Species relative abundance and direction of introgression in oaks

Successful hybridisation and subsequent introgression lead to the transfer of genetic material across species boundaries. In this process, species relative abundance can play a significant role. If one species is less abundant than the other, its females will receive many heterospecific gametes, increasing mate-recognition errors and thus hybridisation rate. Moreover, first-generation hybrids will also more likely mate with the more abundant species, leading to asymmetric introgression. These predictions have important fundamental consequences, especially during biological invasions or when a rare species threatened by extinction is surrounded by individuals from a related species. However, experimental tests in nature of the importance of the relative abundance of each species on hybridisation dynamics remain scarce. We assess here the impact of species relative abundance on hybridisation dynamics among four species from the European white oak species complex. A total of 2107 oak trees were genotyped at 10 microsatellite markers and Bayesian clustering methods were used to identify reference trees of each species. We then used these reference trees to simulate purebred and hybrid genotypes to determine optimal threshold for genetic assignment. With this approach, we found widespread evidence of hybridisation between all studied oak species, with high occurrence of hybrids, varying from 11% to 31% according to stand and sampling strategies. This finding suggests that hybridisation is a common phenomenon that plays a significant role in evolution of this oak species complex. In addition, we demonstrate a strong impact of species abundance on both hybridisation rate and introgression directionality.     

塔里木沙漠公路防护林土壤微生物生物量与土壤环境因子的关系

为探讨极端干旱区风沙土土壤微生物与土壤环境因子的作用规律,采用相关分析法研究了塔里木沙漠公路防护林地土壤微生物生物量与理化因子和酶活性的关系.结果表明：土壤容重和粒径减小（R<-0.84）、含水量和孔隙增大（R>0.85）时,防护林地中土壤微生物数量和生物量有增大趋势,由容重与微生物量的相关性主导;土壤养分含量与土壤微生物数量和生物量呈正相关,主要由速效养分和放线菌、微生物生物量C、P的相关性所致;土壤酶活性与土壤微生物数量和生物量的相关性差异较大,R在0.51～0.91,主要取决于蔗糖酶、磷酸酶与放线菌、微生物量C的相关;土壤盐分增加不利于土壤微生物生物量的积累(R<-0.71);土壤微生物数量与生物量呈较高正相关（R>0.63）.实践中应为干旱区林地土壤微生物营造良好的土体,促进土壤物质循环.     

Sedimentation and composition of wall communities in Alaskan fjords

The effects of suspended sediments on the composition of wall communities in Alaskan fjords were investigated by quantitative assessment of underwater photo-quadrats. In fjords with actively retreating tidewater glaciers, suspended sediment levels were extremely high at the heads and were exponentially lower at the mouths. Fjords without glaciers had low suspended sediment levels throughout. The per cent cover and number of species were lowest where sedimentation was highest, at the heads of glacial fjords. Here the wall communities were dominated by a sparse cover of small serpulid worms. Richer communities comprising mostly algae, sponges, hydroids, bryozoans, tunicates and brachiopods were found in fjords without glaciers, and at the mouths of glacial fjords. There was a positive correlation between water clarity and community composition along a gradient from heads to the mouths of fjords with high suspended sediment levels. Accepted: 11 January 1999     

Observations of killer whales (Orcinus orca) in the fjords of Chilean Patagonia

Killer whales occur in Chilean waters, but their seasonality, diets, and overall distribution are poorly known. Here, we present data on group composition, site fidelity, and prey species of individual killer whales recorded in 63 sightings between 2004 and 2012 in the Chilean Patagonian fjords. Group sizes were small (mean = 5, SD = 2.5 for calf groups; mean = 3, SD = 1.5 for non-calf groups), and occurrence was significantly lower in summer months. Photographs enabled identification of 55 individuals from natural markings, and all resembled Southern Ocean type A killer whales. The species was transient in the area; the average presence was 1.7 days with 60 % of individuals seen only once. Occupancy was 3–44 days, and low levels of site fidelity were recorded (64 % of individuals were seen in only 1 year). Group composition at short time scales (3 months) remained stable, but we detected changes at longer time scales. Prey included fish, otariids, and seabirds. Twelve individual killer whales showed a broad dietary spectrum: 3 ate otariids and fish, 2 ate birds and otariids, and 7 ate otariids, birds, and possibly fish. Further research is needed to increase basic biological knowledge of these killer whales and to determine the relationship with type A killer whales from the Southern Ocean.     

Benthic resting eggs of calanoid copepods in Norwegian enclosures used in mariculture: abundance, species composition and hatching

Abundance, species composition and viability of benthic resting eggs of calanoid copepods were investigated in the sediments of seven Norwegian enclosed pond systems used in mariculture as well as in the sediments of the nearby open sea. The ponds represented different types of morphometry and zooplankton communities and were located from approximately 60 to 70 °N. Differences in environmental conditions in deep water also typical with anoxia and the presence of hydrogen sulphide at most of the localities. The lowest and highest egg densities in the enclosures were 7.5 ± 6.4 × 10⁴ and 5.5 ± 2.5 × 10⁶ m^-2, respectively, higher than in the sediments of the nearby open sea. Highest densities were found at larger or median depths. Altogether, egg densities higher than 10³ m^-2 were found of only four calanoid species; Eurytemora affinis, Acartia teclae, Acartia clausi, Temora longicornis. Hatching success was variable (0–92%), and no significant correlation to the presence of anoxia and hydrogen sulphide was found. This high hatching success was achieved with eggs exposed to hydrogen sulphide for several months. The recruitment potential to the plankton of nauplii was estimated from 4.8 to 1682 nauplii l^-1 for the different localities. The results showed that resting egg production is a common life history characteristic of some neritic calanoid species in Norwegian waters. In addition to copepod eggs, low densities (< 10³ m^-2) of eggs from rotifers and cladocerans were found in most of the localities.     

Species composition,relative abundance and habitat association of small mammals along the altitudinal gradient of Jiren Mountain,Jimma, Ethiopia

To document the species composition, relative abundance and habitat association of small mammals, wet and dry season surveys were conducted along the altitudinal gradient of Jiren Mountain, Jimma area, Ethiopia. Sherman traps were used to capture small mammals from the six habitats: wetland, mixed plantation, open shrub, eucalyptus plantation, montane grassland and coffee plantation. The 393 trap nights, from the six habitat types, yielded 106 individual small mammals of tweleve species. The trapped rodents were Lophuromys flavopunctatus, Stenocephalemys albipes, Desmomys harringtoni, Mus mahomet, Lemniscomys barbarous, L. striatus, Tachyoryctes splendens, Mastomys natalensis and the insectivores Crocidura fumosa and C. turba. Two species of rodents Hystrix cristata and Helioscuirus gambianus were observed. Lophuromys flavopunctatus and S. albipes contributed 83.8% of the total capture. L. flavopunctatus, S. albipes and D. harringtoni were distributed in all habitats and gradients. T. splendens was captured from montane habitat, while the zebra mice were associated with the lower altitude habitats. Lophuromys flavopunctatus and M. natalensis extended their range deep into the coffee plantation habitats. Uncontrolled vegetation exploitation of the mountains for timber production and fire wood collection are the major threats. Conservation of the area to reduce the anthropogenic pressure is essential.     

北部湾海域浮游介形类物种组成、丰度分布及多样性

根据1998年1月～1999年5月北部湾海域4个航次生态环境综合调查资料,对北部湾海域浮游介形类进行分析研究。结果表明,北部湾渔场浮游介形类物种组成较为简单,记录有小型海萤（Cypridina nana）、齿形海萤（Cypridina dentata）、尖尾海萤（Cypridina acuminata）、纳米海萤（Cypridina nami）、针刺真浮萤（Euconchoecia aculeata）、细长真浮萤（Euconchoecia elongata）、后圆真浮萤（Euconchoecia maimai）等18种;隶属于2亚目、2科、4亚科、12属,其中有4种周年出现,9种只在特定的单一季节出现,其余5种季节性出现;夏季和冬季出现的物种数最多,达到11种;春季次之,为9种;秋季最少,只有6种。北部湾浮游介形类可以划分为3个生态类群,即低盐暖水类群、广温广盐类群和高温高盐类群,优势种群主要是近岸低盐暖水类群的针刺真浮萤和尖尾海萤。全海域栖息密度变化范围为0．02～51．58ind．／m^3,年平均1．22ind．／m^3,春季最高,达2．73ind．／m^3,在湾西北部密集有大量的针刺真浮萤;夏季此密集区逐渐向湾中部移动,纳米海萤为其密集种,栖息密度也有所降低;秋、冬季量少,但在湾南、北部各出现一个丰度相对较高的密集区,并由南北向湾中部递减。总生物量具有明显的季节性变化,平面分布趋势与栖息密度相似。生物多样性指数低,以湾口较高、湾顶较低,呈湾口向湾内西北方向递减趋势;全海域年平均多样性阈值为0．329,四季多样性水平皆为Ⅰ级,多样性程度低;多样性程度较高的区域,多出现于受外海水影响较大、水文状况变化较为复杂的海域。对浮游介形类的物种组成、丰度分布及多样性与北部湾的水系、水团、水温及盐度等环境因子的关系进行了探讨。     

Species diversity and relative abundance of vaginal lactic acid bacteria from women in Uganda and Korea

AIMS: Lactobacilli play an important role in maintaining vaginal health of women. The aim of this study was to compare the species richness and relative abundance of Lactobacillus and other lactic acid bacteria in women of two geographically distant countries, Uganda and Korea. METHODS AND RESULTS: Vaginal samples were obtained from two women populations in Uganda and Korea. The Lactobacillus Rogosa SL agar was used for initial isolation of lactic acid bacteria. After phenotypic analyses, the 16S rRNA gene was amplified by polymerase-chain reaction and analysed by the BLAST program and phylogenetic tree construction. A total of 338 (128 Korean and 210 Ugandan) vaginal lactic acid bacterial strains were isolated, including five genera: Lactobacillus, Leuconostoc, Pediococcus, Streptococcus and Weissella. While Lactobacillus crispatus was common in both populations, Lactobacillus fermentum was common only in Korean women, and Lactobacillus gasseri, Lactobacillus reuteri and Lactobacillus vaginalis only in Ugandan women. Among other lactic acid bacteria, Weissella was more common in Ugandan, and Pediococcus in Korean women. All Weissella strains produced hydrogen peroxide, and all Pediococcus strains inhibited Candida species. CONCLUSION: Although many lactic acid bacteria colonize women, their species distributions may be different in women of geographically separated communities. SIGNIFICANCE AND IMPACT OF THE STUDY: The knowledge of species richness and relative abundance of vaginal lactic acid bacteria, including Lactobacillus, Pediococcus and Weissella, may lead to the design of better probiotic products as bacterial replacement therapy.     

Changes in the abundance and composition of cyclopoid copepods following fish manipulation in eutrophic Lake Væng, Denmark

1. The seasonal cycle of cyclopoid copepods during and following an approximately 50% reduction in planktivorous fish biomass was studied in shallow, eutrophic Lake Vaeng, Denmark, from 1986 to 1990. 2. The dominant cyclopoid copepods changed from Cyclops vicinus and Mesacyclops leuckarti during 1986–1989 to M. leuckarti and Megacyclops viridis in 1990. The abundance of cyclopoid copepods gradually increased from 1986 to 1988–89, decreased in autumn 1989 and markedly decreased in 1990. 3. The increase in the abundance of cyclopoid copepods from 1986 to 1988 is attributed mainly to the reduction in fish predation pressure, there being no concomitant increase in edible phytoplankton. The appearance of M. viridis in 1990, and the general decrease in cyclopoid copepod density in autumn 1989 and in 1990, are attributed to the appearance of submerged macrophytes. 4. Temperature, predation and availability of edible phytoplankton appear to determine whether C. vicinus or M. leuckarti dominates the cyclopoid copepod population of eutrophic Lake Væng.     

Diversity and abundance of littoral cladocerans and copepods in nine Ecuadorian highland lakes

The diversity and abundance of littoral cladocerans and copepods were studied in nine lakes at Reserva Ecológica Cayambe-Coca (Páramo de Guamaní), Ecuador. Six samples were taken in the littoral zone of each lake using a 500 microm mesh plankton conic net. One species of cladocerans (Ephemeroporus acanthoides) is reported for the first time in Ecuador. The diversity (H') and evenness (E) of the lakes were determined and correlated with PCA axes based on their environmental variables. The principal parameters that distinguished these lakes were altitude and pH, an unexpected finding considering that the altitudinal range was very small. Lake size is of secondary importance for this group of lakes. None of the environmental axes correlated with H' or E; nevertheless, a larger than expected species richness was found in a small oligotrophic lake with a high level of DO. Based on our results, we hypothesize that altitude and pH are important factors determining the zooplankton diversity (directly or indirectly) in highland lakes.     

Species composition,abundance, habitat requirements and regional distribution of terrestrial gastropods in Arctic Norway

Summary The species composition, abundance and habitat distributions of the terrestrial gastropods at lat. 70° N in Finnmark county, northern Norway were studied. Within an area with bedrocks of sandstone there were few snail species and abundance was low. Calciumrich bogs and birch woods with a luxuriant undergrowth had a richer gastropod fauna both in number of species and abundance. The snail fauna consisted of a mixture of stenoecious, calciphile species (Columella columella, Vertigo genesii, V. modesta) and very euryoecious species, e.g., Discus ruderatus, Vitrina pellucida. Cochlicopa lubrica and Nesovitrea hammonis were found only in moist, rather eutropic habitats and seemed to be more stenoecious than further south in their geographical range. There were few snails within the study area (16 species) compared with >30 species found in the coastal areas of northern Norway (Troms county) at the same latitude. This difference in the faunal composition coincides with regional divisions based on the vegetation, and may indicate a general difference in the biota of oceanic and continental areas of northern Norway. The changes in snail fauna along a coast-inland transect at about lat. 70° N are similar to those occurring along a vertical gradient in the inner fjord districts of Western Norway. It is suggested that low temperatures during the coldest part of the year are responsible for this common change in the species composition.     

Species composition, abundance distribution and diversity of planktonic Ostracoda in the Beibu Gulf, China

Four cruises of survey were carried out in the Beibu Gulf between Feb 1998 and May 1999. A total of 18 species of planktonic Ostracoda were identified, including Cypridina nana, Cypridina dentata, Cypridina acuminata, Cypridina nami, Euconchoecia aculeata, Euconchoecia elongata, Euconchoecia maima, and other taxa. Planktonic Ostracoda in the gulf were divided into three ecological types: (1) a hyposaline and warm-water group, (2) a eurythermal and eurysaline group, and (3) a hyperthermal and hysaline group. The warm water species such as Euconchoecia aculeate and Cypridina acuminate were the dominant Ostracoda species in the gulf, where the overall Ostracoda density ranged from 0.02 ind./m³ to 51.58 ind./m³ and averaged 1.22 ind./m³. The highest average value (2.73 ind./m³) was found in spring. Fuzzy evaluation measures indicated that the diversity in the gulf remained low (level of class I) during all seasons. Diversity appeared to be relatively higher in some regions in which the water mass was strongly influenced by the open sea and had complex structures. This article also discusses how the species composition, abundance and diversity of planktonic Ostracoda are influenced by environmental factors (e.g., aquatic system, water mass, water temperature and salinity) in the Beibu Gulf.     

Species composition,distribution, and abundance of oligochaetes in the Kanawha River,West Virginia

Species composition, distribution, and abundance of oligochaetes in the Kanawha River, West Virginia, were investigated. Eighteen taxa of oligochaetes including 7 tubificids, 8 naidids, and representatives of the families Enchytraeidae, Lumbriculidae, and Aelosomatidae were collected. While most of the species collected are cosmopolitan, Pristina synclites and Stephensoniana sp. previously reported only from Asia and Africa were collected in the Kanawha. Other peculiarities of the Kanawha oligochaete fauna included the common occurrence of specimens of Limnodrilus cervix and Limnodrilus hoffmeisteri with atypical penis sheaths. The dominant and most widely distributed of the Kanawha River oligochaetes were immature tubificids lacking capilliform chaetae, Branchiura sowerbyi, Dero cf. obtusa, Limnodrilus hoffmeisteri, and Aulodrilus pigueti.Oligochaete densities ranged from 401–2403 individuals/m² in areas presumed to be nonpolluted, to 1–671 individual/m² at sites with suspected toxicity. The highest density of oligochaetes (2835 individuals/m²) occurred at a site of organic enrichment.     

Species composition, abundance distribution and diversity of planktonic Ostracoda in the Beibu Gulf, China

Four cruises of survey were carried out in the Beibu Gulf between Feb 1998 and May 1999. A total of 18 species of planktonic Ostracoda were identified, including Cypridina nana, Cypridina dentata, Cypridina acuminata, Cypridina nami, Euconchoecia aculeata, Euconchoecia elongata, Euconchoecia maima, and other taxa. Planktonic Ostracoda in the gulf were divided into three ecological types: (1) a hyposaline and warm-water group, (2) a eurythermal and eurysaline group, and (3) a hyperthermal and hysaline group. The warm water species such as Euconchoecia aculeate and Cypridina acuminate were the dominant Ostracoda species in the gulf, where the overall Ostracoda density ranged from 0.02 ind./m³ to 51.58 ind./m³ and averaged 1.22 ind./m³. The highest average value (2.73 ind./m³) was found in spring. Fuzzy evaluation measures indicated that the diversity in the gulf remained low (level of class I) during all seasons. Diversity appeared to be relatively higher in some regions in which the water mass was strongly influenced by the open sea and had complex structures. This article also discusses how the species composition, abundance and diversity of planktonic Ostracoda are influenced by environmental factors (e.g., aquatic system, water mass, water temperature and salinity) in the Beibu Gulf.     

Larvae of uncommon caridean decapods in the German Bight: Species composition,distribution and abundance

Typically, the most abundant group of shrimp larvae in the German Bight is formed by representatives of the family Crangonidae. Larvae of the remaining species have been largely ignored, and only scarce information concerning their ecology is available. Thus, the purpose of the present study was to determine the species composition, distribution and abundance of noncrangonid shrimp larvae in the German Bight in July 1990, after the mildest winter of the century. The material is based upon plankton samples collected at 77 stations, covering the entire German Bight. Eight species were identified, as well as larvae of Palaemonidae andProcessa-juveniles.Processa nouveli holthuisi (53.0%) andP. modica (31.3%) were predominant in the collection. The distribution of the two species was clearly separated: the main concentration ofP. nouveli holthuisi (peak concentration of 1.94 larvae per m³) was confined to the northwest corner of the German Bight, while a majority ofP. modica larvae (peak concentration of 0.54 larvae per m³) occurred at the southwesterly stations. The spatial distribution ofCaridion steveni andEualus occultus around Helgoland indicates the presence of an adult population at the only rocky island in the study area. Other taxa, such as larvae of Palaemonidae and juvenilePandalina brevirostris were collected exclusively in estuarine habitats. Based upon both the results of the present study and comparable data, we conclude that developmental stages of ten non-crangonid species, as well as representatives of Palaemonidae, can be expected to occur in the plankton of the German Bight. The extremely mild temperatures of the preceding winter may have been, in part, responsible for the relatively high densities of some taxa encountered during our plankton survey. We assume that warm winter temperatures favour the immigration, reproduction and survival of cold-sensitive species.     

The distribution and abundance of benthic cyclopoid copepods in Esthwaite Water,Cumbria

The spatial and temporal distribution of the benthic cyclopoid copepods, Acanthocyclops viridis, Acanthocyclops bicuspidatus, Eucyclops agilis, Paracyclops fimbriatus and Macrocyclops albidus in a small eutrophic lake Esthwaite Water, Cumbria was investigated in 1982 and 1983. The behavioural and physiological mechanisms by which these organisms cope with the conditions of hypoxia and anoxia prevalent during seasonal stratification of the lake waters was considered. During stratification all of these species, with the exception of resting stage A. bicuspidatus, disappeared from the profundal zone and were limited to the shallower margins of the lake. None of these copepod species entered the plankton and established planktonic populations, none appeared capable of sustained anaerobic respiration, although all can withstand some degree of hypoxia, and only A. bicuspidatus appeared capable of entering resting stages. The data suggest that in eutrophic lakes species normally found in the profundus deal with anoxia by lateral migration to shallow waters where oxygen is available.     

Species composition,abundance and diversity of Ichthyofauna of Ikere-Gorge,Oyo State,Nigeria

Anthropogenic activities in inland water can cause species loss and displacement. Therefore, there is a need to regularly examine species composition, abundance and diversity of freshwater ecosystem as a means to monitor its health. Ichthyofauna of Ikere-gorge, Iseyin, Oyo State was studied for a period of 24 month, from January 2017 to December 2018. Ikere-gorge was divided into four strata, each comprises three fishing villages. One village in each stratum was randomly selected as sampling site. The catches were sorted into taxonomic groups (species and families) using standard fish identification keys. Forty-one fish species from 13 families were identified in which species richness varied among the sampling villages. Asamu had 34, Agatu had 30, Spillway had 39 and Irawote had 29 species. The freshwater fish species of Nigeria is the richest in West Africa and more than 15% of these fish species are found in Ikere-gorge. Mormyridae family was the most represented with 10 species. Cichlidae was the most abundant by catch and by weight. Sarotherodon galilaeus has the highest abundance by catch and by weight. Gnathonemus brucii was identified as a vulnerable species. The result obtained from this study show that conservation program should be urgently put in place to prevent some fish from extinction. There should be introduction of closed season to allow for proper recruitment of fish population. Likewise, minimum mesh size should be set to allow juvenile and immature fish to escape and allow them to spawn at least once before being vulnerable to gear. There should regulation to set maximum number of fishermen to be allowed to fish at a particular day, this is to reduce fishing pressure.     

Species diversity and relative abundance of lactic acid bacteria in the milk of rhesus monkeys (Macaca mulatta)

Background Mother’s milk is a source of bacteria that influences the development of the infant commensal gut microbiota. To date, the species diversity and relative abundance of lactic acid bacteria in the milk of non‐human primates have not been described. Methods Milk samples were aseptically obtained from 54 female rhesus monkeys (Macaca mulatta) at peak lactation. Following GM17 and MRS agar plating, single bacterial colonies were isolated based on difference in morphotypes, then grouped based on whole‐cell protein profiles on SDS–PAGE. Bacterial DNA was isolated and the sequence the 16S rRNA gene was analyzed. Results A total of 106 strains of 19 distinct bacterial species, belonging to five genera, Bacillus, Enterococcus, Lactobacillus, Pediococcus, and Streptococcus, were identified. Conclusions Maternal gut and oral commensal bacteria may be translocated to the mammary gland during lactation and present in milk. This pathway can be an important source of commensal bacteria to the infant gut and oral cavity.     

Population structure, life histories and abundance of copepods in Tjeukemeer, the Netherlands

SUMMARY. The copepod zooplankton of Tjeukemeer was sampled at weekly intervals for 3 years (1969–1971), and ten species were recorded. Five species contributed more than 99% of all individuals collected. Acanthocyclops robustus is the most abundant species (66%), followed by Mesocyclops leuckarti (13%), Cyclops vicinus (11%), Eurytemora affinis (9%) and Diacyclops bicuspidatus (1%).
The ecology of the A. robustus population in Tjeukemeer differs from other A. robustus populations in that it dominates the open water zone. This is an additional argument for a taxonomic revision of the A. vernalis-robustus complex.
Seasonal periodicity in abundance of each species was very similar in 3 successive years.
All cyclopoid species went into diapause, A. robustus and M. leuckarti during winter, D. bicuspidatus and C. v. vicinus during summer. Most species diapause in a particular copepodite stage.
The seasonal variation in the population structure, the fecundity and the sex ratio are described. Both population structure and sex ratio were influenced by diapause and size-dependent mortality. The fecundity was more influenced by the water temperature and the age structure of the female population than by food situation or size of the females.