Reference frame for rapid visual processing of line orientation.

Detection of a uniquely oriented line element in a background field of uniformly oriented line elements depends on the orientation of the background field. Is the orientational reference frame for this anisotropy entirely dependent on the orientations of structures outside the line-element display, the spatial regularity of the stimulus elements, and the direction of gravity? The effects of these potential cues were investigated in target-detection experiments with brief displays. The anisotropy was found whether or not gravitational or visual cues defined an orientational reference frame. Stimulus orientation may be coded with respect to the retina or body axis in rapid visual processing.     

Short-range limitation on detection of feature differences

We studied the ability of observers to detect the presence of a clearly visible line segment against a background of line segments of different orientation. As we increase the number (density) of these background lines, we find that detectability does not behave monotonically. Adding a small number of background lines decreases detectability but if adjacent line segments are permitted to fall in close range, a further increase of background lines improves performance which eventually reaches a constant level. This suggests that detection of feature differences involves a short-range process. The range of this process is about two degrees or twice the length of the line segments used. Thus texture-gradients between different elements are only formed if the distance between these elements is not much larger than the average element size.     

Automated muscle wrapping using finite element contact detection

Realistic muscle path representation is essential to musculoskeletal modeling of joint function. Algorithms predicting these muscle paths typically rely on a labor intensive predefinition of via points or underlying geometries to guide wrapping for given joint positions. While muscle wrapping using anatomically precise three-dimensional (3D) finite element (FE) models of bone and muscle has been achieved, computational expense and pre-processing associated with this approach exclude its use in applications such as subject-specific modeling. With the intention of combining advantageous features of both approaches, an intermediate technique relying on contact detection capabilities of commercial FE packages is presented. We applied the approach to the glenohumeral joint, and validated the method by comparison against existing experimental data. Individual muscles were modeled as a straight series of deformable beam elements and bones as anatomically precise 3D rigid bodies. Only the attachment locations and a default orientation of the undeformed muscle segment were pre-defined. The joint was then oriented in a static position of interest. The muscle segment free end was then moved along the shortest Euclidean path to its origin on the scapula, wrapping the muscle along bone surfaces by relying on software contact detection. After wrapping for a given position, the resulting moment arm was computed as the perpendicular distance from the line of action vector to the humeral head center of rotation.This approach reasonably predicted muscle length and moment arm for 27 muscle segments when compared to experimental measurements over a wide range of shoulder motion. Artificial via points or underlying contact geometries were avoided, contact detection and multiobject wrapping on the bone surfaces were automatic, and low computational cost permitted wrapping of individual muscles within seconds on a standard desktop PC. These advantages may be valuable for both general and subject-specific musculoskeletal modeling.     

Multiple groups of orientation-selective visual mechanisms underlying rapid orientated-line detection.

Visual search for an edge or line element differing in orientation from a background of other edge or line elements can be performed rapidly and effortlessly. In this study, based on psychophysical measurements with ten human observers, threshold values of the angle between a target and background line elements were obtained as functions of background-element orientation, in brief masked displays. A repeated-loess analysis of the threshold functions suggested the existence of several groups of orientation-selective mechanisms contributing to rapid orientated-line detection; specifically, coarse, intermediate and fine mechanisms with preferred orientations spaced at angles of approximately 90 degrees, 35 degrees, and 10 degrees-25 degrees, respectively. The preferred orientations of coarse and some intermediate mechanisms coincided with the vertical or horizontal of the frontoparallel plane, but the preferred orientations of fine mechanisms varied randomly from observer to observer, possibly reflecting individual variations in neuronal sampling characteristics.     

Detection of a gabor patch superimposed on an illusory contour

Interactions between visual stimuli have been found to be specific to the spatial frequency, orientation and phase of the interacting stimuli. We asked if there are any interactions between luminance-defined Gabor patches and Kanizsa-type illusory contours. In psychophysical experiments we studied whether induction of a vertical illusory line affects detection thresholds for a Gabor patch superimposed on this line and whether these effects depend on the orientation, spatial frequency and phase of the Gabor elements. Employing a 2AFC method with a staircase procedure we measured contrast detection thresholds and varied the orientation, spatial frequency and phase of the test Gabor patch and the separation between the two pacmen in four experimental series. The results show that in a situation where the two inducers generate perception of an illusory line, the contrast detection of the Gabor patch is facilitated relative to a control condition where the rotated pacmen do not induce illusory contours. This facilitation was more pronounced for test Gabor signals that were collinear to the illusory line, but the observer's performance was not altered by changes in the spatial frequency or phase of the Gabor stimuli. With increasing spatial separation of the two pacmen (and, consequently, with a decreasing support ratio), the difference between performance in the test and control conditions diminished. From the data obtained we cannot infer that we have measured some neural interactions between Gabor patches and Kanizsa-type illusory contours, and nor can we draw a unique conclusion about what causes the facilitation of detection of the test Gabor patch in the experimental situation that allows induction of the illusory line. We discuss possible mechanisms of the facilitation, such as contextual influences or a reduction of uncertainty about spatial location of the test Gabor patch.     

SIEVE-PORE DEVELOPMENT IN SOME LEPTOSPORANGIATE FERNS

Sieve-pore development was examined in four species of leptosporangiate ferns: Phlebodium aureum, Platycerium bifurcatum, Pityrogramma calomelanos, and Regnellidium diphyllum. In all four species, sieve-pore development is initiated with the formation of a barrel-shaped periplasmodesmatal region—bounded by a narrow, electron-dense band—around the prepore plasmodesma. This phase is followed by the deposition of callose, or of a calloselike substance, around the prepore plasmodesma. With deposition of this substance, the periplasmodesmatal region is no longer discernible, but an electron-dense band continues to border the pore site. Perforation of the pore site involves removal of the calloselike substance and widening of the plasmodesmatal canal, both processes occurring more or less uniformly along the entire length of the pore site. During widening of the plasmodesmatal canal, numerous membranous elements appear within the pore. The number of membranous elements within the pore appears to decrease with increasing age of the sieve element. The location of feeding aphid (Myzus persicae) mouth-parts indicates that the conducting sieve elements in Pellaea viridis are mature cells interconnected by membrane-containing, callose-free sieve pores.     

Collinear interactions and contour integration

The visibility of a local target is influenced by the global configuration of the stimulus. Collinear configurations are a specific case in which facilitation or suppression of the target has been found to be dependent on the contrast threshold of the target. The role of collinear interactions in perceptual grouping, especially in contour integration, is still controversial. In the current study, the role of collinear interactions in noise was investigated using experimental conditions similar to those utilized in studies of contour integration. The contrast detection paradigm in the presence of similar Gabor elements presented in the background was used. The results show that contrast detection threshold of the target alone is increased (suppression) when it is embedded in randomly oriented background elements. However, when the target is flanked by two collinear Gabor elements, the target is facilitated even at higher target contrast levels. Facilitation is not found for orthogonal configurations. The results suggest that the response to a local element in a contour is modified by lateral facilitative and suppressive inputs from elements comprising the smooth contour and randomly oriented background elements, respectively. Thus, detection of elements along a contour should be considered as integration of global neuronal activity rather than as the output of local and individual neurons.     

The Maternally Inherited Regulation of P Elements in Drosophila Melanogaster Can Be Elicited by Two P Copies at Cytological Site 1a on the X Chromosome

Two P elements, inserted at the cytological site 1A on an X chromosome from an Drosophila melanogaster natural population (Lerik, USSR), were isolated by genetic methods to determine if they are sufficient to cause the P cytotype, the cellular condition that regulates the P family of transposable element. The resulting "Lerik P(1A)" line (abbreviated "Lk-P(1A)") carries only one P element in situ hybridization site but genomic Southern analysis indicates that this site contains two, probably full length, P copies separated by at least one EcoRI cleavage site. Because the Lk-P(1A) line shows some transposase activity, at least one of these two P elements is autonomous. The Lk-P(1A) line fully represses germline P element activity as judged by the GD sterility and snw hypermutability assays; this result shows that the P cytotype can be elicited by only two P element copies. However, the Lk-P(1A) line does not fully repress delta 2-3(99B) transposase activity in the soma, although it fully represses delta 2-3(99B) transposase activity in the germline (delta 2-3(99B) is an in vitro modified P element that produces a high level of transposase activity in both the germline and the soma). The germline regulatory properties of the Lk-P(1A) line are maternally transmitted, even when the delta 2-3(99B) element is used as the source of transposase. By contrast, the partial regulation of delta 2-3(99B) somatic activity is chromosomally inherited. These results suggest that the regulatory P elements of the Lk-P(1A) line are inserted near a germline-specific enhancer.     

The effect of contour closure on shape perception

We studied psychophysically whether 'contour closure' enhances the accuracy of shape perception. Stimulus configurations (presented on a blank background) always consisted of identical pattern elements, but the positions of the local elements were varied: the global contour shape either contained closure or not. In the first two stimulus conditions (Closure), the oriented pattern elements (Gabor patches) formed a 'closed' rectangular shape composed of either four long lines or four corners. In the third condition (No closure), the global shape was composed of the four corners, but they were outward oriented, and hence they did not form the outline of a closed contour. We measured the precision of shape perception using a discrimination task in which observers judged the aspect ratio of the outline shape i.e. whether the rectangular shape was tall or wide. We found that: (i) shape discrimination was better (more precise) for Closed contours than for Non-closed contours, i.e. the aspect ratio discrimination thresholds were lower for the Closed than Non-closed configurations. The improved performance could not be explained by differences in visibility of the local elements in the two conditions. (ii) For closed contours, shape discrimination was more precise when the local elements were aligned with the global shape, than when the local elements were orthogonal to it.     

A hemicentric inversion in the maize line knobless Tama flint created two sites of centromeric elements and moved the kinetochore-forming region

A maize line, knobless Tama flint (KTF), was found to contain a version of chromosome 8 with two spatially distinct regions of centromeric elements, one at the original genetic position and the other at a novel location on the long arm. The new site of centromeric elements functions as the kinetochore-forming region resulting in a change of arm length ratio. Examination of fluorescence in situ hybridization markers on chromosome 8 revealed an inversion between the two centromere sites relative to standard maize lines, indicating that this chromosome 8 resulted from a hemicentric inversion with one breakpoint approximately 20 centi-McClintocks (cMc) on the long arm (20% of the total arm length from the centromere) and the other in the original cluster of centromere repeats. This inversion moved the kinetochore-forming region but left the remainder of the centromere repeats. In a hybrid between a standard line (Mo17) and KTF, both chromosome 8 homologues were completely synapsed at pachytene despite the inversion. Although the homologous centromeres were not paired, they were always correctly oriented at anaphase and migrated to opposite poles. Additionally, recombination on 8L was severely repressed in the hybrid.     

A task-based evaluation of PEM detector element size

Positron Emission Mammography (PEM) is a planar imaging method that utilizes arrays of discrete detector elements for the detection of radiotracer-avid breast cancer. In this investigation we have systematically studied, through computer simulations, the effect of detector element size (width and length) on breast lesion detection and localization tasks. The contrast-to-noise ratios of the spheres simulating breast lesions were calculated as a function of detector element dimension to gauge detectability. System resolution (fwhm) across the field-of-view was used as the metric for the localization task. For both tasks, individual detector elements of lyso with cross sectional dimensions of 2×2 mm (96×72 element arrays, step 2.1mm) and 3×3mm (65×49 element arrays, step 3.1 mm), and lengths of 10,15 and 20 mm were simulated. The results revealed that narrower pixel dimensions reduced the partial volume effect, while the thicker pixels increased pixel sensitivity, thus reducing noise per pixel and increasing the contrast-to-noise ratio.     

Proliferation and copy number variation of BEL-like long terminal repeat retrotransposons within the Diabrotica virgifera virgifera genome

The proliferation of retrotransposons within a genome can contribute to increased size and affect the function of eukaryotic genes. BEL/Pao-like long-terminal repeat (LTR) retrotransposons were annotated from the highly adaptable insect species Diabrotica virgifera virgifera, the Western corn rootworm, using survey sequences from bacterial artificial chromosome (BAC) inserts and contigs derived from a low coverage next-generation genome sequence assembly. Eleven unique D. v. virgifera BEL elements were identified that contained full-length gag–pol coding sequences, whereas 88 different partial coding regions were characterized from partially assembled elements. Estimated genome copy number for full and partial BEL-like elements ranged from ~ 8 to 1582 among individual contigs using a normalized depth of coverage (DOC) among Illumina HiSeq reads (total genome copy number ~ 8821). BEL element copy number was correlated among different D. v. virgifera populations (R² = 0.9846), but individual element numbers varied ≤ 1.68-fold and the total number varied by ~ 527 copies. These data indicate that BEL element proliferation likely contributed to a large genome size, and suggest that differences in copy number are a source of genetic variability among D. v. virgifera.     

The contribution of the cruciate ligaments to the load-displacement characteristics of the human knee joint

Human knee specimens were subjected to anterior-posterior, medial-lateral, varus-valgus, and torsional displacement tests. Loads were recorded for the intact joint and for the joint with all soft tissues cut except for the cruciate ligaments. The effect of condylar interference was determined for anterior-posterior, medial-lateral, and torsional displacements. The variation in load with flexion angle was considerable for medial-lateral (0-90-deg flexion) displacements, and less for varus-valgus (0-45-deg flexion) displacements. The cruciates were found to carry almost the entire anterior-posterior load; they carried a significant percentage of the medial-lateral load which varied considerably with flexion angle. A small, but not insignificant percentage of the varus-valgus load was carried by the cruciates and the variations with flexion angle were small. In torsion, the cruciates resisted only internal rotation. In the tested displacement ranges, condylar interference had a small effect on the medial-lateral load but did not affect anterior-posterior or torsional loads.     

A cluster of repetitive elements within a 700 base pair region in the mouse genome

Approximately 39% of the clones from a BALB/c mouse genomic library hybridized with polyadenylated cytoplasmic RNA extracted from anemic mouse spleen. The DNA sequence of a portion of one such clone revealed the presence of three repetitive sequence elements within a 700 bp span. All three elements contain putative RNA polymerase III control regions oriented in the same direction and oligo(dA) tracts at their 3' ends. The first element is a member of the murine B1 family. A comparison of this element with other B1 family members indicates that the B1 family can be divided into two subclasses based on commonly held base changes and deletions. The second element within this 700 bp region may be a member of a new murine Alu family. Its structure is analogous to other murine Alu-equivalent sequences with respect to overall length, the presence of a 3' oligo(dA) tract and putative RNA polymerase III control regions. The third element is a murine type 2 Alu-equivalent sequence.     

Changes in element concentration and distribution in breast-milk fractions of a healthy lactating mother

Daily changes in components of breast milk with number of days of lactation after delivery were demonstrated by determining concentrations and distributions of several elements simultaneously. Concentrations of calcium, copper, magnesium, phosphorus, sulfur, and zinc were determined simultaneously by inductively coupled argon plasma-atomic-emission spectrometry (ICP) for whole milk and milk fractions (skimmed milk and whey) collected from 2 to 196 d postpartum from a healthy lactating mother. Calcium and phosphorus concentrations increased in transitional milk. With days postpartum, the other elements decreased from the highest concentrations in colostrum milk, the modes of decrease being characteristic for each element. Distributions of copper, iron, phosphorus, sulfur, and zinc in whey were determined on a gel-filtration column by HPLC with ICP detection (HPLC-ICP method). Distributions of the five elements and absorbance peaks at 254 and 280 nm changed dramatically day by day at the beginning (colostrum milk), resulting in constant distributions after 30 d (mature milk). These results suggest the important roles of daily changing constituents in breast milk, especially in colostrum milk, in the nutrition of the newborn. Several element peaks on a gelfiltration column were identified by comparison with standard samples.     

Development of a laboratory line (SRI line) derived from the wild house musk shrew, Suncus murinus, indigenous to Sri Lanka

Five male and 9 female house musk shrews (Suncus murinus) captured in Koralawella, Sri Lanka were acquired by our laboratory. One male and 3 females alone contributed to the development of a new laboratory line (SRI line). The SRI line has been maintained as a closed breeding colony consisting of more than 40 shrews. Gestation period and litter size at birth averaged 31.2 days (43 cases) and 2.4 (43 litters), respectively. The SRI line shrews were uniformly covered with light gray fur. The body weight and total length of adult shrews averaged 72.9 g and 23.9 cm in males, and 49.6 g and 21.0 cm in females. These data indicate a body size intermediate between BAN line shrews originating from Bangladesh and Nag or OKI line shrews from Japan. The SRI shrews are also characterized by having 30 chromosomes in diploid, being the smallest number in the entire species, whereas the otherlines (Nag, OKI and BAN) all have 40 chromosomes.     

Trace element content in fingernails and hair of a nonindustrialized US control population

The concentrations of 17 elements in the nail and hair of 117 subjects from a nonindustrialized environment were determined by instrumental neutron activation analysis (INAA). A new method of statistical treatment that allows for more meaningful use of detection limit values was used to process the concentration data. Geometric means and standard errors are presented for each element, along with a summary of the effects of age, sex, and treatment on the concentration of each element. For nails, these data represent the first comprehensive study for several important elements. Correlations for each element between hair and nail were determined. With few exceptions, concentrations of nonessential trace elements were positively correlated in hair and nail, whereas concentrations of essential elements showed no correlations. The factors affecting concentrations and control levels must be considered in studying alterations in disease states.