BREEDING SYSTEM OF THE FERN DRYOPTERIS EXPANSA: EVIDENCE FOR MIXED MATING

The levels and distribution of genetic variation within and among populations of the homosporous fern Dryopteris expansa were assessed using enzyme electrophoresis. Twelve loci representing six enzymes were examined in 502 sporophytes from nine populations. Values of P, H, and mean number of alleles per locus are much lower in D. expansa compared to values for other fern species. Values of F varied from –0.014 to 0.745 with an average F of 0.335. There was also considerable population to population variation in F. In three populations the observed heterozygosity closely approximated that expected at Hardy-Weinberg equilibrium, whereas in the remaining populations observed heterozygosity was significantly lower than the expected heterozygosity. In D. expansa the major component of F_IT is F_IS; the relatively high F_ST value suggests a high degree of interpopulational differentiation. Electrophoretic data suggest that this species possesses a mixed mating system. This study, in conjunction with other investigations, indicates that just as in angiosperms, a variety of breeding systems operates in homosporous ferns, ranging from extreme inbreeding, through mixed mating to outcrossing.     

THE DISTRIBUTION OF SELFING RATES IN HOMOSPOROUS FERNS

The models of Lande and Schemske predict that among species in which the selfing rate is largely under genetic control and not subject to tremendous environmental variation, the distribution of selfing rates should be bimodal. When this prediction was tested empirically using data from the literature for species of angiosperms and gymnosperms, the distribution of outcrossing rates for all species was clearly bimodal. To provide another empirical test of the prediction, we analyzed mating-system data for 20 species of Pteridophyta (ferns). Homosporous ferns and their allies are unique among vascular plants because three types of mating are possible: intragametophytic selfing (selfing of an individual gametophyte); intergametophytic selfing (analogous to selfing in seed plants); and intergametophytic crossing (analogous to outcrossing in seed plants). The distribution of intragametophytic selfing rates among species of homosporous ferns is clearly uneven. Most species of homosporous ferns would be classified as extreme outcrossers. In contrast, a few species are nearly exclusively inbreeding. In only a few populations of Dryopteris expansa and Hemionitis palmata and a single population of Blechnum spicant do we see convincing evidence of a mixed mating system. The uneven distribution of selfing rates we observed for homosporous ferns, coupled with a corresponding bimodality of the magnitude of genetic load, strongly supports the model.     

MATING SYSTEM AND DISTRIBUTION OF GENETIC VARIATION IN GYMNOCARPIUM DRYOPTERIS SSP. DISJUNCTUM

Levels and distribution of genetic variation were analyzed in 15 populations of the homosporous fern Gymnocarpium dryopteris ssp. disjunctum to evaluate the mating system and the genetic structure of this taxon. Estimated rates of intragametophytic selling were 0.000 in all populations, signifying that all sporophytes examined arose via intergametophytic matings. Furthermore, values of F, the fixation index, ranged from –0.171 to 0.038, indicating that all populations approach Hardy-Weinberg equilibrium. Therefore, not only is intragametophytic selling rare in G. dryopteris ssp. disjunctum, but intergametophytic selling is also uncommon. Factors promoting outcrossing in G. dryopteris ssp. disjunctum include an antheridiogen system, an ontogenetic sequence that favors intergametophytic matings, and high levels of genetic load. Analysis of F-statistics indicated statistically significant genetic differentiation among populations despite a mean genetic identity of 0.973 and high levels of interpopulational gene flow (Nm = 3.41 to 4.09). These patterns may reflect levels of gene flow that prevent significant interpopulational divergence while permitting slight genetic differentiation among populations.     

POPULATION STRUCTURE AND ESTIMATES OF GENE FLOW IN THE HOMOSPOROUS FERN POLYSTICHUM MUNITUM

Levels and distribution of genetic variation were investigated in the homosporous fern, Polystichum munitum. Homosporous ferns differ from higher vascular plants in that they possess potentially bisexual gametophytes which can produce a completely homozygous sporophyte in a single generation. Because of this, it has long been maintained that ferns possess an inbreeding mating system, resulting in low levels of genetic variation and high levels of homozygosity within populations. The four populations sampled maintain high levels of genetic variation (P? = 0.542; H? = 0.111; ā = 2.23), comparable to that maintained by populations of outcrossing seed plants. The mean fixation index, F, for the four populations was 0.052, indicating no significant deviations from Hardy-Weinberg genotypic expectations. Polystichum munitum distributes most of its genetic variation within rather than among populations. Population-genetic structure was assessed by subdividing each of two large populations into 10 × 10-m subpopulations. Comparisons of genetic variation within and among subpopulations indicated little genetic substructure within either of the artificially subdivided populations. Estimates of interpopulational gene flow (Nm) are extremely high, comparable to those reported for gymnosperms. Statistical estimates of intragametophytic selling are very low, ranging from 0 to 3%. This study suggests that Polystichum munitum is an outcrossing species. Evidence from this and other investigations indicates that fern species do not typically self-fertilize and that mating systems in ferns vary as they do among species of seed plants.     

INBREEDING AND THE RATE OF SELF-FERTILIZATION IN A GRAPE FERN,BOTRYCHIUM DISSECTUM

Botrychium dissectum is a homosporous fern with bisexual, subterranean gametophytes. Because of these features, B. dissectum would be suspected of displaying a very high frequency of self-fertilization. Sporophytes collected from three populations of this species were assayed for heterozygosity by determining the electrophoretic mobility patterns displayed by two polymorphic enzymes. Extreme deviations from Hardy-Weinberg expectations were observed in each population and analyzed by means of F-statistics. The average inbreeding coefficient was found to be 0.951. A population genetic model is derived that demonstrates that the rate of intragametophytic self-fertilization in homosporous ferns is equal to the inbreeding coefficient calculated from deviations from Hardy-Weinberg expectations. It is therefore concluded that B. dissectum outcrosses about 5% of the time.     

Evolution of Inbreeding and Outcrossing in Ferns and Fern-Allies

Abstract Mating systems of 18 species of homosporous ferns follow a bimodal distribution, similar to that observed for seed plants (Schemske and Lande, 1985). Most species are highly outcrossing, a few are inbreeding, and two species examined to date have mixed mating systems. Equisetum arvense and several species of lycopods are also highly outcrossing. Several mechanisms, including inbreeding depression, antheridiogen, and ontogenetic sequences that result in effectively unisexual gametophytes, promote outcrossing in homosporous ferns and perhaps other homosporous pteridophytes as well. In some species of homosporous ferns, selection has favored the evolution of inbreeding as an adaptation for colonization. High levels of intra- and interpopulational gene flow via spore dispersal, coupled with high levels of intergametophytic crossing, generally lead to genetically homogeneous populations and species of homosporous ferns. However, rock-dwelling ferns and ferns from xeric habitats may exhibit significant population genetic structure due to physically patchy habitats. Reticulate evolution in homosporous ferns may be enhanced by high levels of intergametophytic crossing.     

POPULATION GENETIC STRUCTURE IN CHEILANTHES GRACILLIMA

Population genetic structure was examined in five populations of the xerically adapted homosporous fern Cheilanthes gracillima. F statistics using allozymic data indicated substantial genetic structure in all populations. To determine the factors responsible for genetic structure, we calculated levels of intragametophytic selfing and the fixation index for each subpopulation of each population and estimated levels of intrapopulational gene flow in each population. These analyses indicated that each subpopulation was a panmictic unit; thus, population genetic structure is not due to family structure, arising via matings between relatives. Intrapopulational gene flow was surprisingly low, given the typically high dispersibility of fern spores. However, it seems unlikely that spore dispersal in C. gracillima is significantly reduced relative to other homosporous ferns. Instead, we propose that the low rates of intrapopulational gene flow reflect limited availability of safesites for spore germination and gametophyte establishment. This ecological factor may play a primary role in generating and/or maintaining population genetic structure in C. gracillima.     

GENETIC VARIATION AND POPULATION STRUCTURE IN THE FERN BLECHNUM SPICANT (BLECHNACEAE) FROM WESTERN NORTH AMERICA

Population genetic structure in the homosporous fern Blechnum spicant was analyzed in six populations from western North America. Each population was divided into approximately 10 m by 10 m subpopulations, and genetic variation within and among subpopulations was compared using enzyme electrophoresis and F statistics. These analyses indicated that there was no evidence of genetic structure in four of the six populations examined. However, significant genetic heterogeneity among subpopulations was observed for the other two populations. The genetic structure of these populations may be attributable, in part, to family structure resulting from high rates of intragametophytic selling and/or spatial patchiness in the distribution of individuals due to limited habitat availability in these areas. Outcrossing populations of B. spicant generally lack genetic structure, whereas the most highly inbreeding population maintains significant genetic structure. The information obtained in this investigation of population genetic structure in Blechnum spicant is consistent with data for angiosperms and gymnosperms. It appears that the outcrossing mating system and effective mechanism of spore dispersal in B. spicant may account for the general lack of genetic structure within populations of this species.     

Plant traits correlated with generation time directly affect inbreeding depression and mating system and indirectly genetic structure

Background  

Understanding the mechanisms that control species genetic structure has always been a major objective in evolutionary studies. The association between genetic structure and species attributes has received special attention. As species attributes are highly taxonomically constrained, phylogenetically controlled methods are necessary to infer causal relationships. In plants, a previous study controlling for phylogenetic signal has demonstrated that Wright's F _ST, a measure of genetic differentiation among populations, is best predicted by the mating system (outcrossing, mixed-mating or selfing) and that plant traits such as perenniality and growth form have only an indirect influence on F _ST via their association with the mating system. The objective of this study is to further outline the determinants of plant genetic structure by distinguishing the effects of mating system on gene flow and on genetic drift. The association of biparental inbreeding and inbreeding depression with population genetic structure, mating system and plant traits are also investigated.     

ESTIMATED RATES OF INTRAGAMETOPHYTIC SELFING IN LYCOPODS

Homosporous pteridophytes are characterized by the production of free-living, potentially bisexual gametophytes. Because of the close proximity of archegonia and antheridia on the same thallus, it has been assumed that high rates of intragametophytic self-fertilization would predominate in natural populations of homosporous pteridophytes. Using enzyme electrophoresis we determined sporophytic genotype frequencies for natural populations of three lycopod species, Lycopodium clavatum, L. annotinum, and Huperzia miyoshiana. Based on these genotype frequencies and the estimation procedures of Holsinger (1987), the estimated rates of intragametophytic selfing in these species are extremely low. Estimated selfing rates were greater than 0.000 in only two of 13 populations of L. clavatum, one of six populations of L. annotinum, and one of four populations of H. miyoshiana. Despite the potential for intragametophytic self-fertilization, the gametophytes of these three lycopod species predominantly cross-fertilize, although the mechanism(s) promoting intergametophytic matings are unknown. These results are similar to those obtained for homosporous ferns and Equisetum arvense. It is therefore clear that most homosporous pteridophyte species investigated do not exhibit high rates of intragametophytic self-fertilization; in contrast, intergametophytic matings predominate.     

Genetic variation within and among populations of the narrow endemic,delphinium viridescens (Ranunculaceae)

Delphinium viridescens Leiberg (Ranunculaceae) is a narrow endemic, known from only 17 populations in the Wenatchee Mountains of central Washington. Electrophoretic data for ten loci and approximately 50 plants from each of the 17 populations indicate high levels of variability both within and among populations. High levels of heterozygosity, coupled with a general conformance of genotype frequencies to Hardy-Weinberg expectations, suggest that D. viridescens is an outcrossing species, and outcrossing rates range from 0.391 to 1.454. Although all populations share a suite of common alleles, interpopulational differences in allele frequency were detected. Nei's genetic identities range from 0.883 to 1.000, with a mean of 0.964, suggesting only slight differentiation among populations and at least moderate levels of interpopulational gene flow. However, F_ST values indicate greater interpopulational heterogeneity. The data from this study are intended for use in developing a management plan for D. viridescens, to maintain the viability of this species, and to assess the need for its listing as threatened or endangered.     

Patterns of genetic variability in Brazilian Littorinids (Mollusca): a macrogeographic approach

Macrogeographic studies are important for understanding gene flow patterns, and comparative data for related species with distinct bionomical traits may help to clarify the importance of such traits in natural populations. The aims of this study were to quantify the genetic variability and the populational structuring of three Brazilian littorinid species (Nodilittorina lineolata, Littoraria flava and L. angulifera) and to discuss the relationship between them, as well as each species’ mode of development and spatial distribution. We also investigated the species diversity in the ziczac complex. Isozyme analyses were done on 20 samples of N. lineolata, nine of L. flava and 10 of L. angulifera, collected along 4000 km of the Brazilian coast. Sixteen polymorphic loci were analysed in N. lineolata, 15 in L. angulifera and 17 in L. flava. All species showed high genetic variability. At sites where more than one species was present, there was a correlation among the values of gene diversity.The degree of interpopulational differentiation (N. lineolata, F_ST = 0.028; L. flava, F_ST = 0.054; L. angulifera, F_ST = 0.185) was coherent with the mode of larval development of each species. No linkage disequilibrium was found in N. lineolata. These findings, together with morphological evidence, corroborated the existence of only one species of the ziczac complex along the Brazilian coast.     

Historical vicariance and male-mediated gene flow in the toad-headed lizards Phrynocephalus przewalskii

Using mitochondrial and microsatellite DNA data and a population genetic approach, we tested male‐mediated gene flow in the toad‐headed lizards Phrynocephalus przewalskii. The mitochondrial DNA (ND2 gene), on the one hand, revealed two major lineages and a strong population genetic structure (F_ST = 0.692; F_ST′ = 0.995). The pairwise differences between the two lineages ranged from 2.1% to 6.4% and the geographical division of the two lineages coincided with a mountain chain consisting of the Helan and Yin Mountains, suggesting a historical vicariant pattern. On the other hand, the nuclear microsatellite DNA revealed a significant but small population genetic structure (F_ST = 0.017; F_ST′ = 0.372). The pairwise F_ST among the nine populations examined with seven microsatellite DNA loci ranged from 0.0062 to 0.0266; the assignment test failed to detect any naturally occurring population clusters. Furthermore, the populations demonstrated a weak isolation by distance and a northeast to southwest clinal variation, rather than a vicariant pattern. A historical vicariant event followed by male‐mediated gene flow appears to be the best explanation for the data. Approximately 2–5 Ma, climatic change may have created an uninhabitable zone along the Helan‐Yin mountain chain and initiated the divergence between the two mitochondrial lineages. With further climatic changes, males were able to disperse across the mountain chain, causing sufficient gene flow that eventually erased the vicariant pattern and drastically reduced the population genetic structure, while females remained philopatric and maintained the mitochondrial DNA (mtDNA) divergence. Although polygyny mating system and female philopatry may partially contribute to the reduced movement of females, other hypotheses, such as female intrasexual aggression, should also be explored.     

Microsatellites reveal substantial among-population genetic differentiation and strong inbreeding in the relict fern Dryopteris aemula

Background and Aims

A previous study detected no allozyme diversity in Iberian populations of the buckler-fern Dryopteris aemula. The use of a more sensitive marker, such as microsatellites, was thus needed to reveal the genetic diversity, breeding system and spatial genetic structure of this species in natural populations.

Methods

Eight microsatellite loci for D. aemula were developed and their cross-amplification with other ferns was tested. Five polymorphic loci were used to characterize the amount and distribution of genetic diversity of D. aemula in three populations from the Iberian Peninsula and one population from the Azores.

Key Results

Most microsatellite markers developed were transferable to taxa close to D. aemula. Overall genetic variation was low (H_T = 0·447), but was higher in the Azorean population than in the Iberian populations of this species. Among-population genetic differentiation was high (F_ST = 0·520). All loci strongly departed from Hardy–Weinberg equilibrium. In the population where genetic structure was studied, no spatial autocorrelation was found in any distance class.

Conclusions

The higher genetic diversity observed in the Azorean population studied suggested a possible refugium in this region from which mainland Europe has been recolonized after the Pleistocene glaciations. High among-population genetic differentiation indicated restricted gene flow (i.e. lack of spore exchange) across the highly fragmented area occupied by D. aemula. The deviations from Hardy–Weinberg equilibrium reflected strong inbreeding in D. aemula, a trait rarely observed in homosporous ferns. The absence of spatial genetic structure indicated effective spore dispersal over short distances. Additionally, the cross-amplification of some D. aemula microsatellites makes them suitable for use in other Dryopteris taxa.     

Genetic differentiation between the ant Myrmica rubra and its microgynous social parasite

Hymenopteran inquiline species have been proposed to originate by sympatric speciation through intraspecific social parasitism. One such parasite, Myrmica microrubra, was recently synonymized with its Myrmica rubra host, because comparisons across Europe indicated insufficient genetic differentiation. Here, we use microsatellite markers to study genetic differentiation more precisely in a sample of Finnish M. rubra and its inquilines collected at two localities, supplemented with mitochondrial DNA sequences. The parasite had much lower genetic variation than the host at three of the four loci studied. Genetic differentiation between the host populations was moderate (F _ST = 0.089), whereas the parasite populations were more strongly subdivided (F _ST = 0.440). The host and parasite were highly genetically differentiated both across populations (F _ST = 0.346) and in strict sympatry (0.327, 0.364), a result that remained robust both in a haplotype network and in PCA ordination. Individual assignments of genotypes indicated that gene flow between sympatric host and inquiline populations is reduced by about an order of magnitude relative to the gene flow within the morphs. Our results suggest that the parasitic morph of M. rubra may be an incipient species, but it remains unclear to what extent the observed genetic differentiation between host and inquiline is due to possible assortative mating and selection against hybrids or to recurrent bottlenecking and genetic drift. We conclude that an explicitly functional species concept would be unambiguous in treating this inquiline as a full species, as it begets its own kind and maintains its integrity in spite of occasional interbreeding with the host.     

A clever solution to a vexing problem

F_ST (as well as related measures such as G_ST) has long been used both as a measure of the relative amount of genetic variation between populations and as an indicator of the amount of gene flow among populations. Unfortunately, F_ST and its clones are also sensitive to mutation, particularly when the mutation rate per locus is greater than the migration rate among populations. Relatively high mutation rates cause estimates of F_ST and G_ST to be much lower than researchers sometimes expect, when migration rates are low in the studied species. Several recent suggestions for dealing with this problem have been unsatisfactory for one reason or another, and no general solution exists (if we are not to abandon these otherwise useful measures of differentiation). In an important article in this issue, Jinliang Wang (2015) shows that it is possible to identify whether the genetic markers in a given study are likely to give estimates of F_ST that are strongly affected by mutation. The proposed test is simple and elegant, and with it, molecular ecologists can determine whether the F_ST from their makers can be depended on for further inference about their species’ genome and the demographic forces which shaped its patterns.     

Low population genetic differentiation in the Orchidaceae: implications for the diversification of the family

A leading hypothesis for the immense diversity of the Orchidaceae is that skewed mating success and small, disjunct populations lead to strong genetic drift and switches between adaptive peaks. This mechanism is only possible under conditions of low gene flow that lead to high genetic differentiation among populations. We tested whether orchids typically exhibit high levels of population genetic differentiation by conducting a meta‐analysis to compare mean levels of population genetic differentiation (F_ST) between orchids and other diverse families and between rare and common orchids. Compared with other families, the Orchidaceae is typically characterized by relatively low genetic differentiation among populations (mean F_ST = 0.146) at allozyme loci. Rare terrestrial orchids showed higher population genetic differentiation than common orchids, although this value was still lower than the mean for most plant families. All lines of evidence suggest that orchids are typically characterized by low levels of population genetic differentiation, even in species with naturally disjunct populations. As such, we found no strong evidence that genetic drift in isolated populations has played a major role in the diversification of the Orchidaceae. Further research into the diversification of the family needs to unravel the relative roles of biotic and environmental selective pressures in the speciation of orchids.     

THE CYTOLOGY AND DERIVATION OF A TEMPERATURE-SENSITIVE MEIOTIC MUTANT IN THE FERN CERATOPTERIS

Meiotic mutants were obtained from an inbreeding program following a hybridization between two diploid species of the homosporous fern Ceratopteris. The mutants are characterized by high levels of asynapsis at high temperatures (27 C, 33 C) and by aberrant spindle function at low temperatures (18 C). Spore viabilities vary with temperature and are highest at 23 C. Occasional restitution during the first division results in the production of dyads of diploid spores, some of which are viable. The inbreeding program was characterized by the expression of high levels of apparent heterozygosity in spite of intragametophytic selfing. It appears that segregation within the inbreeding program was responsible for the production of the mutants. The apparent heterozgosity and segregation can be explained by a previously documented genetic system within the polyploid homosporous ferns.     

Genetic diversity and population structure in the outcrossing populations of Equisetum arvense and E. hyemale (Equisetaceae)

An allozyme examination was conducted to study the mating systems and genetic differentiation of populations of Equisetum arvense and E. hyemale. The study revealed that the rate of intragametophytic selfing in these homosporous pteridophytes is very low, i.e., on average 0.020 and 0.019, respectively, despite the potential hermaproditism and selfing of the gametophytes. Most populations consisted of numerous genotypes, and the average heterozygosities of E. arvense and E. hyemale equalled 0.092 and 0.134, respectively. The commonly observed excess of the heterozygote genotypes indicates that there are interclonal differences in the frequency of vegetative reproduction. The level of genetic divergence among populations was considerable even within a limited geographic area. It is suggested that the life history of Equisetum, characterized by the inefficiency of spore germination and gametophyte reproduction in noncolonizing situations, limits the level of gene flow and leads to a great genetic divergence between populations.