土壤微生物多样性及其环境影响因子研究进展

土壤中存在丰富的微生物资源,不同土壤系统具有不同的微生物群落,微生物多样性既依赖于生态系统又服务于生态系统。本文从物种多样性、遗传多样性、生态类型多样性、功能多样性四个方面对土壤微生物多样性进行了新的诠释,总结论述了土壤微生物多样性与环境因子如土壤、植物群落和气候条件之间的关系,并对目前存在的问题和今后面临的挑战提出几点看法。     

Rimsulfuron in soil: Effect of persistence on growth and activity of microbial biomass at varying environmental conditions

The research was carried out toascertain the effect of rimsulfuron, a solfonylureaherbicide, on soil microbial biomass growth andactivity. Laboratory experiments were performed in asilty clay loam soil to relate changes of soilmicrobial biomass-C content and global hydrolyticactivity to the rimsulfuron persistence underdifferent conditions of temperature and soil humidity.The results showed that rimsulfuron persistencedepended significantly on temperature, while itremained almost unchanged by humidity changes. A rangeof half-life values from 3.5 to 14.8 days was found ina temperature range from 10 °C to 25 °C,with lower half-lives at higher temperature.Persistence data were processed with the VARLEACHmodel, in order to predict rimsulfuron persistenceunder different environmental conditions. On comparingtreated soils with untreated soil samples, decreasesin the microbial biomass-C content and increases inthe global hydrolytic activity were found to beconnected with rimsulfuron persistence at the variousexperimental conditions. These effects persisted fora short time and, they were evident earlier at highertemperature and more persistent at lower humidity.This behaviour is discussed in terms of rimsulfurontoxicity, with the consequent release of endocellularhydrolytic enzymes from the dead microorganisms. Anequation was derived to calculate the microbialbiomass-C content in response to the variation ofrimsulfuron persistence.     

微生物铁载体转运调控机制及其在环境污染修复中的应用

铁载体是微生物在胞内低铁浓度下分泌的螯合铁的物质,可分为儿茶酚盐类、氧肟酸盐类、羧酸盐类三大类。铁载体的转运分别受Fur、σ因子、群体感应信号这3种机制调控。近年来铁载体在石油污染修复、重金属污染修复和纸浆生物漂白等领域得到了应用,受到广泛关注。文中综述了铁载体的分类及其转运调控机制,以及铁载体在环境污染治理与修复中的应用,并展望了铁载体今后的应用前景。     

Biodegradation of starch–polyethylene films in soil and by microbial cultures

Among the starch-containing low density polyethylene films tested for biodegradation, films containing 30% starch showed maximum biodegradation leading to a loss of 6.3% in weight and 84.5% starch upon burial in a soil–compost mixture for 48weeks. Biodegradation of this film was accelerated by incubation with an acclimatized culture in a shake-flask showing 11.2% and 68.9% loss of weight and starch respectively, after only 6 weeks. FTIR and 13C NMR analysis revealed that the loss of starch in biodegraded films is accompanied by structural changes in polyethylene in terms of reduction in the peak area of polyethylene backbone and short chain branches.     

土壤管理措施及环境因素对土壤微生物多样性影响研究进展

本文综述了土壤管理措施及环境因素对土壤微生物多样性影响的研究进展,并介绍了土壤微生物多样性的研究方法,土壤微生物多样性包括微生物物种多样性、遗传多样性和生态多样性。传统上,土壤微生物群落的分析依赖于培养技术,但使用该技术只能培养和分离出一部分土壤微生物群落。现在国际上普遍使用Biolog分析、磷脂脂肪酸(PLFA)分析和核酸分析等多种现代技术研究和表征土壤微生物多样性。土壤微生物多样性受土壤管理措施和多种环境因素的影响。农药可能使土壤微生物多样性减少或改变其结构和功能;施有机肥有利于维持土壤微生物的多样性及活性;但在施用无机肥的影响上目前的报道有矛盾之处。农业土壤减少耕作可能增加微生物多样性和生物量;轮作可能比单一栽培耕作更有利于维持土壤微生物的多样性及活性。土壤微生物多样性也受土壤有机质、植被、季节变化等因素的影响,且通常遭受干旱、过度放牧、营养缺乏等的胁迫作用。     

Biodegradation of trichloroethylene and toluene by indigenous microbial populations in soil.

The biodegradation of trichloroethylene (TCE) and toluene, incubated separately and in combination, by indigenous microbial populations was measured in three unsaturated soils incubated under aerobic conditions. Sorption and desorption of TCE (0.1 to 10 micrograms ml-1) and toluene (1.0 to 20 micrograms ml-1) were measured in two soils and followed a reversible linear isotherm. At a concentration of 1 micrograms ml-1, TCE was not degraded in the absence of toluene in any of the soils. In combination, both 1 microgram of TCE ml-1 and 20 micrograms of toluene ml-1 were degraded simultaneously after a lag period of approximately 60 to 80 h, and the period of degradation lasted from 70 to 90 h. Usually 60 to 75% of the initial 1 microgram of TCE ml-1 was degraded, whereas 100% of the toluene disappeared. A second addition of 20 micrograms of toluene ml-1 to a flask with residual TCE resulted in another 10 to 20% removal of the chemical. Initial rates of degradation of toluene and TCE were similar at 32, 25, and 18 degrees C; however, the lag period increased with decreasing temperature. There was little difference in degradation of toluene and TCE at soil moisture contents of 16, 25, and 30%, whereas there was no detectable degradation at 5 and 2.5% moisture. The addition of phenol, but not benzoate, stimulated the degradation of TCE in Rindge and Yolo silt loam soils, methanol and ethylene slightly stimulated TCE degradation in Rindge soil, glucose had no effect in either soil, and dissolved organic carbon extracted from soil strongly sorbed TCE but did not affect its rate of biodegradation.     

Biodegradation kinetics of the nitramine explosive CL-20 in soil and microbial cultures

The cyclic nitramine explosive CL-20 (C₆H₆N₁₂O₁₂, 2,4,6,8,10,12-hexanitro-2,4,6,8,10,12 -hexaazaisowurtzitane) is a relatively new energetic compound which could be a persistent organic pollutant. To follow its biodegradation dynamics, CL-20 was added to soil alone or together with organic co-substrates and N-source and incubated under oxic and anoxic conditions. Without co-substrates, the CL-20 degradation was detectable only under anoxic conditions. The highest degradation rate was found under aerobic conditions and with the addition of co-substrates, succinate and pyruvate being more efficient than acetate, glucose, starch or yeast extract. When added to intact soil, CL-20 degradation was not affected by the N content, but in soil serially diluted with N-free succinate-mineral medium, the process became N-limited. About 40% of randomly selected bacterial colonies grown on succinate agar medium were able to decompose CL-20. Based on 16S rDNA gene sequence and cell morphology, they were affiliated to Pseudomonas, Rhodococcus, Ochrobactrum, Mycobacterium and Ralstonia. In the pure culture of Pseudomonas sp. MS-P grown on the succinate-mineral N(+) medium, the degradation kinetics were first order with the same apparent kinetic constant throughout growth and decline phases of the batch culture. The observed kinetics agreed with the model that supposes co-metabolic transformation of CL-20 uncoupled from cell growth, which can be carried out by several constitutive cellular enzymes with wide substrate specificity. The GenBank accession numbers for the 16S rRNA gene sequences obtained on this study are AY773005–AY773010. Pseudomonas sp. MS-P (=B-41417) was deposited with Agriculture Research Service Culture Collection, USA.     

Diffuse PAH contamination of surface soils: environmental occurrence,bioavailability, and microbial degradation

The purpose of this review is to recognize the scientific and environmental importance of diffuse pollution with polycyclic aromatic hydrocarbons (PAHs). Diffuse PAH pollution of surface soil is characterized by large area extents, low PAH concentrations, and the lack of point sources. Urban and pristine topsoils receive a continuous input of pyrogenic PAHs, which induces a microbial potential for PAH degradation. The significance of this potential in relation to black carbon particles, PAH bioaccessibility, microbial PAH degradation, and the fate of diffuse PAHs in soil is discussed. Finally, the state-of-the-art methods for future investigations of the microbial degradation of diffuse PAH pollution are reviewed.     

Biodegradation of BTE in soil by indigenous microbial populations with and without biogenic substrates

Degradation of benzene, toluene, and ethylbenzene (BTE) by microbial populations indigenous to the soil and populations proliferated from the indigenous using biogenic substrates were compared. The reaction system consisted of aerobic microcosms representing an unsaturated soil. Microcosms supplemented with glucose and citrate, when compared to the unsupplemented microcosms, showed increases in bacterial counts, but the overall degradation rates for B, T, or E were reduced in spite of shorter lag times. Both biogenic substrate supplements were non-beneficial for BTE degradation due largely to the preferential and healthy growth of the indigenous populations on the biogenic substrates, and thus the urgency of developing a favorable amount of BTE degraders was reduced.     

中原石油污染土壤原位微生物生态修复技术的应用

利用优化原位土著微生物菌群辅以物理和化学相结合的生态修复技术, 进行了河南中原油田石油残留污染土壤的野外修复应用研究。修复结果显示, 土壤中残留石油含量平均在2 898.25 mg/kg时, 经过99 d微生物生态修复技术的实施, 土壤中石油含量降解可达99%以上, 为油田区土壤石油残留污染的修复提供了技术方法和推广应用的可行性研究。     

南亚热带常绿阔叶林土壤微生物生物量碳氮年际动态特征及其影响因子

土壤微生物是土壤有机质和养分循环的主要驱动者,研究土壤微生物生物量碳氮变化、稳态特征及其对环境因子内在的长期响应机理具有重要意义。以南亚热带常绿阔叶林土壤为对象,对土壤微生物生物量碳和氮(MBC和MBN)、土壤有机碳(SOC)、总氮(TN)、总磷(TP)、可溶性碳(ROC)、速效氮(AN)、pH、土壤温度(ST)和土壤含水量(SWC)进行连续10年监测;应用方差分析、相关性和回归分析及稳态分析等探究MBC和MBN的年际变化和稳态特征及主要影响因素。研究结果表明:(1)旱季MBC和MBN含量分别在171.32-358.45和25.90-54.08 mg/kg区间波动,雨季分别在394.01-507.97和68.40-88.05 mg/kg区间波动;旱、雨季的MBC含量年际间变化显著(P < 0.05),但MBN含量仅在旱季变化显著(P < 0.05)。雨季MBC和MBN含量均显著高于旱季(P < 0.01),且雨季的MBC和MBN含量是旱季的2倍以上。(2)旱、雨季的MBC与MBN之间均呈显著正相关(P < 0.05)。在旱季,MBC和MBN均与ROC和AN含量显著正相关(P < 0.05),此外,MBN含量也与TP(P < 0.05)和SOC(P < 0.01)显著正相关。在雨季,仅SOC与MBN呈显著正相关(P < 0.05)。(3)在旱季,MBC含量变化主要受ROC(P < 0.05)和AN(P < 0.001)影响,MBN则受AN控制(P < 0.05)。在雨季,AN(P < 0.05)主导了MBC的变化,TP(P < 0.05)和SOC(P < 0.05)是MBN变异的主导因子。AN(P < 0.001)和SOC(P < 0.001)是旱、雨季土壤MBC和MBN变化的主导因子。(4)土壤MBC和MBC/MBN稳态指数在年际间均为绝对稳态型(P>0.05);雨季的MBN(P=0.685)为绝对稳态型,但旱季为非稳态(P < 0.01,H > 1)。雨季微生物熵显著高于旱季(P < 0.01),表明土壤有机质质量及养分利用效率更高。综上,MBC和MBN含量受季节更替显著影响,且主要受土壤SOC和AN的影响;受旱季水分限制,MBN的稳态更差。     

Biodegradation of DDT by stimulation of indigenous microbial populations in soil with cosubstrates

Stimulation of native microbial populations in soil by the addition of small amounts of secondary carbon sources (cosubstrates) and its effect on the degradation and theoretical mineralization of DDT [l,l,l-trichloro-2,2-bis(p-chlorophenyl)ethane] and its main metabolites, DDD and DDE, were evaluated. Microbial activity in soil polluted with DDT, DDE and DDD was increased by the presence of phenol, hexane and toluene as cosubstrates. The consumption of DDT was increased from 23 % in a control (without cosubstrate) to 67, 59 and 56 % in the presence of phenol, hexane and toluene, respectively. DDE was completely removed in all cases, and DDD removal was enhanced from 67 % in the control to ~86 % with all substrates tested, except for acetic acid and glucose substrates. In the latter cases, DDD removal was either inhibited or unchanged from the control. The optimal amount of added cosubstrate was observed to be between 0.64 and 2.6 mg C $ {\text{g}}^{ - 1}_{\text{dry soil}} $ . The CO₂ produced was higher than the theoretical amount for complete cosubstrate mineralization indicating possible mineralization of DDT and its metabolites. Bacterial communities were evaluated by denaturing gradient gel electrophoresis, which indicated that native soil and the untreated control presented a low bacterial diversity. The detected bacteria were related to soil microorganisms and microorganisms with known biodegradative potential. In the presence of toluene a bacterium related to Azoarcus, a genus that includes species capable of growing at the expense of aromatic compounds such as toluene and halobenzoates under denitrifying conditions, was detected.     

Effects of phytolithic rice-straw biochar,soil buffering capacity and pH on silicon bioavailability

Plant and Soil - We examined the importance of litter quality and microclimate on early-stage litter mass loss, analysed the importance of interactions among environmental factors in determining...     

Biodegradation of phenanthrene by the indigenous microbial biomass in a zinc amended soil

AIMS: To study the effect of zinc on the biodegradation of phenanthrene by the microbial biomass in soil. METHODS AND RESULTS: Uncontaminated soil was amended with zinc and phenanthrene as single or co-contaminants, and microbial metabolic activity was measured using an intracellular dehydrogenase enzyme bioassay over 37 days. Contaminants were amended at optimum, action and double the action level specified in 'The New Dutch List' (Ministry of Housing, Spatial Planning and Environment, the Netherlands, 2000). Microbial activity in soils with zinc or phenanthrene alone indicated the presence of tolerant, albeit inhibited soil micro-organisms. A zinc concentration at the optimum level of 140 mg kg(-1) in the co-contaminated soil (phenanthrene at 40 mg kg(-1)) resulted in marginal stimulation of the rate of phenanthrene biodegradation. However, Zn2+ concentrations at the action and double the action level of zinc (720 and 1440 mg kg(-1)) inhibited phenanthrene degradation. CONCLUSIONS: Biodegradation of phenanthrene in soils co-contaminated with zinc at concentrations above the action value is impeded. SIGNIFICANCE AND IMPACT OF THE STUDY: Bioremediation efforts to remove polycyclic aromatic hydrocarbon in zinc co-contaminated soils are likely to be constrained.     

Biodegradation of alpha- and beta-hexachlorocyclohexane in a soil slurry under different redox conditions

Aerobic conditions proved to be best for the microbiol conversion of alpha-hexachlorocyclohexane (alpha-HCH) in a soil slurry. The dry soil contained 400 mg of alpha-HCH per kg. This xenobiotic compound was mineralized within about 18 days at an initial rate of 23 mg/kg of soil per day by the mixed native microbial population of the soil. The only intermediate that was detected during breakdown was pentachlorocyclohexene, which was detected at very small concentrations. Alpha-HCH was also bioconverted under methanogenic conditions. However, a rather long acclimation period (about 30 days) was necessary before degradation started, at a rate of 13 mg/kg of soil per day. Mass balance calculations showed that about 85% of the initial alpha-HCH that was present was converted to monochlorobenzene, 3,5-dichlorophenol, and a trichlorophenol isomer, possibly 2,4,5-trichlorophenol. Under both denitrifying and sulfate-reducing conditions, no significant bioconversion of alpha-HCH was observed. The beta isomer of HCH was recalcitrant at all of the four redox conditions studied. We propose that the specific spatial chloride arrangement of the beta isomer is responsible for its stability. The results reported here with complex soil slurry systems showed that alpha-HCH is, in contrast to the existing data in the literature, best degraded biologically in the presence of oxygen.     

Effects of nutritional input and diesel contamination on soil enzyme activities and microbial communities in antarctic soils

Pollution of Antarctic soils may be attributable to increased nutritional input and diesel contamination via anthropogenic activities. To investigate the effect of these environmental changes on the Antarctic terrestrial ecosystem, soil enzyme activities and microbial communities in 3 types of Antarctic soils were evaluated. The activities of alkaline phosphomonoesterase and dehydrogenase were dramatically increased, whereas the activities of β-glucosidase, urease, arylsulfatase, and fluorescein diacetate hydrolysis were negligible. Alkaline phosphomonoesterase and dehydrogenase activities in the 3 types of soils increased 3- to 10-fold in response to nutritional input, but did not increase in the presence of diesel contamination. Consistent with the enzymatic activity data, increased copy numbers of the phoA gene, encoding an alkaline phosphomonoesterase, and the 16S rRNA gene were verified using quantitative real-time polymerase chain reaction. Interestingly, dehydrogenase activity and 16S rRNA gene copy number increased slightly after 30 days, even under diesel contamination, probably because of adaptation of the bacterial population. Intact Antarctic soils showed a predominance of Actinobacteria phylum (mostly Pseudonorcarida species) and other phyla such as Proteobacteria, Chloroflexi, Planctomycetes, Firmicutes, and Verrucomicrobia were present in successively lower proportions. Nutrient addition might act as a selective pressure on the bacterial community, resulting in the prevalence of Actinobacteria phylum (mostly Arthrobacter species). Soils contaminated by diesel showed a predominance of Proteobacteria phylum (mostly Phyllobacterium species), and other phyla such as Actinobacteria, Bacteroidetes, Planctomycetes, and Gemmatimonadetes were present in successively lower proportions. Our data reveal that nutritional input has a dramatic impact on bacterial communities in Antarctic soils and that diesel contamination is likely toxic to enzymes in this population.     

Biogeochemistry of microbial mats under Precambrian environmental conditions: a modelling study

Microbial mats have arguably been the most important ecosystem on Earth over its 3.5 Gyr inhabitation. Mats have persisted as consortia for billions of years and occupy some of Earth's most hostile environments. With rare exceptions (e.g. microbial mats developed on geothermal springs at Yellowstone National Park, USA), today's mats do not exist under conditions analogous to Precambrian habitats with substantially lower oxygen and sulphate concentrations. This study uses a numerical model of a microbial mat to investigate how mat composition in the past might have differed from modern mats. We present a numerical model of mat biogeochemistry that simulates the growth of cyanobacteria (CYA), colourless sulphur bacteria (CSB), and purple sulphur bacteria (PSB), with sulphate‐reducing bacteria (SRB) and heterotrophic bacteria represented by parameterized sulphate reduction rates and heterotrophic consumption rates, respectively. Variations in the availability of light, oxygen, sulphide, and sulphate at the upper boundary of the mat are the driving forces in the model. Mats with remarkably similar biomass and chemical profiles develop in models under oxygen boundary conditions ranging from 2.5 × 10^?13 to 0.25 mm and sulphate boundary concentrations ranging from 0.29 to 29 mm , designed to simulate various environments from Archean to modern. The modelled mats show little sensitivity to oxygen boundary conditions because, independent of the overlying oxygen concentrations, cyanobacterial photosynthesis creates similar O₂ concentrations of 0.45–0.65 mm in the upper reaches of the mat during the photoperiod. Varying sulphate boundary conditions have more effect on the biological composition of the mat. Sulphide generated from sulphate reduction controls the magnitude and distribution of the PSB population, and plays a part in the distribution of CSB. CSB are the most sensitive species to environmental change, varying with oxygen and sulphide.     

Effects of environmental conditions on microbial proteolysis in a pork myofibril model system

P.M. KENNEALLY, N.G. FRANSEN, H. GRAU, E.E. O'NEILL & E.K. ARENDT.1999.A number of bacterial strains used for meat fermentations were screened for proteolytic activity. A strain of Micrococcus which was found to be proteolytic was evaluated for the effects of environmental conditions on its proteolytic activity against pork myofibrillar proteins using response surface methodology. Three strains of micrococci were also tested for the ability to produce free amino acids from pork myofibrils. Analysis of the effects of environmental conditions showed that proteolytic activity would be minimal under conditions normally found in fermented sausages, thereby suggesting that proteolysis in these products is largely due to endogenous meat enzymes. The three strains of micrococci were shown to produce free amino acids from pork myofibrils, thereby demonstrating the presence of peptidase activity in these strains.     

Biodegradation of alpha- and beta-hexachlorocyclohexane in a soil slurry under different redox conditions.

Aerobic conditions proved to be best for the microbiol conversion of alpha-hexachlorocyclohexane (alpha-HCH) in a soil slurry. The dry soil contained 400 mg of alpha-HCH per kg. This xenobiotic compound was mineralized within about 18 days at an initial rate of 23 mg/kg of soil per day by the mixed native microbial population of the soil. The only intermediate that was detected during breakdown was pentachlorocyclohexene, which was detected at very small concentrations. Alpha-HCH was also bioconverted under methanogenic conditions. However, a rather long acclimation period (about 30 days) was necessary before degradation started, at a rate of 13 mg/kg of soil per day. Mass balance calculations showed that about 85% of the initial alpha-HCH that was present was converted to monochlorobenzene, 3,5-dichlorophenol, and a trichlorophenol isomer, possibly 2,4,5-trichlorophenol. Under both denitrifying and sulfate-reducing conditions, no significant bioconversion of alpha-HCH was observed. The beta isomer of HCH was recalcitrant at all of the four redox conditions studied. We propose that the specific spatial chloride arrangement of the beta isomer is responsible for its stability. The results reported here with complex soil slurry systems showed that alpha-HCH is, in contrast to the existing data in the literature, best degraded biologically in the presence of oxygen.