing implications of climate change, urbanization, and energy development for migratory bird populations in North America.     

Foraging behavior of migrant warblers in mixed‐species flocks in Venezuelan shade coffee: interspecific differences,tree species selection,and effects of drought

Shade coffee has been identified as an important habitat for Nearctic‐Neotropical migrants during the non‐breeding season, including species of conservation concern such as Cerulean Warblers (Setophaga cerulea). To better understand habitat features important for migrants in shade coffee, we studied the foraging behavior of migrants in mixed‐species flocks at six shade‐coffee farms in the Cordillera de Merida, Venezuela, in 2008–2009 and the El Niño drought year of 2009–2010. We examined interspecific differences in foraging behavior and tree species selection of three foliage‐gleaning migrants, Blackburnian (Setophaga fusca), Cerulean, and Tennessee (Oreothlypis peregrina) warblers, and aerial‐foraging American Redstarts (Setophaga ruticilla). For morphologically similar Blackburnian and Cerulean warblers, we also examined factors influencing foraging rates (attack and movement rates), capture of large prey, and maneuver/substrate type. We found that aerial‐foraging American Redstarts foraged lower, used more aerial maneuvers, showed no tree species selection, and were less likely to forage in flocks than foliage‐gleaners. Although foraging rates were similar for Blackburnian and Cerulean warblers, the three foliage‐gleaners differed in foraging height and use of maneuvers. Cerulean Warblers foraged lower than the other two species, whereas Blackburnian Warblers used the greatest proportion of woody gleans. All three foliage‐gleaners selected Inga spp. (a commonly planted shade tree in shade‐coffee farms) for foraging, and Blackburnian and Cerulean warblers captured a greater proportion of large prey in Inga spp. than in other tree species. During the drought year, Blackburnian and Cerulean warblers captured half as many large prey and used a greater proportion of woody‐gleans. We found that interactions among behavioral, floristic, and environmental drivers influenced the foraging behavior of migrants wintering in shade coffee. Our results support those of previous studies suggesting that migrants partition resources behaviorally during the non‐breeding season, that foliage‐gleaners may benefit from the presence of shade trees, especially Inga spp., in agroforestry systems, and that drought may influence the foraging behavior of foliage‐gleaning migrants, presumably due to reduced prey availability.     

Molecular phylogeny of Cryptocercus wood-roaches based on mitochondrial COII and 16S sequences, and chromosome numbers in Palearctic representatives

Woodroaches of the genus Cryptocercus are subsocial and xylophagous cockroaches, distributed in North America and Asia. Studies on male chromosome number in Nearctic species have shown that diploid numbers vary from 2n=37 to 2n=47; numbers from Palearctic species were heretofore unknown. Two hypotheses have been proposed to explain the varying number of chromosomes among Nearctic species: the serial reduction hypothesis, and the parallel scenario. We performed phylogenetic analyses of the COII gene in these species and found evidence for the topology (47(45(43(39,37), which is congruent with the serial reduction hypothesis. We also determined chromosome numbers for the first time in Palearctic species, and found Cryptocercus primarius and Cryptocercus relictus to have relatively low chromosome numbers (2n=17-21) compared to their Nearctic relatives. Finally, our study determined the phylogenetic position of Cryptocercus primarius among other Asian taxa.     

Wing pattern evolution and the origins of mimicry among North American admiral butterflies (Nymphalidae: Limenitis)

The evolution of wing pattern diversity in butterflies has emerged as a model system for understanding the origins and maintenance of adaptive phenotypic novelty. Admiral butterflies (genus Limenitis) are an attractive system for studying wing pattern diversity because mimicry is common among the North American species and hybrid zones occur wherever mimetic and non-mimetic wing pattern races meet. However, the utility of this system has been limited because the evolutionary relationships among these butterflies remain unclear. Here I present a robust species-level phylogeny of Limenitis based on 1911 bp of two mitochondrial genes (COI and COII) and 904 bp of EF1-alpha for all five of the Nearctic species/wing pattern races, the majority of the Palearctic species, and three outgroup genera; Athyma, Moduza (Limenitidini), and Neptis (Limenitidinae: Neptini). Maximum-likelihood and Bayesian analyses indicate that the North American species are a well-supported, monophyletic lineage that is most closely related to the widespread, Palearctic, Poplar admiral (L. populi). Within North America, the Viceroy (L. archippus) is the basal lineage while the relationships among the remaining species are not well resolved. A combined maximum-likelihood analysis, however, indicates that the two western North America species (L. lorquini and L. weidemeyerii) are sister taxa and closely related to the wing pattern subspecies of the polytypic Limenitis arthemis species complex. These results are consistent with (1) an ancestral host-shift to Salicaceae by the common ancestor of the Poplar admiral and the Nearctic admiral lineage, (2) a single colonization of the Nearctic, and (3) a subsequent radiation of the North American forms leading to at least three independent origins of mimicry.     

Disjunctive distribution of the basal genus Aplomerus (Hymenoptera: Ichneumonidae: Xoridinae) in East Asia and North America,with a new species from Japan

The first Japanese representative of the predominantly Nearctic genus Aplomerus Provancher, A. japonicus sp. nov., is described. This species can easily be distinguished from the other species by the black body. Morphologically this species resembles A. lineatulus (Say) from eastern North America but is separable by the sculpture of the propodeum and third metasomal tergite. The discovery of this species demonstrates a disjunctive distribution of the genus Aplomerus in East Asia and North America. Notes on habitat and adult behavior are also given.     

Comparison of autumn and spring migration strategies of Neotropical migratory landbirds in northeast Belize

ABSTRACT Migration represents one of the most vulnerable stages of a migrant's life cycle, but the strategies and stopover sites used by Neotropical migrants in Central America are not well known. We carried out constant‐effort mist netting and conducted censuses along transects during one autumn (2007) and one spring (2008) migration in northeast Belize. We recorded more landbird migrant species in autumn (63) than in spring (54), and spring abundance was >25% lower for 88% of transient species. These differences in presence and abundance indicate that routes and stopover strategies vary between seasons and species. In autumn, fuel loads, calculated as any increase in mass above lean body mass (LBM), were generally small (mean = 5.9% LBM and 10.1% LBM for wintering and transient species, respectively) and fuel deposition rates and minimum stopover durations suggest that some individuals replenished energy reserves in our study area. Variation in autumn fuel loads meant that some individuals had reserves sufficient for flights >1000 km. Fuel loads were larger in spring for 16 of 17 species, and the mean spring fuel load for transient species (32.5% LBM) was sufficient for a flight from northeast Belize to North America without refueling. The similarity in spring passage times between northeast Belize and the Gulf Coast of the United States also suggests that energy reserves were not replenished in northeast Belize prior to crossing the Gulf of Mexico. We hypothesize that sufficient energy reserves are accumulated during spring stopovers in northern South America or elsewhere in Mesoamerica to allow migrants to fly directly to North America without refueling.     

Deconstructing the eradication of new world screwworm in North America: retrospective analysis and climate warming effects

Before its eradication from North America, the subtropical‐tropical new world screwworm fly Cochliomyia hominivorax (Coquerel) invaded southwestern temperate areas of the U.S.A., where it caused myiasis in wildlife and livestock. Outbreaks of the fly occurred during years when adult migrants were carried northward on North American monsoon winds from the northern areas of Mexico and south Texas. We deconstruct, retrospectively, the biology and the effect of weather on the eradication of the fly in North America. Screwworm was found to be an ideal candidate for eradication using the sterile insect technique (SIT) because females mate only once, whereas males are polygynous, and, although it has a high reproductive potential, field population growth rates are low in tropical areas. In northern areas, eradication was enhanced by cool‐cold weather, whereas eradication in tropical Mexico and Central America is explained by the SIT. Despite low average efficacy of SIT releases (approximately 1.7%), the added pressure of massive SIT releases reduced intrinsically low fly populations, leading to mate‐limited extinction. Non‐autochthonous cases of myiasis occur in North America and, if the fly reestablishes, climate warming by 2045–2055 will expand the area of favourability and increase the frequency and severity of outbreaks.     

The noncosmopolitanism paradigm of freshwater zooplankton: insights from the global phylogeography of the predatory cladoceran Polyphemus pediculus (Linnaeus, 1761) (Crustacea,Onychopoda)

A major question in our understanding of eukaryotic biodiversity is whether small bodied taxa have cosmopolitan distributions or consist of geographically localized cryptic taxa. Here, we explore the global phylogeography of the freshwater cladoceran Polyphemus pediculus (Linnaeus, 1761) (Crustacea, Onychopoda) using two mitochondrial genes, cytochrome c oxidase subunit I and 16s ribosomal RNA, and one nuclear marker, 18s ribosomal RNA. The results of neighbour‐joining and Bayesian phylogenetic analyses reveal an exceptionally pronounced genetic structure at both inter‐ and intra‐continental scales. The presence of well‐supported, deeply divergent phylogroups across the Holarctic suggests that P. pediculus represents an assemblage of at least nine, largely allopatric cryptic species. Interestingly, all phylogenetic analyses support the reciprocal paraphyly of Nearctic and Palaearctic clades. Bayesian inference of ancestral distributions suggests that P. pediculus originated in North America or East Asia and that European lineages of Polyphemus were established by subsequent intercontinental dispersal events from North America. Japan and the Russian Far East harbour exceptionally high levels of genetic diversity at both regional and local scales. In contrast, little genetic subdivision is apparent across the formerly glaciated regions of Europe and North America, areas that historical demographic analyses suggest that were recolonized just 5500–24 000 years ago.     

Temporal changes in abundance–occupancy relationships over 40 years

1. Abundance–occupancy (A–O) relationships are widely documented for many organismal groups and regions, and have been used to gain an understanding of regional population and community trends. Monitoring changes in abundance and occupancy over time may be what is required to document changes in conservation status and needs for some species, communities, or areas.
2. We hypothesize that if there is a higher proportion of declining species in one group of species compared with another (e.g., migratory species vs. permanent residents), then a consequence of that difference will be vastly different abundance–occupancy relationships. If this difference persists through time, then the resulting A–O relationships between the groups will continue to diverge.
3. For neotropical migrants, short‐distance migrants, and permanent resident birds of North America, we assess the numbers of declining species over 1969–2009. We further test for differences in the A–O relationship across these three groups, and in rates of change in abundance and occupancy separately.
4. We find significant differences in numbers of declining species across the migratory groups, a significant decline in the A–O relationship for permanent residents, a significant increase for Neotropical migrants, and a nonsignificant decline for short‐distance migrants over the 40 years. Further, abundances are not changing at different rates but occupancies are consistently greater over time for neotropical migrants versus permanent residents, likely driving the changes in A–O relationships observed.
5. In these analyses, we documented changing A–O trends for different groups of species, over a relatively long time period for ecological studies, one of only a few studies to examine A–O relationships over time. Further, we have shown that a temporally unvarying abundance–occupancy relationship is not universal, and we posit that variability in A–O relationships is due to human impacts on habitats, coupled with variation in species' abilities to respond to human impacts.