Corallite wall and septal microstructure in scleractinian reef corals: Comparison of molecular clades within the family Faviidae

Recent molecular phylogenies conflict with traditional scleractinian classification at ranks ranging from suborder to genus, challenging morphologists to discover new characters that better agree with molecular data. Such characters are essential for including fossils in analyses and tracing evolutionary patterns through geologic time. We examine the skeletal morphology of 36 species belonging to the traditional families Faviidae, Merulinidae, Pectiniidae, and Trachyphylliidae (3 Atlantic, 14 Indo‐Pacific, 2 cosmopolitan genera) at the macromorphological, micromorphological, and microstructural levels. Molecular analyses indicate that the families are not monophyletic groups, but consist of six family‐level clades, four of which are examined [clade XV = Diploastrea heliopora; clade XVI = Montastraea cavernosa; clade XVII (“Pacific faviids”) = Pacific faviids (part) + merulinids (part) + pectiniids (part) + M. annularis complex; clade XXI (“Atlantic faviids”) = Atlantic faviids (part) + Atlantic mussids]. Comparisons among molecular clades indicate that micromorphological and microstructural characters (singly and in combination) are clade diagnostic, but with two exceptions, macromorphologic characters are not. The septal teeth of “Atlantic faviids” are paddle‐shaped (strong secondary calcification axes) or blocky, whereas the septal teeth of “Pacific faviids” are spine‐shaped or multidirectional. Corallite walls in “Atlantic faviids” are usually septothecal, with occasional trabeculothecal elements; whereas corallite walls in “Pacific faviids” are usually trabeculothecal or parathecal or they contain abortive septa. Exceptions include subclades of “Pacific faviids” consisting of a) Caulastraea and Oulophyllia (strong secondary axes) and b) Cyphastrea (septothecal walls). Diploastrea has a diagnostic synapticulothecal wall and thick triangular teeth; Montastraea cavernosa is also distinct, possessing both “Pacific faviid” (abortive septa) and “Atlantic faviid” (paddle‐shaped teeth) attributes. The development of secondary axes is similar in traditional Atlantic faviids and mussids, supporting molecular results placing them in the same clade. Subclades of “Pacific faviids” reveal differences in wall structure and the arrangement and distinctiveness of centers of rapid accretion. J. Morphol. 272:66–88, 2011. © 2010 Wiley‐Liss, Inc.     

Copepods associated with reef corals: a comparison between the Atlantic and the Pacific

Endoparasitic copepods are very numerous in Indo-West Pacific corals. In West Indian corals they were thought to be absent, but recent studies have shown that a varied endoparasitic copepod fauna exists as well. Striking is the taxonomic composition of the coral-inhabiting copepods:In the Indo-West Pacific Lichomolgidae and Xarifiidae are the dominant families, both are absent in the West Indies. On the other hand, Corallovexiidae and Asterocheridae dominate in the West Indies; the former family is absent and the latter is apparently rare and not very diversified in the Indo-West Pacific.     

Evolutionary diversification of reef corals: a comparison of the molecular and fossil records

Understanding historical patterns of diversity dynamics is of paramount importance for many evolutionary questions. The fossil record has long been the only source of information on patterns of diversification, but the molecular record, derived from time-calibrated phylogenies, is becoming an important additional resource. Both fossil and molecular approaches have shortcomings and biases. These have been well studied for fossil data but much less so for molecular data and empirical comparisons between approaches are lacking. Here, we compare the patterns of diversification derived from fossil and molecular data in scleractinian reef coral species. We also assess the robustness of molecular diversification rates to poor taxon sampling. We find that the temporal pattern of molecular diversification rates is robust to incomplete sampling when rates are calculated per interval. The major obstacle of molecular methods is that rate estimates are distorted because diversification rates can never be negative, whereas the fossil record suffers from incomplete preservation and inconsistent taxonomy. Nevertheless, the molecular pattern of diversification is comparable to the pattern we observe in the fossil record, with the timing of major diversification pulses coinciding in each dataset. For example, both agree that the end-Triassic coral extinction was a catastrophic bottleneck in scleractinian evolution.     

The distribution of scleractinian corals in the Bay of Biscay, NE Atlantic

Studies on the distribution of scleractinian corals in the Bay of Biscay were relatively numerous during the nineteenth and the first half of the twentieth century. Yet, recent reports are scattered, sometimes unpublished, and therefore knowledge about the current coral occurrence in the area is limited. This study aims at compiling the available historical and more recently collected information on the occurrence of scleractinian corals in the Bay of Biscay. Data from two recent cruises are included and compared with previous explored coral sites from as early as 1830 up to 1995. A database of 347 records including 34 described species of scleractinians highlights that the slope of the Bay of Biscay is an important habitat for scleractinians. This could be expected due to the high topographic relief providing the necessary hard substrate and accelerated bottom current flow that corals require. Further exploration of the occurrence and ecology of corals in the area is recommended to support the conservation of cold-water coral reefs along the European margin. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Allorecognition and xenorecognition in reef corals: a decade of interactions

Xenorecognition phenomena in coral reefs are expressed by a striking array of morphological and cytological responses. Corals encountering conspecifics further elicit additional repertoires of effector mechanisms, specific to allogeneic challenges. Both inducible sets of antagonistic machineries of allo- and xenoresponses are highly specific. In many cases, they are predictable, reproducible, and reveal the hallmark of coral tissue capacity to distinguish between self and non-self. This essay summarizes a decade (1992 –2002) of published results on reef coral immune features. While studies on xenorecognition uncovered the existence of established, non-transitive hierarchies and the importance of antibacterial/cytotoxic compounds secreted by corals, allorecognition assays disclosed the presence of specific and complex non-transitive hierarchies dictated by the expression of a variety of effector mechanisms (‘tailored’ against different conspecifics), the existence of gradual maturation of alloresponses (important in the formation of natural chimeras), the debatable issue of allorecognition memory, and the appearance of delayed, second sets of alloresponses. A critical evaluation of historecognition reveals that expressed responses in different coral systems are phenotypically matched with counterpart outcomes recorded in the mammalian immune systems. Histocompatibility in corals, as in vertebrates, relies on recognition elements (not yet disclosed on the molecular level) as well as on effector mechanisms.     

悬浮物对造礁石珊瑚营养方式的影响及其适应性研究进展

营养方式是造礁石珊瑚获取能量与营养物质的基础,影响其生长与分布。近年来珊瑚礁区悬浮物含量与组分结构发生显著变化,其对造礁石珊瑚营养方式的诸多影响正成为当前研究热点。研究系统综述了珊瑚礁区悬浮物变化特征、悬浮物对造礁石珊瑚营养方式的影响及其适应性研究现状。发现近年来人类活动加剧与强降雨事件频发是驱动珊瑚礁,尤其是近岸珊瑚礁区悬浮物含量递增、组分改变与变频加剧的主因;悬浮物变化对造礁石珊瑚光合自养与异养营养的影响存在显著的种间差异,这主要与悬浮物消光效应、生物可利用性及造礁石珊瑚种类密切相关。虽然少数种类造礁石珊瑚具光合可塑性或异养可塑性,能在高含量悬浮物存在的弱光环境中较好生长。然而对绝大多数造礁石珊瑚而言,其营养方式适应性较差,无法在悬浮物影响下较好地获取生命活动所需的能量与营养物质,进而难以生存。总体来说,悬浮物被认为是近年来影响造礁石珊瑚生长与分布的重要环境因子之一,而关于造礁石珊瑚营养方式对悬浮物变化的响应及其适应机制,当前研究仍较薄弱,需要进一步加强相关研究。     

Small-scale variability in the size structure of scleractinian corals around Moorea, French Polynesia: patterns across depths and locations

The size structure of coral populations is influenced by biotic and physical factors, as well as species-specific demographic rates (recruitment, colony growth, mortality). Coral reefs surrounding Moorea Island are characterized by strong environmental gradients at small spatial scales, and therefore, we expected that the size structure of coral populations would vary greatly at this scale. This study aimed at determining the degree of spatial heterogeneity in the population size structure of two coral taxa, Pocillopora meandrina and massive Porites spp., among depths (6, 12, and 18 m) and among locations (Vaipahu, Tiahura and Haapiti) representing different exposure to hydrodynamic forces. Our results clearly underlined the strong heterogeneity in the size structure of both P. meandrina and massive Porites spp., with marked variation among depths and among locations. However, the lack of any consistent and regular trends in the size structure along depths or among locations, and the lack of correlation between size structure and mean recruitment rates may suggest that other factors (e.g., stochastic life history processes, biotic interactions, and disturbances) further modify the structure of coral populations. We found that the size structure of P. meandrina was fundamentally different to that of massive Porites spp., reflecting the importance of life history characteristics in population dynamics. Handling editor: I. Nagelkerken     

Spawning of coral reef invertebrates and a second spawning season for scleractinian corals in the central Red Sea

Recent coral spawning observations in the central Red Sea show that most scleractinian species release their gametes in the spring, with a majority of species spawning in April. There is, however, a lack of reproductive data for several other coral species, as well as a general lack of data for other invertebrates. Here, we document the detailed timing of spawning for 13 scleractinian coral species, one sea anemone, and six echinoderms from an inshore reef off the coast of Thuwal, Saudi Arabia, in the spring between April and June 2014. Furthermore, inferred from the presence of mature gametes, we report the month of spawning for three additional coral species in the spring. Seven scleractinian coral species were inferred to release their gametes in a second reproductive season, in the autumn, between September and November. This is the first report of a second spawning season in the Arabian region. Biannual spawning has so far been reported on the Great Barrier Reef, in Western Australia, in Indonesia, in Malaysia, in Palau, in Thailand, in Taiwan, and in Western Samoa.     

Main lipid classes in some species of deep-sea corals in the Newfoundland and Labrador region (Northwest Atlantic Ocean)

Corals contain large quantities of lipids in their tissues; these lipids may be either structural or for storage. Little information is available about the lipid content of deep-sea corals, as well as ratios of main lipid classes. In this study, lipid percentages of 81 deep-sea specimens were measured and the presence of six major classes, including sterols (STEROLS), free fatty acids (FFA), triacylglycerols (TG), monoalkyldiacyl glycerol (MADAG), wax (WAX), and sterol esters (SE), was assessed. Deep-sea corals had fewer lipids than their shallow water counterparts. Decision-tree analysis revealed a link between coral groups and total lipid percentages, showing that species within the same group were characterized by similar lipid amounts. Depth did not seem to impact the total lipid percentages, suggesting that deep-sea corals adapt to the differential access to food by changing the proportion of lipid classes while maintaining equivalent lipid levels. In deep-sea species, similar to their shallow water counterparts, energy seems to be stored as neutral lipids (wax esters and triacylglycerols), with the notable difference that a high proportion of MADAG is present. These compounds are less rich in energy than TG. Depth trends were found for FFA, TG and SE with an increase in percentages after 800 m suggesting a potential need for storage due to decreased food availability. A subsequent decrease after 1,100 m was observed for FFA and TG but a more detailed investigation is warranted as the number of specimens acquired from these depths was less than 20. It is nonetheless a surprising result as increased storage is expected when food sources are sparse.     

Re-evaluating the health of coral reef communities: baselines and evidence for human impacts across the central Pacific

Numerous studies have documented declines in the abundance of reef-building corals over the last several decades and in some but not all cases, phase shifts to dominance by macroalgae have occurred. These assessments, however, often ignore the remainder of the benthos and thus provide limited information on the present-day structure and function of coral reef communities. Here, using an unprecedentedly large dataset collected within the last 10 years across 56 islands spanning five archipelagos in the central Pacific, we examine how benthic reef communities differ in the presence and absence of human populations. Using islands as replicates, we examine whether benthic community structure is associated with human habitation within and among archipelagos and across latitude. While there was no evidence for coral to macroalgal phase shifts across our dataset we did find that the majority of reefs on inhabited islands were dominated by fleshy non-reef-building organisms (turf algae, fleshy macroalgae and non-calcifying invertebrates). By contrast, benthic communities from uninhabited islands were more variable but in general supported more calcifiers and active reef builders (stony corals and crustose coralline algae). Our results suggest that cumulative human impacts across the central Pacific may be causing a reduction in the abundance of reef builders resulting in island scale phase shifts to dominance by fleshy organisms.     

Disaster taxa in microbially mediated metazoans: how endosymbionts and environmental catastrophes influence the adaptive capacity of reef corals

Reef corals are examples of metazoans that engage in mutualisms with a variety of microorganisms, including dinoflagellates, Bacteria, Archaea, and viruses. The high adaptive capacity of these microbial symbionts can be co‐opted by their coral hosts, and various emergent traits of these associations, such as thermotolerance, are undergoing strong selection due to climate change. This selection may spur the rise of microbial ‘disaster taxa’: opportunistic, cosmopolitan generalists that can proliferate and increase host survivorship following disturbances. Coral bleaching (a stress‐induced loss of dinoflagellates) constitutes one type of catastrophic disturbance for resident symbiont communities, and opens novel patches of host for colonization by microbial disaster taxa. Moreover, the compartmentalization of microbial symbionts within coral polyps reduces their effective population size and thus facilitates the spread of disaster taxa during times of environmental change. These phenomena suggest that, despite widespread loss of coral cover as a result of climate disturbances, the potential spread of resilient microbial disaster taxa in surviving colonies can have important implications for coral reef persistence over the coming decades.     

The systematics of Lobophora (Dictyotales,Phaeophyceae) in the western Atlantic and eastern Pacific oceans: eight new species

Lobophora is a common tropical to temperate genus of brown algae found in a plethora of habitats including shallow and deep‐water coral reefs, rocky shores, mangroves, seagrass beds, and rhodoliths beds. Recent molecular studies have revealed that Lobophora species diversity has been severely underestimated. Current estimates of the species numbers range from 100 to 140 species with a suggested center of diversity in the Central Indo‐Pacific. This study used three molecular markers (cox3, rbcL, psbA), different single‐marker species delimitation methods (GMYC, ABGD, PTP), and morphological evidence to evaluate Lobophora species diversity in the Western Atlantic and the Eastern Pacific oceans. Cox3 provided the greatest number of primary species hypotheses(PSH), followed by rbcL and then psbA. GMYC species delimitation analysis was the most conservative across all three markers, followed by PTP, and then ABGD. The most informative diagnostic morphological characters were thallus thickness and number of cell layers in both the medulla and the dorsal/ventral cortices. Following a consensus approach, 14 distinct Lobophora species were identified in the Western Atlantic and five in the Eastern Pacific. Eight new species from these two oceans were herein described: L. adpressa sp. nov., L. cocoensis sp. nov., L. colombiana sp. nov., L. crispata sp. nov., L. delicata sp. nov., L. dispersa sp. nov., L. panamensis sp. nov., and L. tortugensis sp. nov. This study showed that the best approach to confidently identify Lobophora species is to analyze DNA sequences (preferably cox3 and rbcL) followed by comparative morphological and geographical assessment.     

Community structure and diet of roving herbivorous reef fishes in the Abrolhos Archipelago, south-western Atlantic

Community structure and diet of roving herbivorous reef fishes were analysed in 13 study sites around the five islands of the Abrolhos Archipelago, north-eastern Brazil (17°58' S; 38°42' W). This area has been part of the Abrolhos Marine National Park since 1983. Abundances and diets of fishes within the families Scaridae, Acanthuridae and Kyphosidae were compared among groups of sites differing in benthic community structure and exposure regime. The abundance of roving herbivorous fishes was higher in shallower sites than in deeper sites. At all study sites, observations of total herbivorous reef fish community structure revealed that 64% of fishes were acanthurids, 33% were scarids and only 4% were kyphosids. This pattern was predominant in all study sites. The majority of fishes examined in this study had the bulk of their diet based on both algae (35–90%) and detritus (35–65%). Among groups of algae, filamentous algae were the most commonly consumed as the majority of roving herbivorous fishes in Abrolhos feed as scrapers and excavators. The exceptions were the kyphosids, which had a diet consisting primarily of macroalgae (mainly Phaeophyta), and Acanthurus coeruleus that consumed mainly turf algae and very little detritus. The data collected indicate that roving herbivorous fishes in the Abrolhos Archipelago are more abundant at calm sites where detritus and delicate algae, their major food resources, are more abundant. The results presented here, along with underwater observations, suggest that the abundance and diet of these three fish families are associated with substratum cover.     

Ground spider diversity in the Kenting uplifted coral reef forest, Taiwan: a comparison between habitats receiving various disturbances

The effects of various disturbances on diversity and community structures of ground spiders in the Kenting National Park uplifted coral reef forest were investigated using pitfall traps. In each of the following five sampling sites, ten trap stations were established and were monitored once every month for a whole year: primary forest, primary forest with tourism activities, secondary forest, grassland with tourism activities and abandoned grassland. A total of 2237 adult spiders from 20 families and 110 species were collected, among which 86 (78.2%) were new or newly recorded species to Taiwan. Dominant species can be divided into two major groups according to temporal abundance variations: abundant in the dry season and abundant in the wet season. Habitat preference of 12 dominant species was assessed by comparing their relative abundance between sampling sites. Half of the species exhibited strong habitat preference and two species could only be found in habitats receiving no tourism disturbance. The Shannon–Weaver function, Simpson index and Evenness were not significantly different among the sites, suggesting that these sites had a similar community structure characterized by few dominant species and numerous rare species. However, the species composition differed considerably among the five sites. Results of a UPGMA analysis using pairwise Euclidean distance demonstrated that specimens from 50 trap stations can be divided into four major clusters: primary forest, secondary forest, grassland I and grassland II. Also, among 110 species obtained, 61 were distributed in one sampling site only, and each site had between 11 and 16 unique species. In addition to species composition, foraging guild composition also differed significantly among sampling sites. These results suggest that the diversity of ground spiders in the KTNP uplifted coral reef forest is quite heterogeneous, and any management activity should consider the uniqueness of each habitat type.     

The occurrence of Acanthurus monroviae(Perciformes: Acanthuridae) in the south‐western Atlantic, with comments on other eastern Atlantic reef fishes occurring in Brazil

The presence of 'vagrants' of the eastern Atlantic surgeonfish Acanthurus monrovia e is confirmed for the south‐eastern coast of Brazil. Three other species, Aulostomus strigosus (Aulostomidae), Parablennius pilicornis (Blenniidae) and Epinephelus marginatus (Serranidae) have apparently also crossed the Atlantic from east to west, whereas the great majority of 'amphi‐Atlantic' species appears to have their origin in the western Atlantic.     

Growth and reproduction in Canthigaster valentini (Pisces,Tetraodontidae): a comparison of a toxic reef fish with other reef fishes

Synopsis The growth and reproduction of Cantigaster valentini were studied in two sites at Lizard Island, Australia. C. valentini was found to be a gonochore, with a sex ratio very close to 1:1; sexes could be distinguished externally. The growth (in length) of known individuals from both sites was measured at least every two months over two years. Growth rates of males and females decrease as their sizes increase. Growth rates differ between sexes and between sites: males generally grow faster than females and individuals at Mermaid Cove generally grow faster than individuals at Palfrey Island. Spawning is demersal, it occurs daily between 0800 and 1600h, and continues year-round. For females the interval between successive spawnings varies from about 4 days in the warm-water season to about 10 days in the cool-water season. From a comparison of local reproductive output and local recruitment survivorship of larvae in the plankton was estimated to be much higher than in another species (Pomacentrus wardi) for which a similar estimate was available. We suggest that some aspects of the reproductive strategy of C. valentini differ from other, non-toxic reef fishes in ways consistent with a reduced threat of predation upon adults, eggs, and larvae: courtship and spawning are unhurried and occur throughout most of the day; spawning is unrelated to lunar cycles; there is no parental care or defense of fertilized eggs; and embryos often hatch on rising tides.Centre for Environmental and Urban StudiesSenior author's present address: School of Biological Sciences F07, University of Sydney, Sydney 2006, N.S.W., Australia     

The role of the reef flat in coral reef trophodynamics: Past,present, and future

The reef flat is one of the largest and most distinctive habitats on coral reefs, yet its role in reef trophodynamics is poorly understood. Evolutionary evidence suggests that reef flat colonization by grazing fishes was a major innovation that permitted the exploitation of new space and trophic resources. However, the reef flat is hydrodynamically challenging, subject to high predation risks and covered with sediments that inhibit feeding by grazers. To explore these opposing influences, we examine the Great Barrier Reef (GBR) as a model system. We focus on grazing herbivores that directly access algal primary productivity in the epilithic algal matrix (EAM). By assessing abundance, biomass, and potential fish productivity, we explore the potential of the reef flat to support key ecosystem processes and its ability to maintain fisheries yields. On the GBR, the reef flat is, by far, the most important habitat for turf‐grazing fishes, supporting an estimated 79% of individuals and 58% of the total biomass of grazing surgeonfishes, parrotfishes, and rabbitfishes. Approximately 59% of all (reef‐wide) turf algal productivity is removed by reef flat grazers. The flat also supports approximately 75% of all grazer biomass growth. Our results highlight the evolutionary and ecological benefits of occupying shallow‐water habitats (permitting a ninefold population increase). The acquisition of key locomotor and feeding traits has enabled fishes to access the trophic benefits of the reef flat, outweighing the costs imposed by water movement, predation, and sediments. Benthic assemblages on reefs in the future may increasingly resemble those seen on reef flats today, with low coral cover, limited topographic complexity, and extensive EAM. Reef flat grazing fishes may therefore play an increasingly important role in key ecosystem processes and in sustaining future fisheries yields.