The allometry of saguaro height

The allometry of plant height H with respect to mean stem diameter D was determined based on 118 saguaro plants. The slope obtained for the reduced major axis regression analysis of the data was 2.36 ± 0.085, indicating that taller plants are disproportionately more slender than their shorter, presumably younger counterparts. The consequences of this positive, extremely anisometric relation on the elastic stability of stems were estimated by computing the critical buckling height H_crit for each of the 118 stems on the basis of the mean density-specific stiffness (i.e., the quotient of Young's elastic modulus E and bulk tissue density ρ) determined for a single section from a mature saguaro stem. E/ρ was nearly equivalent to that of tissue samples of sclerenchyma isolated from other plant species. Since the slope of H_crit vs. D equals ≈ 0.67 when E/ρ ≈ a constant, the safety-factor for saguaro stems (i.e., H_crit/H) appeared to be size-dependent such that it decreased with increasing plant height (i.e., H_crit/H ≈ D^-1.65). However, the mean safety-factor computed for the 118 saguaro specimens was 9.64, indicating that, on the average, plant height was well below H_crit. Additionally, circumstantial evidence suggests that saguaro stems become more stiff as they increase in size (and age) and that the rate of stem growth decelerates over time. The former would obtain a near size-independent safety-factor against elastic buckling while the latter protracts the time required to reach the critical buckling height. Comparisons among the allometries of H and H_crit for saguaro, other cacti, nonwoody, and highly branched tree species indicated that saguaro size overlaps with the lower size-range of the largest known dicot and gymnosperm tree specimens likely as a consequence of the high E/ρ of mature saguaro stems.     

Stand variation in Pinus radiata and its relationship with allometric scaling and critical buckling height

Background and Aims

Allometric relationships and the determination of critical buckling heights have been examined for Pinus radiata in the past. However, how they relate to more mature Pinus radiata exhibiting a wide range of stem diameters, slenderness and modulus of elasticity (E) at operationally used stand densities is largely unknown. The aim of this study was to examine the relationship between Pinus radiata stand structure variables and allometric scaling and critical buckling height.

Methods

Utilizing a Pinus radiata Nelder trial with stand density and genetic breed as variables, critical buckling height was calculated whilst reduced major axis regression was used to determine scaling exponents between critical height (H_crit), actual height (H), ground line diameter (D), slenderness (S), density-specific stiffness (E/ρ) and modulus of elasticity (E).

Key Results

Critical buckling height was highly responsive to decreasing diameter and increasing slenderness. Safety factors in this study were typically considerably lower than previously reported margins in other species. As density-specific stiffness scaled negatively with diameter, the exponent of 0·55 between critical height and diameter did not meet the assumed value of 0·67 under constant density-specific stiffness. E scaled positively with stem slenderness to the power of 0·78.

Conclusions

The findings suggest that within species density-specific stiffness variation may influence critical height and the scaling exponent between critical height and diameter, which is considered so important in assumptions regarding allometric relationships.     

THE ALLOMETRY OF PLANT REPRODUCTIVE BIOMASS AND STEM DIAMETER

The allometry of reproductive biomass M was determined for one moss (Polytrichum commune), four pteridophytes (Psilophyton princeps, Psilotum nudum, Lycopodium lucidulum, and L. clavatum), six gymnosperms (Larix decidua, Pseudotsuga douglasii, Tsuga canadensis, Pinus rigida, Picea abies, and Taxus baccata), and two angiosperms (Crataegus sp. and Quercus bicolor). Biomass M was measured for individual and grouped reproductive organs and regressed as a function of stem diameter D measured proximal to M for representative reproductive stems from each species. Published data for Cooksonia pertoni were used to estimate sporangial M. The data from this vascular plant fossil were compared to those from other species. Least squares regression of the entire data set yielded M = 0.12D²,⁹ (r² = 0.94, N = 215), indicating that M, on the average, compiled with M D^α3.0. The allometries of the moss, pteridophyte, gymnosperm, and angiosperm species, however, were M = 0.46D^4.6 (r² = 0.99, N = 41), M = 0.07D^3.2 (r² = 0.91, N = 65), M = 0.56D^2.2 (r² = 0.92, N =85), and M = 0.44D^1.8 (r² = 0.97, N = 21), respectively, indicating that the proportionality M D^α3.0. recedes with finer taxonomic resolution. The data for Cooksonia were found to comply with the allometry of Polytrichum when the regression curve of this moss was extrapolated into the size range of the fossil species. Analyses showed that intraspecific allometric scaling factors α were dependent upon the manner in which plant stems taper. Species or portions of branching systems with α >; 4.0 had essentially untapered stems (e.g., Polytrichum commune, Psilotum nudum, twigs of Larix decidua); species with α <; 2.2 had tapered stems resulting from secondary growth in most cases. The evolution of tapered primary stems and secondary growth was interpreted to alter reproductive allometry.     

Preparation,properties and crystal structures of nickel(II) complexes with acyclic schiff bases derived from 2,6-diformyl-4-chlorophenol and 1,5-diamino-3-thiapentane or 3,3′-diamino-N-methyl-dipropylamine

Nickel(II) complexes with the compartmental Schiff bases derived from 2,6-diformyl-4-chlorophenol and 1,5-diamino-3-thiapentane (H₂L¹) or 3,3′-diamino-N-methyl-dipropylamine (H₂L²) were synthesized, and the crystal structures of [Ni(L¹)- (py)₂] and [Ni(L²)(dmf)]·H₂0 were determined by X-ray crystallography.Ni(L¹)(py)₂ is monoclinic, space group C2/c, with a= 18.457(6), b = 11.116(7), c= 16.098(6) Å, and β = 115.79(5)°; D_c = 1.49 g cm⁻³ for Z = 4. The structure was refined to the final R of 6.9%. The molecule has C₂ symmetry. The nickel atom is six-coordinated octahedral. Selected bond lengths are: NiO 2.04(1) Å, NiN (L¹) 2.08(1) Å, NiN(py) 2.17(1) Å.[Ni(L²)(dmf)]·H₂O is monoclinic, space group P2₁/n, with a = 17.329(6), b = 13.322(7), c = 12.476(7) Å and β = 95.43(5)°; D_c = 1.45 g cm⁻³ for Z = 4. The structure was refined to the final R of 5.1%. The nickel atom is bonded in the octahedral geometry to the bianionic pentadentate ligand L² and to one molecule of dimethylformamide. Selected bond lengths are: NiO (charged) 2.063(3) Å (mean value), NiO (neutral) 2.120(3) Å, NiN (planar) 2.050(3) Å (mean value), NiN (tetrahedral) 2.177(3) Å.     

Coordination chemistry of 7,9-disubstituted 6-oxopurine metal compounds. 4. Platinum(II) coordination at N(1). Molecular and crystal structure of [(ethylenediamine)bis(7,9-dimethylhypoxanthine)platinum(II)] hexafluorophosphate

The preparation and molecular and crystal structure of the complex [(ethylenediamine)bis(7,9,-dimethylhypoxanthine)platinum(II)] hexafluorophosphate, [Pt(C₂H₈N₂)(C₇H₈N₄O)₂] (PF₆)₂, are reported. The complex crystallizes in the monoclinic system, space group C2/c, with a = 12.334(2)Å, b = 10.256(2)Å, c = 22.339(3)Å, β = 101.31(1)°, V = 2771.0ų, Z = 4, D_measd = 2.087(3) g cm^?3, D_calc = 2.094 g cm^?3. Intensities for 3992 symmetry-averaged reflections were collected in the θ-2o scan mode on an automated diffractometer employing graphite-monochromatized MoKα radiation. The structure was solved by standard heavy-atom Patterson and Fourier methods. Full matrix least-squares refinement led to a final R value of 0.051. Both the ethylenediamine chelate and the PF₆^? anion are disordered. The primary coordination sphere about the Pt(II) center is approximately square planar with the bidentate ethylenediamine ligand and the N(1) atoms [Pt(II) ? N(1) = 2.020(5)Å] of two 7,9-dimethylhypoxanthine bases (related by a crystallographic twofold axis of symmetry) occupying the four coordination sites. The exocyclic O(6) carbonyl oxygen atoms of the two 7,9-dimethylhypoxanthine ligands participate in intracomplex hydrogen bonding with the amino groups of the ethylenediamine chelate [N(ethylenediamine) ? O(6) = 2.89( )Å]. The observed Pt ? O(6) intramolecular distances of 3.074(6)Å are similar to those found in other Pt(II) N(1)-bound 6-oxopurine complexes and in several Pt(II) N(3)-bound cytosine systems.     

Modelling environmental variation in Young's modulus for Pinus radiata and implications for determination of critical buckling height

• Background and Aims Although density-specific stiffness,E/, (where E is Young's modulus and is wood density) is oftenassumed constant by the elastic similarity model, and in determinationof critical buckling height (H_crit), few studies have testedthis assumption within species. Here this assumption is testedfor Pinus radiata growing across an environmental gradient,and theory is combined with data to develop a model of Young'smodulus. • Methods Analyses use an extensive series of environmentalplots covering the range of climatic and edaphic conditionsover which P. radiata is grown in New Zealand. Reduced majoraxis regression was used to determine scaling exponents betweenlog–log plots of H_crit vs. groundline diameter (D), andE/ vs. D. Path analysis was used to identify significant directand indirect (through stem slenderness) edaphic and climaticinfluences on E. • Key Results Density-specific stiffness exhibited 3-foldvariation. As E/ scaled positively with D, the exponent of 0·95between H_crit and D exceeded the assumed value of 0·67under constant E/. The final path analysis model included meanair temperature in early autumn (T_aut) and slenderness as significant(P < 0·05) positive direct influences on E. Tree leafarea index and T_aut were indirectly associated with E throughtheir significant (P < 0·05) positive direct relationshipwith stem slenderness. Young's modulus was most sensitive toT_aut, followed by stem slenderness then leaf area index, andthe final model explained 76 % of the variance in E. • Conclusions The findings suggest that within speciesE/ variation may influence H_crit and the scaling exponent betweenD and H_crit so important in assumptions regarding allometricrelationships. The model presented may provide a useful meansof determining variation in E, E/ and H_crit across environmentalgradients.     

Crystallization of the bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase domain of the human trifunctional enzyme

Methylenetetrahydrofolate([H₄] folate) dehydrogenase (D) and methenyl[H₄] folate cyclohydrolase (C) coexist as a bifunctional enzyme (DC) or as the amino-terminal domain of a trifunctional enzyme (DCS) where the third activity is 10-formyl[H₄]lfolate synthetase (S). Two crystal forms of the DC domain of the human cytosolic DCS enzyme have been grown from polyethyleneglycol solution. The monoclinic P2₁ crystals diffract to 2.8 Å with a = 72.5 Å, b = 68.5 Å, c = 125.2 Å, and β = 91.8° but were found to be twinned. The orthorhombic P2₁2₁2₁ crystals diffract to 2.5 Å with a = 67.7 Å, b = 135.9 Å, c = 61.6 Å, and contain two molecules per asymmetric unit. Proteins 26:479–480 © 1996 Wiley-Liss, Inc.     

Nitrogen concentration of cauliflower organs as determined by organ size,N supply,and radiation environment

Data from field experiments carried out in three consecutive years under contrasting N supply and radiation environment altered by artificial shading were used to identify (a) the relationship between N concentration and organ size under conditions of unrestricted N supply and (b) critical levels of soil nitrate (Nmin_crit), where nitrogen concentration of cauliflower organs begin to decline because of N limitations. The decline of N concentrations in cauliflower was analysed at different levels of morphological aggregation, i.e., the whole shoot level, the organ level (leaves, stem, and curd), and within different leaf groups within the canopy. Nmin_crit values (0–60 cm soil depth) for total nitrogen concentration of cauliflower organs leaves, stem and curd were estimated at 85, 93 and 28 kg N ha^–1, respectively. Within the canopy, Nmin_crit values for total N of leaves increased from the top to the bottom from 44 to 188 kg N ha^–1. Nmin_crit values for protein N in leaves from different layers of the canopy were much lower at around 30 kg N ha^–1, without a gradient within the canopy. It is discussed that these differences in Nmin_crit values are most likely a consequence of N redistribution associated with nitrogen deficiency. The decline of average shoot nitrogen concentrations, [Nm] (%N DM), with shoot dry matter, W _sh, (t ha^–1) under conditions of optimal N supply was [Nm]= 4.84 (±0.071) W _sh ^{–0.089(± 0.011)}, r ²=0.67 (±S.E.). The reduction of radiation intensity by artificial shading (60% of control) had no significant influence on total nitrogen concentrations of leaves and only a small influence on protein nitrogen concentrations in lower layers of the canopy. The leaf nitrate nitrogen fraction of nitrogen, f _nitr (–), within the canopy decreased linearly with increased average incident irradiance in different canopy layers (I _av, W PAR m^–2) (f _Nitr. = 0.2456(±0.0188) – 0.0023(±0.0004)I _av, r ² = 0.67.     

Structural and mass spectral studies on some multiply bonded diosmium tetracarboxylate compounds

The compounds Os₂(O₂CCH₃)₄Cl₂,1 and Os(O₂CC₂H₅)₄Cl₂, 2, have been structurally characterized. Both compounds crystallize in space group P2₁/n. For 1 the unit cell parameters are a = 6.546(1) Å, b = 8.950(1) Å, c = 12.533(1) Å, β = 90.17(1)° and Z = 2; for 2 they are a = 6.792(2) Å, b = 10.519(3) Å, c = 13.372(4) Å, β = 89.27(3)° and Z = 2. Both molecules have approximate D_4th symmetry with important dimensions as follows: for 1, Os≡Os 2.314(1) Å, OsCl 2.448(2) Å; for 2, Os≡Os 2.316(2) Å, OsCl 2.430(5) Å. The mass spectra of these compounds as well as that of Os₂(O₂CC₃H₇)₄Cl₂,3, are reported and discussed.     

A novel and high-throughput approach to assess photosynthetic thermal tolerance of kelp using chlorophyll α fluorometry

Foundation seaweed species are experiencing widespread declines and localized extinctions due to increased instability of sea surface temperature. Characterizing temperature thresholds are useful for predicting patterns of change and identifying species most vulnerable to extremes. Existing methods for characterizing seaweed thermal tolerance produce diverse metrics and are often time-consuming, making comparisons between species and techniques difficult, hindering insight into global patterns of change. Using three kelp species, we adapted a high-throughput method – previously used in terrestrial plant thermal biology – for use on kelps. This method employs temperature-dependent fluorescence (T–F₀) curves under heating or cooling regimes to determine the critical temperature (T_crit) of photosystem II (PSII), i.e., the breakpoint between slow and fast rise fluorescence response to changing temperature, enabling rapid assays of photosynthetic thermal tolerance using a standardized metric. This method enables characterization of T_crit for up to 48 samples per two-hour assay, demonstrating the capacity of T–F₀ curves for high-throughput assays of thermal tolerance. Temperature-dependent fluorescence curves and their derived metric, T_crit, may offer a timely and powerful new method for the field of phycology, enabling characterization and comparison of photosynthetic thermal tolerance of seaweeds across many populations, species, and biomes.     

Fungicidal Properties of Some Novel Trifluoromethylphenyl Amides

Trifluoromethylphenyl amides (TFMPAs) were designed and synthesized as potential pesticides. Thirty‐three structures were evaluated for fungicidal activity against three Colletotrichum species using direct bioautography assays. Active compounds were subsequently tested against C. fragariae, C. gloeosporioides, C. acutatum, Phomopsis obscurans, P. viticola, Botrytis cinerea and Fusarium oxysporum. The study identified 2‐chloro‐N‐[2,6‐dichloro‐4‐(trifluoromethyl)phenyl]acetamide ( 7a ) as showing the strongest antifungal activity, and the broadest activity spectrum in this set against Colletotrichum acutatum (at 48 and 72 h) and Phomopsis viticola (at 144 h). The presence of triethylamine in its complex with N‐[2,6‐dichloro‐4‐(trifluoromethyl)phenyl]‐2,2,3,3,3‐pentafluoropropanamide ( 7b′ ) played an important role in the bioactivity, and depending on the concentration or fungal species it showed higher or lower activity than the parent amide. X‐Ray crystallography has shown that the complex ( 7b′ ) is an ion pair, (C₁₀H₂Cl₂F₈NO)^? (C₆H₁₆N)⁺, where a proton is transferred from the amide nitrogen to the triethylamine nitrogen and then connected by hydrogen bonding to the acyl oxygen (N?H 0.893 Å; H???O 1.850 Å; N???O 2.711 Å; N?H???O 161.2(13)°). Although none of these compounds were better than standards, this work revealed some potential lead structures for further development of active novel compounds.     

Synthesis and coordination chemistry of tripodal dialkyl[1,2-bis(diethylcarbamoyl)ethyl]phosphonates with lanthanide nitrates

Trifunctional dialkyl [1,2-bis(diethylcarbamoyl)- ethyl] phosphonates, (RO)₂P(O)CH[C(O)N(C₂H₅)₂]- [CH₂C(O)N(C₂H₅)₂] R  CH₃, C₂H₅, i-C₃H₇, n-C₆H₁₃ were prepared from the respective sodium salts, Na[(RO)₂P(O)CHC(O)N(C₂H₅)₂] and N,N- diethylchloroacetamide, and they were characterized by elemental analysis, mass, infrared and NMR spectroscopy. The molecular structure of (i-C₃H₇O)₂- P(O)CH[C(O)N(C₂H₅)₂][CH₂C(O)N(C₂H₅)₂] was determined by single crystal X-ray diffraction analysis and found to crystallize in the monoclinic space group P2₁/c with a=15.589(6), b=9.783(4), c= 16.283(7) Å, β = 110.90(3)°, Z = 4 and V= 2320(2) ų. The structure was solved by direct methods and blocked least-squares refinement converged with Rf = 5.7% and R_wF= 4.4% on 2266 unique data with F>4σ(F). Important bond distances include PO 1.459(3) Å, CHCO 1.228(3) Å and CHCH₂CO 1.223(3) Å. The coordination chemistry of the ligand with several lanthanides was examined, and the structure of the complex Gd(NO₃)₃{[(i-C₃H₇O)₂P(O)CH[C(O)N(C₂H₅)₂][CH₂C(O)N(C₂H₅)₂]}₂·H₂O was determined. The complex crystallized in the monoclinic space group P2₁/n with a = 13.524(5), b = 22.033(4), c = 19.604(4) Å β = 106.22(2)°, Z = 4 and V= 5609(3) ų. The structure was solved by heavy atom techniques and blocked least-squares refinement converged with R_F = 5.9% and R_wF = 4.1% on 5275 reflections with F > 4σ(F). Both trifunctional ligands were found to bond to Gd(III) through only the phosphoryl oxygen atoms. The remainder of the Gd coordination sphere was composed of three bidentate nitrate oxygen atoms and an oxygen bonded water molecule. Several important bond distances include GdO(phosphoryl)_av = 2.343(5) Å, GdO(nitrate)_av = 2.475(7) Å, GdO(water) = 2.354(5) Å, PO(phosphoryl)_av = 1.467(6) Å, CHCO_av = 1.242(10) Å and CHCH₂CO_av = 1.209(11) Å.     

Genetic Divergence of Far-Eastern Dace Species Belonging to the Genus Tribolodon (Pisces, Cyprinidae) and Closely Related Taxa

Based on a biochemical–genetic approach, heterozygosity and divergence of structural genes at 30 enzyme loci were analyzed in six dace species. In addition, intra- and interspecific divergence of gene expression was analyzed based on a sample of 12 to 15 loci. Mean heterozygosities per individual varied as follows: Tribolodon species, H _obs = 0.007 ± 0.007 and H _exp = 0.007 ± 0.007; T. ezoe, H _obs = 0.045 ± 0.016 and H _exp = 0.067 ± 0.029. Several variants of genetic distances were estimated. Standard Nei's distances (D _N) varied from 0.145 to 0.284 in four dace species studied. As related to Tribolodon dace species, the following genetic distances were obtained for two members of other genera:Pseudaspius leptocephalus, D _N = 0.269; Leuciscus waleckii, D _N = 0.769. Based on the distance matrices, different clustering algorithms were realized. The main feature shared by different dendrograms was a separate position of the cluster joining Far-Eastern dace species, to whichP. leptocephalus and L. waleckii are successively added. Among the species studied, the proportion of loci similar by expression (E) varied from 87 to 100%. The greatest difference was found between landlocked and landlocked ecotypes of T. hakonensis, E = 67%. The following conclusions can be made: (1) Four studied species of the genus Tribolodon are rather well genetically differentiated. Diagnostic loci are available. (2) A nominal dace species, T. species, should be considered the fourth unambigous species of this genus, which is confirmed by its recent zoological acceptance of this species. (3) The origin and divergence of dace species belonging to the genus Tribolodon are relatively late (1 to 3 Myr ago) historical events. (4) Taxonomically, the genus Tribolodon belong to the tribe Pseudaspinini together with P. leptocephalus, which is confirmed by genetic data. (5) Data on heterozygosity and the divergence of structural and regulatory elements of genome, along with the proposed scheme of speciation types, suggest the following speciation modes for the species studied: for four species, adaptive divergence and for two species, genetic transformation.     

Heart rate as an indicator of stress during the critical swimming speed test of farmed Atlantic salmon (Salmo salar L.)

A swim tunnel is to fish as a treadmill is to humans, and is a device used for indirect measuring of the metabolic rate. This study aims to explore the fish stress (if any) during the critical swimming test routines (fish handling, confinement, and swimming) using heart rate (f_H, heartbeat per minute) bio-loggers in farmed Atlantic salmon (Salmo salar L.). In addition, the recovery dynamics of exercised fish using f_H were explored for 48 h post swim tests. Continuous f_H data were acquired following the surgical implantation and throughout the trials, such as during fish handling, swim tests (critical swimming speed, U_crit), and 48 h post swim tests. After 3 weeks of surgical recovery, f_H stabilized at 46.20 ± 1.26 beats min⁻¹, equalizing a ~38% reduction in f_H recorded post-surgical tachycardia (74.13 ± 1.44 beats min⁻¹). Interestingly, f_H was elevated by ~200% compared to baseline levels not only due to the U_crit (92.04 ± 0.23 beats min⁻¹) but also due to fish handling and confinement in the swim tunnel, which was 66% above the baseline levels (77.48 ± 0.34 beats min⁻¹), suggesting fish stress. Moreover, significantly higher plasma cortisol levels (199.56 ± 77.17 ng mL⁻¹) corresponding to a ~300% increase compared to baseline levels (47.92 ± 27.70 ng mL⁻¹) were identified after U_crit, predicting post-swim test stress (physiological exhaustion). These findings reinforce the importance of fish acclimation in the swim tunnel prior to the swimming tests. However, f_H dropped over the course of the 48-h post-swim test, but remained comparatively higher than the basal levels, suggesting fish should be given at least 48 h to recover from handling stress for better fish welfare. This study further explored the influence of fish tagging on U_crit, which resulted in reduced swimming capabilities of tagged fish (1.95 ± 0.37 body lengths s⁻¹) compared to untagged fish (2.54 ± 0.42 body length s⁻¹), although this was not significant (p = 0.06), and therefore future tagging studies are warranted.     

Molecular genetic relationships among east Palaerctic ground squirrels of the genus <Emphasis Type="Italic">Spermophilus</Emphasis> (Sciuridae,Rodentia)

Abstact  Genetic diversity in the four east Palearctic ground squirrel species of the genus Spermophilus—S. undulatus, S. parryi (subgenus Urocitellus), S. dauricus, and S. relictus (subgenus Citellus)—was investigated using RAPD PCR with ten random primers. Siberian chipmunk, Tamias sibiricus, was used as an out-group. Molecular markers for different taxonomic ranks were identified, including those for the genera Spermophilus and Tamias, subgenera Urocitellus and Citellus, as well as for each of the four species, S.undulatus, S. parryi, S. dauricus, and S. relictus. For the ground squirrel species and subgenera, genetic differentiation indices (H _t, H _s, D _st, G _st,Nm, and D) were calculated. In addition, for these groups the NJ phylogenetic reconstructions and UPGMA dendrograms of genetic similarity of the individuals and combined populations were constructed. Comparative molecular genetic analysis revealed a high genetic differentiation between S. undulatus, S. dauricus, S. relictus, and S. parryi (G _st= 0.58 to 0.82; D= 0.53 to 1.06), along with a low level of genetic differentiation of the subgenera Citellus and Urocitellus (G _st = 0.33; D= 0.27), distinguished in accordance with the existing taxonomic systems of the genus Spermophilus Original Russian Text ? M.V. Tsvirka, L.N. Spiridonova, V.P. Korablev, 2008, published in Genetika, 2008, Vol. 44, No. 8, pp. 1108–1116.     

The crystal and molecular structure of bis(2,2′-dipyridylamine-N,N′)di(nitrato-O)cadmium(II); Solid state 113Cd NMR,components and orientation of the chemical shift tensor relative to the donor ligands

The structure of the titled compound has been determined and refined. The structure consists of isolated molecules separated by ordinary Van der Waals' distances. The Cd atom is on a crystallographic center of symmetry. The coordination polyhedron of the Cd atom is distorted octahedral with four pyridine nitrogen donors in the equatorial plane and with axial oxygen atoms from the nitrate groups. The CdO distance is 2.599(4) Å, the CdN distances are 2.310(4) and 2.316(3) Å, and the NCdN bite angle is 79.0(1)°. The solid state magic angle spinning/cross polarization ¹¹³Cd NMR isotropic chemical shift is +51.4 ppm and the components of the chemical shift tensor are: S₁₁= −92 ppm, S₃₃ = +208 ppm and S₂₂ = +39 ppm and their directions are: in the CdN₄ plane and bisecting the NCdN bite angle, perpendicular to the CdN₄ plane and the third perpendicular to the other two, respectively. This permits the assignment of contributions to the chemical shift tensor of 50 ppm from pyridine nitrogen and of −50 ppm from nitrate oxygen. From the tensor components, atomic nitrogen can be distinguished from aliphatic nitrogen donors. Crystal data: C₂₀H₁₈O₆N₈Cd; M_r = 578.8, F(000) = 580, monoclinic, P2₁/c, a = 8.591(1), b = 16.496(2), c = 7.878(1) Å, β = 95.97°, λ = 0.71073 Å, Mo Kα, V = 1110(1) ų. Z = 2, D_m = 1.73(2), D_x = 1.73 g/cm³, μ = 10.3 cm⁻¹, R_f = 0.039, 1834 reflections, 160 parameters, T ∼ 298 K. Refinement was by full matrix least-squares with anisotropic temperature factors.     

Chain length dependent transition of 310- to α-helix of Boc-(Ala-Aib)n-OMe

An apolar synthetic octapeptide, Boc-(Ala-Aib)₄-OMe, was crystallized in the triclinic space group P1 with cell dimensions a = 11.558 Å, b = 11.643 Å, c = 9.650 Å, α = 120.220°, β = 107.000°, γ = 90.430°, V = 1055.889 ų, Z = 1, C₃₄H₆₀O₁₁N₈·H₂O. The calculated crystal density was 1.217 g/cm³ and the absorption coefficient ? was 6.1. All the intrahelical hydrogen bonds are of the 3₁₀ type, but the torsion angles, ? and ψ, of Ala(5) and Ala(7) deviate from the standard values. The distortion of the 3₁₀-helix at the C-terminal half is due to accommodation of the bulky Boc group of an adjacent peptide in the nacking. A water molecule is held between the N-terminal of one peptide and the C-terminal of the other. The oxygen atom of water forms hydrogen bonds with N (1) -H and N (2) -H, which are not involved in the intrahelical hydrogen bonds. The hydrogen atoms of water also formed hydrogen bonds with carbonyl oxygens of the adjacent peptide molecule. On the other hand, ¹H-nmr analysis revealed that the octapeptide took an α-helical structure in a CD₃CN solution. The longer peptides, Boc-(Ala-Aib)₆-OMe and Boc-(Ala-Aib)₈-OMe, were also shown to take an α-helical structure in a CD₃CN solution. An α-helical conformation of the hexadecapeptide in the solid state was suggested by x-ray analysis of the crystalline structure. Thus, the critical length for transition from the 3₁₀- to α-helix of Boc-(Ala-Aib)_n-OMe is 8. © 1993 John Wiley & Sons, Inc.     

The crystal structure of 2-deoxy-β-d-arabino-hexopyranose at −150°

2-Deoxy-β-d-arabino-hexopyranose, C₆H₁₂O₅, is orthorhombic, P2₁2₁2₁, with cell dimensions at ?150° [20°], a = 6.484(2) [6.510(3)], b = 10.364(2) [10.427(4)], c = 11.134(3) [11.153(5)] Å, V = 748.2 [757.1] ų, Z = 4, D_x = 1.457 [1.440], and D_m = [1.455] g.cm^?3. The intensities of 1269 reflections were measured by using MoKα radiation. The structure was solved by direct methods, and refined by full-matrix least-squares, with anisotropic, thermal parameters for the carbon and oxygen atoms, and isotropic parameters for the hydrogen atoms. The pyranose has the ⁴C₁(d) conformation, with puckering parameters Q = 0.563 Å, θ = 3.9°, and ? = 350.3°. The departure from ideality is very small, and less than that in β-d-glucopyranose, Q = 0.584 Å and θ = 6.9°. The β-glycosidic, CO bond is short, 1.383(4) Å, and the OCOH torsion angle is ?87°, consistent with the anomeric effect. The hydrogen-bonding scheme consists of infinite chains, with side chains terminating at a ring-oxygen atom.     

Hydrocarbon fermentation: Kinetics of microbial cell growth

Modeling of microbial growth using nonmiscible substrate is studied when kinetics of substrate dissolution is rate limiting. When the substrate concentration is low, the growth rate is described by an analytical relation that can be identified as a Contois relationship. If the substrate concentration is greater than a critical value S_crit, the potentially useful hydrocarbon S* concentration is described by S* = S_crit/(1 + S_crit/S). A relationship was found between S_crit and the biomass concentration X. When X increased, S_crit decreased. The cell growth rate is related to a relation μ = μ_m[A(X/S_crit)(1 + S_crit/S) + 1]^?1. This model describes the evolution of the growth rate when exponential or linear growth occurs, which is related to physico-chemical properties and hydrodynamic fermentation conditions. Experimental data to support the model are presented.