Bioinformatics database infrastructure for biotechnology research

Many databases are available that provide valuable data resources for the biotechnological researcher. According to their core data, they can be divided into different types. Some databases provide primary data, like all published nucleotide sequences, others deal with protein sequences. In addition to these two basic types of databases, a huge number of more specialized resources are available, like databases about protein structures, protein identification, special features of genes and/or proteins, or certain organisms. Furthermore, some resources offer integrated views on different types of data, allowing the user to do easy customized queries over large datasets and to compare different types of data.     

Short communication: rat's demand for group size

Social isolation compromises the welfare of rats. However, it is not clear how many rats should be housed together under laboratory conditions. Pair housing, sometimes recommended over group housing, may help avoid aggression and disease transmission. Female rats, however, showed the highest average demand for a group size of 6 (versus 1, 2, 4, and 12) when stocking density was maintained at 20 cm2/rat. This finding contributes to work suggesting that rats should be group housed. This article shows that further studies are required into the actual risks of disease and injury associated with group versus pair housing.     

Evolution of microalgal biotechnology: a survey of the European Patent Office database

Microalgal biotechnology is an innovative sector in the field of biotechnology and has evolved exponentially in the last 100 years. With the aim of finding out the current situation of the sector and its development, patents on microalgal biotechnology were surveyed in Espacenet, the European Patent Office database. The objective of this study was to identify the main trends in microalgae-related patents in the most commercial genera: Chlorella, Spirulina, Dunaliella, Haematococcus and model organism Chlamydomonas.     

Short communication: Decolourization of Crystal Violet by fungi

Crystal Violet was decolourized by Coriolus versicolor, Funalia trogii, Laetiporus sulphureus and Phanerochaete chrysosporium ME446 by 92%, 82%, 86% and 62%, respectively, over 3 days.     

Global transboundry disease politics: the OIE perspective

Reviewed in this paper are the steps for listing or de-listing of an aquatic animal disease, the current list of OIE listed aquatic animal diseases, and the reporting requirements for listed diseases by member countries. The current OIE listed aquatic animal diseases includes two diseases of amphibians, nine of fish, seven of mollusks, and eight of crustaceans. Of interest is the difference in importance of the listed diseases in each of the four groups of aquatic animals. In mollusks, parasitic diseases dominate the list, while in fish and crustaceans virus diseases are dominant. Whether a listed disease is due to a virus, fungus, bacterium or a parasite, the occurrence of the disease may adversely affect international trade among trading partners that have, or do not have, the listed disease. By its very nature, the international trade in terrestrial animals and aquatic animals, and their products, is influenced by national and international politics. When the occurrence of an OIE listed or emerging disease becomes an issue between trading partners, trade restrictions may be put in place and disputes are often a consequence. The World Trade Organization named the OIE as the reference body for animal health as it relates to international trade. This action recognized the 88 year history of the work by the OIE in disease control, listing of diseases, the development of the terrestrial and aquatic codes and the diagnostic manuals, and the prompt notification of members by the OIE of the occurrence of listed diseases. The intent of the WTO with this action was likely to minimize disease related trade disputes brought before the WTO.     

Pharmaceutical biotechnology: Chemical biotechnology: Web alert

A selection of World Wide Web sites relevant to papers published in this issue of Current Opinion in Biotechnology.     

The integrated web service and genome database for agricultural plants with biotechnology information

The National Agricultural Biotechnology Information Center (NABIC) constructed an agricultural biology-based infrastructure and developed a Web based relational database for agricultural plants with biotechnology information. The NABIC has concentrated on functional genomics of major agricultural plants, building an integrated biotechnology database for agro-biotech information that focuses on genomics of major agricultural resources. This genome database provides annotated genome information from 1,039,823 records mapped to rice, Arabidopsis, and Chinese cabbage.     

Pharmaceutical biotechnology, Chemical biotechnology: Web alert

A selection of World Wide Web sites relevant to papers published in this issue of Current Opinion in Biotechnology.     

Short signalling distances make plant communication a soliloquy

Plants respond to attack by herbivores or pathogens with the release of volatile organic compounds. Neighbouring plants can receive these volatiles and consecutively induce their own defence arsenal. This ‘plant communication’, however, appears counterintuitive when it benefits independent and genetically unrelated receivers, which may compete with the emitter. As a solution to this problem, a role for volatile compounds in within-plant signalling has been predicted. We used wild-type lima bean (Phaseolus lunatus) to quantify under field conditions the distances over which volatile signals move, and thereby determine whether these cues will mainly trigger resistance in other parts of the same plant or in independent plants. Independent receiver plants exhibited airborne resistance to herbivores or pathogens at maximum distances of 50 cm from a resistance-expressing emitter. In undisturbed clusters of lima bean, over 80 per cent of all leaves that were located around a single leaf at this distance were other leaves of the same plant, whereas this percentage dropped below 50 per cent at larger distances. Under natural conditions, resistance-inducing volatiles of lima bean move over distances at which most leaves that can receive the signal still belong to the same plant.     

Short communication: Mapping of two tumor suppressor genes in the pig

Abstract

Mutations in the breast cancer 1, early onset (BRCA1) gene confer an increased risk of breast and ovarian cancer in humans. The human MAD (mothers against decapentaplegic, Drosophila) homolog 4 (MADH4) locus is a target for deletion in pancreatic and other cancers. Given the role of the pig in biomedical studies, pig orthologs of BRCAl and MADH4 were identified and localized in the porcine genome.