Evolution of biometric and life‐history traits in lizards (Gallotia) from the Canary Islands

The aim was to study as to how biometric and life‐history traits of endemic lacertids in the Canary Islands (genus Gallotia) may have evolved, and possible factors affecting the diversification process of this taxon on successively appearing islands have been deduced. To that end, comparative analyses of sexual dimorphism and scaling of different body, head and life‐history traits to body size in 10 species/subspecies of Gallotia have been carried out. Both Felsenstein's independent contrasts and Huey and Bennett's ‘minimum evolution’ analyses show that male and female snout‐vent length (SVL) changed proportionally (sexual size dimorphism not changing with body size) throughout the evolution of these lizards and all within‐sex biometric traits have changed proportionally to SVL. Life‐history traits (size at sexual maturity, clutch size, hatchling SVL and mass, and life span) are highly correlated with adult female body size, the first two being the only traits with a positive allometry to female SVL. These results, together with the finding that the slope of hatchling SVL to female SVL regression was lower than that of SVL at maturity to female SVL, indicates that larger females reach maturity at a larger size, have larger clutches and, at the same time, have relatively smaller hatchlings than smaller females. There was no significant correlation between any pair of life‐history traits after statistically removing the effect of body size. As most traits changed proportionally to SVL, the major evolutionary change has been that of body size (a ca. threefold change between the largest and the smallest species), that is suggested to be the effect of variable ecological conditions faced by founder lizards in each island.     

Numerical analyses of selected microencrusters from the Cipit boulders of the St Cassian Formation (Dolomites,NE Italy): palaeoecological implications

The ecological relationships among six microencruster species from the Cipit boulders of the St Cassian Formation (Ladinian–Carnian of the Dolomites, NE Italy) were studied in detail. 112 thin sections in postcard format (10 × 15 cm) and in 7.5 × 10 cm from the localities Alpe di Specie and Misurina were taken into account. Initially, twelve microencruster species were found: Koskinobullina socialis, Terebella lapilloides, Tubiphytes obscurus, Baccanella floriformis, Reptonoditrypa cautica, Plexoramea cerebriformis, Ladinella porata, Microtubus communis, Pseudorothpletzella schmidi, Alpinophragmium perforatum, Planiinvoluta sp and Tethysocarnia cautica. A phenetic algorithm combining three cluster analyses in R‐mode (UPGMA, WPGMA and nearest neighbour) as well as two indices (Jaccard and Bray–Curtis) was performed on all samples. Six microencruster species – grouped in three pairs – were found to have high Jaccard and low Bray–Curtis values at all algorithms. These pairs are represented by Koskinobullina socialis – Pseudorothpletzella schmidi, Terebella lapilloides – Tubiphytes obscurus and Reptonoditrypa cautica – Baccanella floriformis, and were clearly recognizable as robust branches in all phenograms. A further index (Simpson's similarity index) was included successfully in the algorithm in order to sustain the robustness of these phena. This method proved to render reliable results and could be successfully applied in all reef and reef‐like fossil ‘communities’, with the aim of establishing the palaeoecological implications and the specific constraints of selected microencrusters.     

A species well travelled – the Dodonaea viscosa (Sapindaceae) complex based on phylogenetic analyses of nuclear ribosomal ITS and ETSf sequences

Aim To determine the evolutionary history of the widely studied, cosmopolitan polymorphic species Dodonaea viscosa (hop bush, varnish tree). Location All continents except Antarctica, extending from 44° S (in the South Island of New Zealand) to 33° N (in California and Arizona). Methods For 50 samples across the worldwide distribution, Bayesian analyses of nuclear ribosomal transcribed spacers (ITS 1, ITS 2 and partial ETS) were performed. The alignment was partitioned by secondary structure and analysed using separate models of sequence evolution for each spacer’s stem and loop partition. Bayesian relaxed‐clock estimations of divergence times were used to investigate the tempo of the transoceanic dispersal history of Dodonaea viscosa. Results The widely distributed Dodonaea viscosa evolved in Australia from its most recent common ancestor in the Late Pliocene to Early Pleistocene and subsequently split into two distinct, geographically based, intraspecific lineages. There are a number of regional subclades that are also supported by specific molecular elements. Main conclusions Dodonaea viscosa is not an old lineage, as has often been speculated based primarily on its vast distribution. It diverged from its most recent common ancestor and subsequently dispersed and established around the world within the last 2 Myr. Two distinct lineages within Dodonaea viscosa, which have been shaped by Quaternary climatic change, have separate dispersal histories. The molecular investigations have identified that, although there are least two evolutionary lineages within the complex, they do not correlate with any distinct morphological subunits. It is proposed that Dodonaea viscosa (including D. biloba and D. procumbens) be recognized as an ochlospecies.     

Length–weight relationships for freshwater fish species from the Pantanal of the Negro River,Brazil

The present study describes the length‐weight relationships (LWRs) of 28 species captured in Santa Virgínia Bay, in the Pantanal of the Negro River, Mato Grosso do Sul State, Brazil, over 3 years (1999 to 2001). The study provides the first references on LWRs for thirteen of these species.     

Length–weight and length–length relationships of 139 Indo‐Pacific fish species (Teleostei) from the Davao Gulf,Philippines

Length–weight relationships (LWRs) of 139 coral reef and pelagic fish species (representing 34 fish families) were calculated based on 3806 individuals measured at local fish markets near the Davao Gulf in the southern Philippines during weekly visits between March 2009 and July 2011, as well as in June 2012. Fishes were caught with a variety of fishing methods, corroborated by abrasions and injuries. Forty‐seven of 139 LWRs were firstly reported and new to science. The mean slope b of the LWRs was 3.035, indicating that the majority of studied species followed isometric growth. Standard length – total length relationships were calculated for all measured fish species. Additionally, standard length – fork length relationships are presented for 108 species. Moreover, fifteen new records of maximum fish length and weight are reported.     

Length–weight relationships for three freshwater fish species from the Pengxi River (a tributary of the Yangtze River,China)

This study determined the length–weight relationships of three freshwater fish species [Culter oxycephaloides (Kreyenberg & Pappenheim, 1908), Squalidus argentatus (Sauvage & Dabry de Thiersant, 1874), Rhodeus sinensis (Günther, 1868)] from Pengxi River, a tributariy of Yangtze River of China. Fish were collected during 2016 using drift gill nets (mesh size 1, 2 and 3 cm) and cage net (0.5 cm mesh size). For Culter oxycephaloides had no previous length–weight estimates were reported in the science literature. For Squalidus argentatus the present estimate includes a new maximum total length while for Rhodeus sinensis our study confirms the only existing LWR estimate quite well.     

Length–weight relationships of three freshwater fish species from the Kameng River (Brahmaputra basin) in Arunachal Pradesh,northeast India

Length–weight relationships (LWRs) for three fish species, Psiloryhnchus homaloptera Hora & Mukherji, 1935, Pseudecheneis sulcata (McClelland, 1842) and Devario aequipinnatus (McClelland, 1839), from the Kameng River in Arunachal Pradesh, India were estimated from August 2016 to October 2017. Fishes were collected seasonally using cast nets (2.5 m, 1.2 cm) and electrofishing device (Safari Surveyor, 12 V 7 amp). The b values in the LWRs were determined as 2.98, 2.93 and 2.72 for P. homaloptera, P. sulcata and D. aequipinnatus respectively. The coefficient of determination (r² > .95) for all the species is statistically significant.     

Nested clade and phylogeographic analyses of the chub, Leuciscus cephalus (Teleostei, cyprinidae), in Greece: implications for Balkan Peninsula biogeography

Phylogenetic relationships among Greek populations of the chub, Leuciscus cephalus, were investigated using 600 bp of the cytochrome b gene. The aim of this study was to test the assumption that the main difference in ichthyological composition between both sides of the Balkan Peninsula is directly linked to differences in the dispersion mechanisms used by fish in order to extend their distribution range. Phylogenetic and nested clade analyses clearly showed that populations in Greece are significantly differentiated. Greek populations were found to descend from three lineages in three geographical provinces: Western, Central, and Eastern Greece. The chub reached Western Greece at the beginning of the Pleistocene and Eastern Greece during the mid-Pleistocene. Chub dispersion occurred mainly by river confluence due to sea level lowering and river capture in Western Greece and sea dispersal with low-salinity conditions within the Aegean Sea in Eastern Greece. However, in Central Greece, the original mtDNA lineage has presumably been lost owing to a genetic introgression following a second invasion from the Danube during the final stage of the last glaciation. This study provides new elements for a better understanding of the composition of the contemporary ichthyofauna in Greece and highlights possible evolutionary mechanisms responsible for the high endemism rate in the Western Greek biogeographic province.     

Phylogenetic relationships between tuna species of the genus Thunnus (Scombridae: Teleostei): Inconsistent implications from morphology,nuclear and mitochondrial genomes

In order to infer phylogenetic relationships between tuna species of the genus Thunnus, partial sequences of the mitochondrial cytochrome b and ATPase genes were determined in all eight species. Supplemental restriction analysis on the nuclear rRNA gene was also carried out. Pacific northern bluefin tuna (Thunnus thynnus orientalis) was found to have mtDNA distinct from that of the Atlantic subspecies (T. t. thynnus) but very similar to that from the species albacore (T. alaluga). In contrast, no differentiation in nuclear genome was observed between the Atlantic and Pacific northern bluefin tunas. The Atlantic northern bluefin and southern bluefin tunas possessed mtDNA sequences very similar to species of yellowfin tuna group and not so similar to albacore and bigeye tunas which were morphologically assigned to the bluefin tuna group. The molecular data indicate that (1) mtDNA from albacore has been incorporated into the Pacific population of northern bluefin tuna and has extensively displaced the original mtDNA, and (2) albacore is the earliest offshoot, followed by bigeye tuna in this genus, which is inconsistent with the phylogenetic relationships between these tuna species inferred from morphology. Correspondence to: S. Chow     

Species limits and phylogenetic relationships of red‐finned cryptic species of the seasonal killifish genus Hypsolebias from the Brazilian semi‐arid Caatinga (Teleostei: Cyprinodontiformes: Rivulidae)

Members of the Hypsolebias antenori species group comprise a diverse clade of morphologically similar seasonal killifishes occurring in a vast region of the semi‐arid savannah of northeastern Brazil. The present paper focuses on an assemblage of three allopatric cryptic species (H. antenori from isolated coastal river drainages, Hypsolebias igneus from the São Francisco River basin and Hypsolebias coamazonicus sp. nov. from the Parnaíba River basin) sharing almost identical colour patterns, including the presence of an orangish red anal fin in males, thus herein named as the red‐finned assemblage. A tree‐based approach using mt‐DNA (cytochrome b) supports delimitation of all three species, but indicates that the red‐finned assemblage is paraphyletic – H. igneus and H. coamazonicus are closely related to Hypsolebias nudiorbitatus, whereas H. antenori is the sister group to a clade comprising all 13 species of the H. antenori group included in the analysis. Morphological characters are useful to diagnose species, but are not informative for most clades highly supported by molecular data. H. coamazonicus is distinguished from all other congeners by the possession of a dark grey or black stripe on the dorsal fin in males. The basal position of H. antenori is related to uplift episodes involving the Araripe‐Borborema plateau during the Miocene, which isolated the coastal area inhabited by H. antenori from the remaining areas of the Caatinga. The sister group relationship between H. igneus and H. coamazonicus is attributed to a past connection between the São Francisco and Paranaíba River until the Tertiary.     

Length–weight and length–length relationships for 11 species of the genus Alburnoides Jeitteles, 1861 (Cyprinidae) from Iran

Length–weight (LWR) and length–length (LLR) relationships were estimated for 11 Alburnoides species from 15 localities throughout Iran. These represent the first reports of LWR and LLRs data for 10 species, including: Alburnoides coadi (40 specimens), A. damghani (30), A. eichwaldii (110), A. holciki (30), A. idigensis (113), A. namaki (30), A. nicolausi (30), A. parhami (30), A. qanati (30) and A. tabarestanensis (30) and first LLR data for A. samiii. Nine of these species are endemic and two are native to Iran. The length–weight parameter b for these species ranged from a minimum of 2.94 for Alburnoides nicolausi to a maximum of 3.37 for Alburnoides parhami, with regression coefficients (r²) ranging from 0.91 to 0.99. All LLRs were highly significant (r² > 0.96).     

Length–weight relationships of 26 fish species from the middle section of the Negro River (Tacuarembó‐Durazno,Uruguay)

This study provides data on the length–weight relationship (LWR) for 26 species of neotropical fishes. Specimens were collected between 2008 and 2009 from a dam‐enclosed section of the middle Negro River (Uruguay). This study represents the first reference on length–weight relationships for 17 species, and also provides new maximum sizes for eight species.     

First record of an Early Barremian caprinid rudist from Japan – implications for the palaeobiogeography of the Caprinidae (Bivalvia)

Abstract: Pachytraga Paquier, 1900, the stratigraphically oldest genus of caprinine caprinid rudist, was previously known from only two chronospecies from a single lineage, that is the Hauterivian P. tubiconcha Astre, 1961 and the early Aptian P. paradoxa (Pictet and Campiche, 1869). Here, a new species, Pachytraga? tanakahitoshii, is erected on the basis of isolated left valves recovered from the Osaka and Sanchu areas, south‐west Japan. This species has a moderate shell size (antero‐posterior commissural diameter c. 30 mm), and its left valve is characterized by at least one possibly autapomorphic character (narrow anterior myophore, inclined inwards), as well as a mosaic of primitive (single longitudinal carina developed on the anterior side) and derived (simple marginal canals in the antero‐dorsal valve margin) characters of Mediterranean and Middle East Tethyan Pachytraga. The Japanese Pachytraga? represents the first probable record of this genus outside the Mediterranean/Middle Eastern Tethyan province, and its early Barremian age partly fills the ‘gap’ in its previously known stratigraphical record, although the evolutionary relationship of the Japanese form with Mediterranean and Middle East Tethyan Pachytraga remains unsolved. However, the discovery of early Barremian Pachytraga? in Japan indicates that the evolutionary history of the genus is more complex than previously thought and should thus be discussed in a broader palaeogeographical context that must now include the Pacific.     

Remains of Hipparion (Equidae,Perissodactyla) from Puente Minero (Teruel Province,Spain) and their implications for the systematics of the Turolian Hipparionini

Abstract: Morphological and biometrical variability of the equid Hipparion from Puente Minero and other localities from the Teruel Basin, Spain (MN10–MN13), is analysed. Three species of Hipparion are recognized in Puente Minero, H. laromae, H. matthewi and Hipparion sp. cf. H. longipes, through comparison with other Spanish and Eurasian species (Samos, Greece; Höwenegg, Germany; Pavlodar, Kazakhstan, small and large forms; Akka?da?i, Turkey; and the following Spanish sites, La Roma 2, Los Aljezares, Concud, Milagros, Las Casiones and Venta de Moro). The majority of the Hipparion remains from Puente Minero and determined to be Hipparion laromae based on their size and morphology. This interpretation was confirmed by bivariate and multivariate analyses. These results suggest a Eurasian immigration of different Hipparion species into the Teruel Basin.     

Length–weight and length–length relationships for three species of Squalius (Cyprinidae; Leuciscinae) from the Caspian Sea,Namak and Tigris basins of Iran

Length‐weight and length‐length relationships were estimated for three species of the genus Squalius. These fish were sampled from the Caspian Sea as well as the Namak and Tigris basins of Iran. Sampling took place between July 2009 and August 2010 using a seine net (15 m long, 2 m width and 5 mm mesh size). The values of the b parameter in the length‐weight relationship equations were determined as 3.37 for S. turcicus, 3.25 for S. namak and 3.14 for S. berak (b > 3).     

The Parvidrilidae – a diversified groundwater family: description of six new species from southern Europe,and clues for its phylogenetic position within Clitellata (Annelida)

The Parvidrilidae Erséus, 1999 constitute the most recently described family of oligochaete microdriles. Prior to this study, Parvidrilus strayeri Erséus, 1999, and Parvidrilus spelaeus Martínez‐Ansemil, Sambugar & Giani, 2002, found in groundwaters of the USA (Alabama) and Europe (Slovenia and Italy), respectively, were the only two species in this family. In this paper, six new species – Parvidrilus camachoi , Parvidrilus gianii , Parvidrilus jugeti , Parvidrilus meyssonnieri , Parvidrilus stochi , and Parvidrilus tomasini – and Parvidrilus gineti (Juget, 1959) comb. nov. are added to the family. With all species being stygobiont, the Parvidrilidae is unique in being the only family of oligochaetes worldwide comprising taxa that are restricted to groundwater habitats. Parvidrilids are exceedingly small worms whose principal morphological characteristics are the presence of hair setae in ventral bundles, the markedly posterior position of setae within the segments, the presence of mid‐dorsal glandular pouches in mesosomial segments, the lateral development of the clitellum, the presence of a single male pore in segment XII, and the presence (or absence) of a single spermatheca. The phylogenetic relationships of the Parvidrilidae within the Clitellata were investigated using the nuclear 18S rRNA gene, and the most representative and taxonomically balanced data set of clitellate families available to date. The data were analysed by parsimony, maximum likelihood, and Bayesian inference. Irrespective of the method used, Parvidrilidae were placed far from Capilloventridae, one family once suggested to be closely related to parvidrilids. Although closer to Enchytraeidae than Phreodrilidae, two other suggested putative sister families, the exact position of Parvidrilidae within Clitellata still remained uncertain in the absence of branch support. The examination of reproductive structures, together with the similarity of other important anatomical traits of the new species herein described, reinforced the idea that phreodrilids were the best candidate to be the sister group to parvidrilids on morphological grounds. A fragment of the mitochondrial cytochrome oxidase I gene, used as a barcode, also genetically characterized a few Parvidrilus species. The observation that two species diverge from each other by high genetic distances, even though their type localities are more or less only 100 km apart, is interpreted in the context of low dispersal abilities of inhabitants of the subterranean aquatic ecosystem, and habitat heterogeneity. The Parvidrilidae appear to be a diversified, Holarctic, and probably widely distributed family in groundwater, but very often overlooked because of the small size and external similarity with the polychaete family Aeolosomatidae of its members. © 2012 The Linnean Society of London, Zoological Journal of the Linnean Society, 2012, 166 , 530–558.     

Evaluating evolutionary pressures and phylogenetic signal in earthworms: a case study – the number of typhlosole lamellae in Hormogastridae (Annelida,Oligochaeta)

Rarely have phylogenetic comparative methods been used to study the correlation between phenotypic traits and environmental variables in invertebrates. With the widespread convergence and conservativeness of the morphological characters used in earthworms, these comparative methods could be useful to improve our understanding of their evolution and systematics. One of the most prominent morphological characters in the family Hormogastridae, endemic to Mediterranean areas, is their multilamellar typhlosole, traditionally thought to be an adaptation to soils poor in nutrients. We tested the correlation of body size and soil characteristics with the number of typhlosole lamellae through a phylogenetic generalized least squares (PGLS) analysis. An ultrametric phylogenetic hypothesis was built with a 2580‐bp DNA sequence from 90 populations, used in combination with three morphological and 11 soil variables. The best‐supported model, based on the Akaike information criterion, was obtained by optimizing the parameters lambda (λ), kappa (κ), and delta (δ). The phylogenetic signal was strong for the number of typhlosole lamellae and average body weight, and was lower for soil variables. Increasing body weight appeared to be the main evolutionary pressure behind the increase in the number of typhlosole lamellae, with soil texture and soil richness having a weaker but significant effect. Information on the evolutionary rate of the number of typhlosole lamellae suggested that the early evolution of this character could have strongly shaped its variability, as is found in an adaptive radiation. This work highlights the importance of implementing the phylogenetic comparative method to test evolutionary hypotheses in invertebrate taxa.