Classification tree and minimum-volume ellipsoid analyses of the distribution of ponderosa pine in the western USA

Aim Ponderosa pine (Pinus ponderosa Douglas ex Lawson & C. Lawson) is an economically and ecologically important conifer that has a wide geographic range in the western USA, but is mostly absent from the geographic centre of its distribution – the Great Basin and adjoining mountain ranges. Much of its modern range was achieved by migration of geographically distinct Sierra Nevada (P. ponderosa var. ponderosa) and Rocky Mountain (P. ponderosa var. scopulorum) varieties in the last 10,000 years. Previous research has confirmed genetic differences between the two varieties, and measurable genetic exchange occurs where their ranges now overlap in western Montana. A variety of approaches in bioclimatic modelling is required to explore the ecological differences between these varieties and their implications for historical biogeography and impending changes in western landscapes. Location Western USA. Methods We used a classification tree analysis and a minimum‐volume ellipsoid as models to explain the broad patterns of distribution of ponderosa pine in modern environments using climatic and edaphic variables. Most biogeographical modelling assumes that the target group represents a single, ecologically uniform taxonomic population. Classification tree analysis does not require this assumption because it allows the creation of pathways that predict multiple positive and negative outcomes. Thus, classification tree analysis can be used to test the ecological uniformity of the species. In addition, a multidimensional ellipsoid was constructed to describe the niche of each variety of ponderosa pine, and distances from the niche were calculated and mapped on a 4‐km grid for each ecological variable. Results The resulting classification tree identified three dominant pathways predicting ponderosa pine presence. Two of these three pathways correspond roughly to the distribution of var. ponderosa, and the third pathway generally corresponds to the distribution of var. scopulorum. The classification tree and minimum‐volume ellipsoid model show that both varieties have very similar temperature limitations, although var. ponderosa is more limited by the temperature extremes of the continental interior. The precipitation limitations of the two varieties are seasonally different, with var. ponderosa requiring significant winter moisture and var. scopulorum requiring significant summer moisture. Great Basin mountain ranges are too cold at higher elevations to support either variety of ponderosa pine, and at lower elevations are too dry in summer for var. scopulorum and too dry in winter for var. ponderosa. Main conclusions The classification tree analysis indicates that var. ponderosa is ecologically as well as genetically distinct from var. scopulorum. Ecological differences may maintain genetic separation in spite of a limited zone of introgression between the two varieties in western Montana. Two hypotheses about past and future movements of ponderosa pine emerge from our analyses. The first hypothesis is that, during the last glacial period, colder and/or drier summers truncated most of the range of var. scopulorum in the central Rockies, but had less dramatic effects on the more maritime and winter‐wet distribution of var. ponderosa. The second hypothesis is that, all other factors held constant, increasing summer temperatures in the future should produce changes in the distribution of var. scopulorum that are likely to involve range expansions in the central Rockies with the warming of mountain ranges currently too cold but sufficiently wet in summer for var. scopulorum. Finally, our results underscore the growing need to focus on genotypes in biogeographical modelling and ecological forecasting.     

GENETIC VARIATION IN THE PONDEROSAE OF THE SOUTHWEST

Ninety-five seedling populations of southwestern ponderosa pine (Pinus ponderosa var. scopulorum) along with single populations of Pinus engelmannii and Pinus arizonica were compared in four environmentally disparate common gardens. Differentiation among ponderosa pine populations was detected for a diverse assortment of variables that included patterns of shoot elongation, measures of growth potential, winter and spring freezing damage, and leaf characteristics. Multiple regression models accounted for as much as 85% of the variance among populations and described complex clines that were dominated by elevational and latitudinal effects. Although P. ponderosa, P. arizonica, and P. engelmannii were readily differentiated, the performance of progenies from one population suggested introgression primarily involving P. ponderosa and P. arizonica but also implicating P. engelmannii.     

Genetic analysis of ecological relevant morphological variability in Plantago lanceolata L.

Summary Morphological variability was analysed in an F₂-generation derived from crosses between two ecotypes of Plantago lanceolata L. Six allozyme loci, localised in five linkage groups, were used as markers. For two marker loci, Got-2 and Gpi-1, segregations did not fit monogenic ratios. In the linkage groups to which these two loci belonged, male sterility genes appeared to be present. In these crosses, male sterility (type 3, as described by Van Damme 1983) may be determined by two recessive loci located in the linkage groups of Got-2 and of Gpi-1. Many correlations of morphological and life history characters with allozyme markers were observed. The quantitative trait loci did not appear to be concentrated in major gene complexes. Often many loci were involved, sometimes with effects opposite to those expected from the population values. Main effects of the linkage groups appeared to be more important than interaction effects in determining variability. It also appeared that there is a positive correlation between the number of heterozygous allozyme loci and generative growth.Grassland Species Research Group Publication No. 115     

Ethylene production by different age class ponderosa and Jeffery pine needles as related to ozone exposure and visible injury

Summary Ethylene produced by different needle age classes representing natural populations of two ponderosa pine varieties [Pinus ponderosa var. arizonica (Engelm.) Shaw and var. ponderosa Dougl. ex Laws.] and Jeffery pine (Pinus jeffreyi Grev. and Balf.) was characterized using mercuric perchlorate traps. All populations contained individual trees which were either symptomatic or asymptomatic with respect to visible ozone injury. Ethylene production by different needle age classes was also characterized in P. ponderosa var. ponderosa seedlings grown in open top ozone fumigation chambers. Older age class needles produce significantly (P>0.05) more ethylene than younger age class needles. Needles of both P. ponderosa var. ponderosa and P. jeffreyi exhibiting ozone injury in the field produced significantly (P>0.05) higher levels of ethylene than asymptomatic conspecific trees. Seedlings exposed to the highest level of ozone in the fumigation study produced the highest levels of ethylene, followed by fumigation with medium and low ozone concentrations and carbon filtered air. These data indicate that the measurement of ethylene in conifer needles, as a measure of stress, needs to be calibrated for needle age class. It also suggests that the sensitivity of a tree to ozone injury may be regulated by the inherent ability of the individual to produce ethylene.     

Inheritance and mapping of embryo sac abortion in hybrid between Indica and Japonica rice (Oryza sativa L.)

A doubled haploid (DH) population derived from anther culture of F₁’s between an Indica var. Zhai-Ye-Qing 8 and a Japonica var. Jing-Xi17 as well as two backcross populations derived from this DH population were used to investigate inheritance of the embryo sac abortion at early megagametogenesis occurring in Indica/Japonica rice crosses. Two major loci, dominant and complementaryesa-1 andesa-2, located on chromosomes 6 and 12 respectively, were detected. Genetic analysis indicated that embryo sac fertility is mainly regulated by the gametophytic genotype at these two loci.     

EXPERIMENTAL STUDIES OF PONDEROSA PINE. II. QUANTITATIVE GENETICS OF MORPHOLOGICAL TRAITS

We studied fourteen morphological attributes of 511 seedling stage progeny involving crosses between Pinus ponderosa ponderosa parents as well as intervarietal crosses of P. p. ponderosa × P. p. scopulorum. Intravarietal progeny were distinctly differentiated genetically from intervarietal sibships in seven of the fourteen characters examined. The patterns of differentiation observed strongly suggest a syndrome of selective responses to increased water stress in the progeny with a scopulorum parent and for comparatively more rapid, columnar growth in the progeny of the intravariety crosses which involved only P. p. ponderosa parents. These differences are consistent with known ecological distinctions between the habitats of the two varieties. Narrow-sense heritability estimates, obtained from half-sib progeny analysis, indicated that considerable levels of additive genetic variance remain present in several traits. We could detect no relationship between the amount of additive genetic variance present for a particular character and its presumed relevance to fitness.     

High variability and disomic segregation of microsatellites in the octoploid Fragaria virginiana Mill. (Rosaceae)

The objectives of the present study were to develop microsatellite markers for the wild strawberry, Fragaria virginiana, to evaluate segregation patterns of microsatellite alleles in this octoploid species, and assess genetic variability at microsatellite loci in a wild population. A genomic library was screened for microsatellite repeats and several PCR primers were designed and tested. We also tested the use of heterologous primers and found that F. virginiana primers amplified products in cultivated strawberry, Fragaria × ananassa Duch. and Fragaria chiloensis. Similarly, microsatellite loci developed from cultivated strawberry also successfully amplified F. virginiana loci. We investigated four microsatellite loci in detail, three developed from F. virginiana and one from cultivated strawberry. A survey of 100 individuals from a population of F. virginiana in Pennsylvania demonstrated high heterozygosities (H_e or gene diversity ranged from 0.80 to 0.88 per locus) and allelic diversity (12–17 alleles per locus), but individual plants had no more than two alleles per locus. Segregation patterns in parents and progeny of two controlled crosses at these four loci were consistent with disomic Mendelian inheritance. Together these findings suggest that the genome of F. virginiana is "highly diploidized" and at least a subset of microsatellite loci can be treated as codominant, diploid markers. Significant heterozygote deficiencies were found at three of the four loci for hermaphroditic individuals but for only one locus among females in this gynodioecious species.Communicated by J. Dvorak     

Isolation of 23 polymorphic microsatellite loci in the Neotropical palm Oenocarpus bataua Martius (Arecaceae)

We report the isolation of 23 microsatellite loci obtained from a (GA)_n‐enriched genomic library of Oenocarpus bataua var. bataua. The average number of alleles per locus, the mean observed and expected heterozygosities for these microsatellite loci revealed a high level of variability. The transferability of the developed markers to other Oenocarpus species and other genera within the Euterpeae tribe was high, except for the Hyospathe genus.     

CYTOGENETIC STUDIES IN CLARKIA,SECTION PRIMIGENIA. II. A CYTOLOGICAL SURVEY OF CLARKIA ARCUATA AND CLARKIA LASSENENSIS

Clarkia arcuata and C. lassenensis are the 2 members of the subsection Flexicaules. Although closely related morphologically, they show very different patterns of chromosomal variability in nature. About 25% of the plants grown from wild seed of C. arcuata, a predominantly cross-pollinating species, were heterozygous for 1 or 2 translocations; such heterozygotes were found in 5 of the 9 populations sampled. An analysis of the chromosome pairing in intraspecific crosses indicated that at least 5 different translocations giving a ring of 4 with the “standard” strain, 2 giving a ring of 6, and 2 giving a ring of 8 are present in nature. No arrangement was found with widespread distribution, and it is impossible to say at present what might be the primitive arrangement of this species. One population was found to contain an inversion, a rearrangement which is very rare in Clarkia at the intraspecific level. In C. lassenensis, a predominantly self-pollinating species, only 6% (3 plants) of a sample of 53 were translocation heterozygotes, and these heterozygotes were found in only 2 of 13 populations. Intraspecific crosses indicated that one chromosome arrangement, the “standard,” was present throughout the species range.     

EVOLUTIONARY GENETICS OF OVIPOSITION PREFERENCE IN SWALLOWTAIL BUTTERFLIES

Models of the evolution of host shifts and speciation in phytophagous insects are often built upon the assumption that host selection is under simple genetic control, perhaps even a single locus. The genetic basis for differences in host-plant preference by ovipositing insects was investigated using two closely related species of swallowtail butterfly, Papilio oregonius and P. zelicaon, which differ in the plant families on which females oviposit. Both species had been shown previously to vary within populations in host selection. A combination of analyses using reciprocal interspecific crosses and isofemale strains within populations indicated that oviposition preference in these species is determined significantly by one or more loci on the X chromosome, which female Lepidoptera inherit only paternally. Hence, preferences in hybrid females tended toward the paternal species. This is the first insect group for which partial control of oviposition preference has been localized onto a particular chromosome. In addition, one or more loci on another chromosome(s) appear to contribute to preference, as indicated by the partially intermediate preferences of some hybrid crosses. The overall differences in preference in the reciprocal interspecific hybrids were restricted to differences in the distribution of eggs laid among the local host plants of these two Papilio species; the reciprocal crosses did not differ in the small percentage of eggs laid on a novel potential host species. The variation in host selection found among the isofemale strains reinforces earlier results for these strains, indicating that there is genetic variation in host selection within these populations. Overall, the results indicate that the evolution of oviposition preference in these species involves genetic changes at two or more chromosomes with the X chromosome playing an important role in determining preference.     

INTERSPECIFIC CROSSES IN KALMIA

Interspecific crosses among Kalmia species are reported for the first time. All possible crosses between K. angustifolia, K. cuneata, K. latifolia, K. hirsuta, K. polifolia var. rosmarinifolia and K. p. var. microphylla were attempted. Several crosses yielded no hybrids, many produced albino or yellow-green inviable seedlings, and six combinations produced at least a few seedlings with near-normal growth habit. Stylar inhibition of pollen tube growth prevented some species from hybridizing; reciprocal differences in crossability and pollen tube growth were noted. Kalmia species are highly heterozygous, but no evidence was found within a species for geographic variation of combining ability except for the two varieties of K. polifolia which had different crossing patterns with the other species. The anthocyaninless form of K. angustifolia, in contrast to the normal, has unique combining ability with K. latifolia. No genetic evidence was found to support the placement of K. hirsuta in another genus (Kalmiella) or to designate K. angustifolia var. caroliniana as a distinct species. Use of all the species to breed improved ornamentals is limited by genetic barriers and sterility of F₁ hybrids.     

Enzyme and colour variation in the hoplonemertean Tetrastemma nigrifrons from the Sea of Japan

Five sympatric colour varieties of the hoplonemertean Tetrastemma nigrifrons (var. pallidum, var. bicolor, var. purpureum, var. punctata, var. albino) were found in Vostok Bay (the Sea of Japan). The taxonomic status of the varieties, some of which have been known for almost a century, was uncertain. Starch gel electrophoresis was used to compare allele frequencies of these varieties at 19 isozyme loci. Neither fixed allelic differences nor statistically significant differences in allele frequencies between different colour varieties was revealed. It was concluded therefore that all the colour varieties studied are conspecific. As estimated from the electrophoretic screening of 24 isozyme loci, the species is highly variable at the molecular level. It has high mean values of observed and expected heterozygosity estimates, H _o =0.313 ± 0.049 and H _e =0.323 ± 0.050, and is one of the most variable species among invertebrates.     

Duplicated chromosome segments in maize (Zea mays L.): further evidence from hexokinase isozymes

Summary The genetic control of hexokinase isozymes (ATP: d-hexose-6-phosphotransferase, E.C. 2.7.7.1, HEX) in maize (Zea mays L.) was studied by starch gel electrophoresis. Genetic analysis of a large number of inbred lines and crosses indicates that the major isozymes observed are encoded by two nuclear loci, designated Hex1 and Hex2. Five active allozymes and one null variant are associated with Hex1, while Hex2 has nine active alleles in addition to a null variant. Alleles at both loci govern the presence of single bands, with no intragenic or intergenic heteromers visible, suggesting that maize HEX's are active as monomers. Organelle preparations demonstrate that the products of both loci are cytosolic. All alleles, including the nulls, segregate normally in crosses. Vigorous and fertile plants were synthesized that were homozygous for null alleles at both loci, suggesting that other hexosephosphorylating enzymes exist in maize that are undetected with our assay conditions. Linkage analyses and crosses with B-A translocation stocks place Hex1 on the short arm of chromosome 3, 27 centimorgans from Pgd2 (phosphogluconate dehydrogenase) and Hex2 on the long arm of chromosome 6, approximately 45 centimorgans from Pgd1. It is suggested that the parallel linkages among these two pairs of duplicated genes reflects an evolutionary history involving chromosome segment duplication or polyploidy.Paper No. 10170 of the Journal Series of the North Carolina Agricultural Research Service, Raleigh, NC     

EXPERIMENTAL STUDIES OF PONDEROSA PINE. III. DIFFERENCES IN PHOTOSYNTHESIS,STOMATAL CONDUCTANCE,AND WATER-USE EFFICIENCY BETWEEN TWO GENETIC LINES

As part of an intensive study of heritable differences among the progeny of Pinus ponderosa parents from two contrasting habitats (coastal vs. interior, continental), we examined the potential for differences in photosynthesis rate, stomatal conductance, and photosynthetic water-use efficiency. Plants from a cross between two coastal parents (ponderosa × ponderosa) exhibited lower photosynthetic water-use efficiencies, relative to plants from a coastal × interior cross (ponderosa × scopulorum). The lower water-use efficiencies in the ponderosa × ponderosa plants were evident as a lower ratio of external to intercellular CO₂ concentrations and higher stomatal conductances at any given rate of photosynthesis. The ponderosa × scopulorum plants exhibited lower stomatal conductances over a range of leaf-to-air water vapor concentration differences, which was partially explained by lower stomatal densities. The ponderosa × scopulorum plants also exhibited lower maximum photosynthesis rates and lower needle nitrogen concentrations. Taken together, the results suggest that in adapting to drier habitats, P. ponderosa has acquired improved water-use efficiencies and lower transpiration rates, but at the expense of reduced maximum photosynthesis rates.     

GENETIC VARIATION IN ALETES ACAULIS AND ITS RELATIVE,THE NARROW ENDEMIC A. HUMILIS (APIACEAE)

We compared the organization of genetic variability in Aletes humilis, a species restricted to seven populations in north-central Colorado, with A. acaulis, a closely related widespread species. Genetic variability was scored at 11 electrophoretically detectable protein loci. Nine of these loci were polymorphic (i.e., P > 0.95) in both taxa, and were used for interpopulation and interspecific comparisons. Levels of genetic variability and patterns of organization of this variability are very comparable in both species. In contrast to many other narrow endemics, A. humilis is not genetically depauperate when compared to its presumed progenitor. Both biochemical and morphological evidence suggest that A. humilis is derived from A. acaulis; the comparable levels of variability in the two species suggest that A. humilis was derived from a source containing a substantial portion of the original A. acaulis genome, because there is no evidence of a genetic bottleneck or appreciable loss of allelic variability.     

Ontogeny of gene expression in Pomoxis (pisces: Centrarchidae)

The regulation of gene expression during embryogenesis was investigated in white and black crappie (Pomoxis spp.) and their reciprocal interspecific F₁ hybrids. The schedule of morphological development and the timing of isozyme expression were compared among the two species and both reciprocal maternal half-sibling F₁ hybrids. Although absolute rates of morphological development differed in response to incubation temperature, relative rates of morphological development (normalized to the onset of retinal pigment deposition) were similar among all crosses. Furthermore, these relative rates were similar to those previously documented for other centrarchid species. To assess differences in ontogenetic patterns of gene expression among the crosses, we examined expression for 39 enzymeencoding loci. Expression was not detected in the embryos for 16 loci due to low or nonexistent activity. Enzymatic activity from eight other loci were continuously detected throughout embryogenesis as a result of maternal enzyme in the egg. However, 15 loci initiated expression during the early development period investigated (fertilization through yolk sac absorption). We observed temporal variability in expression of these 15 loci among the crosses, either in the form of differential expression between parental species or as disturbances in the ontogeny of expression in interspecific hybrids. Such variability in expression suggests that some of the gene regulating mechanisms have diverged since Pomoxis species shared a common ancestral genome. © 1994 Wiley-Liss, Inc.     

GENETIC PATTERNS ASSOCIATED WITH GROWTH VARIABILITY IN PONDEROSA PINE

Variability in annual growth increment in Pinus ponderosa was measured and heterozygosity level estimated in order to examine the relationship between genetic heterozygosity and phenotypic homeostasis in natural populations of a long-lived perennial plant. Pollen was collected from 190 ponderosa pine trees in the upper montane region of the Front Range in Colorado and four isozyme systems were resolved electrophoretically from these samples. Each tree was cored, aged, and each annual ring width measured. Statistics estimating within-tree variation in growth increment were then related to heterozygosity levels. The results indicated a significant positive association between level of heterozygosity and growth variability. Two speculations are offered to account for this relationship.     

Ecogeographical distribution of HMW glutenin alleles in populations of the wild tetraploid wheat Triticum turgidum var. dicoccoides

Summary Polymorphism of high molecular weight (HMW) glutenin subunits in 466 accessions of the wild tetraploid wheat Triticum turgidum var. dicoccoides in Israel was characterized with regard to the ecogeographical distribution of the HMW glutenin alleles, both between and within 22 populations, and along transects in a single population. While some populations were monomorphic for all the HMW glutenin loci, namely, Glu-A1-1, Glu-A1-2, Glu-B1-1 and Glu-B1-2, others contained up to four alleles per locus. Intrapopulation variability could be predicted by the geographical distribution: marginal populations tended to be more uniform than those at the center of distribution. The various HMW glutenin alleles tended to be clustered, both at a regional level and within a single population along transects of collection. It is suggested that this clustering is due to selection pressures acting both at a regional and at a microenvironmental level. This was confirmed by the significant correlations found between the MW of subunits encoded by Glu-A1-1 and the populations' altitude, average temperature and rainfall. The possible selective values of seed storage proteins are discussed.     

Population Genetic structure ofPotentilla fragariodes var.major (Rosaceae) in Korea

The genetic diversity and population structure of eighteenPotentilla fragariodes var.major (Rosaceae) populations in Korea were determined using genetic variations at 22 allozyme loci. The percent of polymorphic loci within the enzymes was 66.7%. Genetic diversity at the species level and at the population level was high (Hes = 0.203; Hep = 0.185, respectively), whereas the extent of the population divergence was relatively low (G_ST = 0.069). F_IS, a measure of the deviation from random mating within the 18 populations, was 0.075. An indirect estimate of the number of migrants per generation (Nm = 3.36) indicated that gene flow was high among Korean populations of the species. In addition, analysis of fixation indices revealed a slight heterozygote deficiency in some populations and at some loci. Wide geographic ranges, perennial herbaceous nature and the persistence of multiple generations are associated with the high level of genetic variation. AlthoughP. fragariodes var.major usually propagated by asexually-produced ramets, we could not rule out the possibility that sexual reproduction occurred at a low rate because each ramet may produce terminal flowers. Mean genetic identity between populations was 0.983. It is highly probable that directional movement toward genetic uniformity in a relatively homogeneous habitat operates among Korean populations ofP. fragariodes var.major.     

Reproductive success and genetic divergence among varieties of the rare and endangered <Emphasis Type="Italic">Astragalus cremnophylax</Emphasis> (Fabaceae) from Arizona,USA

Populations of Astragalus cremnophylax from Arizona and related A. humillimus from New Mexico were assessed for morphological, reproductive, genetic, and ecological differences. Results suggest that some of the taxa (i.e., A. cremnophylax var. cremnophylax and A. humillimus) are poor reproducers and environmental fluctuation is not likely a factor contributing to low fecundity in these species. Astragalus cremnophylax var. cremnophylax appears to have low fecundity due to inbreeding depression. Allozyme data from 18 loci show little within-population and taxon genetic variability. Most genetic variability is distributed among populations and taxa. The population of A. cremnophylax var. cremnophylax from the Grand Canyon (South Rim) was genetically depauperate, indicative of the bottleneck caused by historic trampling at this viewpoint. Cape Final, a population of A. cremnophylax var. cremnophylax on the Grand Canyon (North Rim) is genetically different from typical materials of this taxon (South Rim) and is more closely related to other taxa within this species complex. However, the other varieties of A. cremnophylax are more closely related to A. humillimus than the population at Cape Final, suggesting potential species status for Cape Final materials based on allozyme divergence.