The roles of elevation and salinity as primary controls on living foraminiferal distributions: Cowpen Marsh, Tees Estuary, UK

Benthic foraminiferal assemblages in subrecent deposits are commonly used to reconstruct past sea level. Interpretations are generally made by comparison with either modern dead or total (live plus dead) assemblages. In both cases there will have been post-mortem changes that have differentially affected preservation. It is therefore important to establish the primary ecological controls by analysis of the living assemblages. We have determined the spatial and temporal variability of intertidal benthic foraminifera in the surface (0–1 cm) sediments from a time series survey of 31 sampling stations at Cowpen Marsh, for a period of 12 months. We counted 112,067 live foraminifera assigned to 28 species. The fauna was dominated by two agglutinated species (Jadammina macrescens and Trochammina inflata) on the high and middle marshes, and three calcareous species (Elphidium williamsoni, Haynesina germanica and Quinqueloculina spp.) on the low marsh and tidal flat.The standing crop of the whole intertidal zone, including the high, middle, low marsh and tidal flat habitats, and the individual species varied both temporally and spatially. The standing crop of the intertidal zone as a whole was greatest in the summer months and showed a positive correlation with elevation. The standing crops of the high and middle marshes showed similar temporal variation with peaks in summer and autumn and a trough in winter. The low marsh showed numerous peaks and troughs of standing crop during the year, whereas the tidal flat showed a single peak in summer. The standing crops of Jadammina macrescens and Trochammina inflata on the high and middle marshes peaked from April to May and August to October with troughs in winter. These agglutinated species showed a strong correlation with elevation. Haynesina germanica peaked in May to August and November to January on the low marsh, whereas on the tidal flat there was a single peak in July. The standing crops of E. williamsoni on the low marsh and tidal flat were relatively high in June and May, and July, respectively. Quinqueloculina spp. peaked in May to July on the low marsh and July on the tidal flat. The species was also found in the middle marsh from July to May and high marsh from September to November. Haynesina germanica showed a strong negative correlation with elevation, whereas the other two dominant calcareous species demonstrated weak negative correlations with both elevation and salinity.Reconstructing former sea level depends primarily on the recognition of high and middle marsh assemblages and in this study these are shown to be strongly controlled by elevation rather than salinity. Caution may be needed in interpreting low marsh and tidal flat data as salinity plays a more important role here.     

UK intertidal foraminiferal distributions: implications for sea-level studies

Foraminiferal assemblages have been collected from ten intertidal study areas situated on the east, south and west coasts of the UK. The assemblages display a vertical zonation which indicates that the distribution of foraminifera in these intertidal environments is usually the direct function of altitude with the duration and frequency of intertidal exposure the most important factors. Multivariate analyses separate foraminiferal assemblages into two faunal zones: a high- and middle marsh zone consisting of differing abundances of Jadammina macrescens, Trochammina inflata and Miliammina fusca; and a low-marsh and tidal flat zone dominated by calcareous foraminiferal species, notably Elphidium williamsoni, Haynesina germanica and Quinqueloculina spp. These faunal zones are similar to those in other mid-latitude, cool temperate intertidal environments although there are spatial and temporal variations between areas. The altitudinal ranges of the faunal zones are employed to identify the vertical relationship of the local environment in which the assemblage accumulated to a reference tide level.     

The input of foraminiferal infaunal populations to sub-fossil assemblages along an elevational gradient in a salt marsh: application to sea-level studies in the mid-Atlantic coast of North America

The suitability of marsh sites for sea-level studies was examined based on a field study along a transect from high to low marsh. Living foraminifera at Bombay Hook (Delaware, USA) are considered to be shallow infaunal (i.e., uppermost 10 cm). Peak concentrations were found at 1–10 cm in the high marsh, 1–5 cm in the intermediate marsh, and 3–5 cm in the low marsh. However, sporadic deep infaunal inputs in the low marsh could significantly contribute to the sub-fossil assemblage. In the upper 10 cm buried (death + sub-fossil) and living assemblages showed a strong correlation, and the seasonal pattern of the buried assemblage paralleled the living one, suggesting that the buried assemblage reflected the most recent reproductive inputs. The cumulative standing crop of each dominant species was used to estimate their contribution to the buried assemblage in order to assess if the community is vertically homogeneous and, therefore, if the infaunal production causes differential sub-surface enrichment. The results showed that a “shallow” (0–5 cm) infaunal contribution is able to explain much of the sub-fossil assemblage beneath the surface in the high and intermediate marsh plots. However, in the low marsh plot, the deep infaunal contribution was greatest and significantly affected the sub-fossil assemblage. Therefore, modern analogues for sea-level studies in mid-Atlantic North American marshes should include the uppermost 5 cm. The interval proposed for the high and intermediate marsh is thin enough that epifaunal species are not underrepresented and encompasses only ~8 years (based on burial rates) providing a high temporal resolution. Handling editor: J. Saros     

Distribution of modern salt-marsh foraminifera in the Albemarle–Pamlico estuarine system of North Carolina, USA: Implications for sea-level research

We described the distributions of foraminifera from ten physiographically distinct salt marshes in the Albemarle–Pamlico estuarine system, North Carolina using 193 surface samples. We defined elevation-dependent ecological zones at individual sites using cluster analysis and detrended correspondence analysis. Additionally, seven principal biozones of salt-marsh foraminifera were identified that have distinctive spatial distributions reflecting a pattern of salinity regimes caused by the current configuration of barrier-island inlets. High salinity sites along the southern Outer Banks are associated with sub-tidal calcareous assemblages, low marshes dominated by Miliammina fusca and high marsh environments defined by Haplophragmoides wilberti, Trochammina inflata and Arenoparrella mexicana. In contrast, lower salinity marshes have Ammobaculites spp. in sub-tidal settings, Miliammina fusca-dominated low marshes and high marsh settings characterized by Jadammina macrescens. Spatial variation of foraminiferal populations and the potential for biozones to migrate in response to changing inlet configuration and salinity, suggests that datasets of modern salt-marsh foraminifera from multiple environments would be appropriate for reconstructing Holocene relative sea level in North Carolina.     

Patterns of Distribution and Environmental Correlates of Macroalgal Assemblages and Sediment Chlorophyll A in Oregon Tidal Wetlands

Algae have important functional roles in estuarine wetlands. We quantified differences in macroalgal abundance, composition and diversity, and sediment chl a and pheophytin a (pheo a) among three National Wetlands Inventory (NWI) emergent marsh classes in four Oregon estuaries spanning a range of riverine to marine dominance. We also assessed the strength of macroalgal‐vascular plant associations and the degree to which environmental variables correlated with algal community metrics in marsh and woody wetlands. The frequency of occurrence of most macroalgal genera, total benthic macroalgal cover, macroalgal diversity, and sediment chl a content were several times higher in low emergent marsh than in high marsh or palustrine tidal marsh. Conversely, pheo a: chl a ratios were highest in high and palustrine marsh. Attached macroalgae (Fucus and Vaucheria) were strongly associated with plants common at lower tidal elevations such as Sarcocornia perennis and Jaumea carnosa; Ulva (an unattached alga) was not strongly associated with any common low marsh plants. In structural equation models, intertidal elevation was the most influential predictor of macroalgal cover and richness and chl a; light availability and soil salinity played secondary roles. Although common taxa such as Ulva spp. occurred across a broad range of salinities, wetlands with oligohaline soils (salinity < 5) had the lowest macroalgal diversity and lower sediment chl a. These types of baseline data on algal distributions are critical for evaluating the structural and functional impacts of future changes to coastal estuaries including sea‐level rise (SLR), altered salinity dynamics, and habitat modification.     

Sea‐level rise,habitat loss,and potential extirpation of a salt marsh specialist bird in urbanized landscapes

Sea‐level rise (SLR) impacts on intertidal habitat depend on coastal topology, accretion, and constraints from surrounding development. Such habitat changes might affect species like Belding's savannah sparrows (Passerculus sandwichensis beldingi; BSSP), which live in high‐elevation salt marsh in the Southern California Bight. To predict how BSSP habitat might change under various SLR scenarios, we first constructed a suitability model by matching bird observations with elevation. We then mapped current BSSP breeding and foraging habitat at six estuarine sites by applying the elevation‐suitability model to digital elevation models. To estimate changes in digital elevation models under different SLR scenarios, we used a site‐specific, one‐dimensional elevation model (wetland accretion rate model of ecosystem resilience). We then applied our elevation‐suitability model to the projected digital elevation models. The resulting maps suggest that suitable breeding and foraging habitat could decline as increased inundation converts middle‐ and high‐elevation suitable habitat to mudflat and subtidal zones. As a result, the highest SLR scenario predicted that no suitable breeding or foraging habitat would remain at any site by 2100 and 2110. Removing development constraints to facilitate landward migration of high salt marsh, or redistributing dredge spoils to replace submerged habitat, might create future high salt marsh habitat, thereby reducing extirpation risk for BSSP in southern California.     

Fluxes and isotopic composition of planktonic foraminifera off Hainan Island,northern South China Sea: Implications for paleoceanographic studies

Planktonic foraminifera collected from a sediment trap deployed off Hainan in the northwestern South China Sea (SCS-NW) between July 2012 and April 2013 were studied to evaluate their seasonal variability and ecology as well as to infer the factors controlling their shell fluxes. The total planktonic foraminifera flux, as well as the fluxes of the dominant species (Globigerinoides ruber, Globigerinoides sacculifer and Neogloboquadrina dutertrei), showed three distinct maxima during SW-monsoon in August 2012, the SW-NE intermonsoon in October 2012 and the NE-monsoon in December 2012–February 2013. These periods were characterized by upwelling, aerosol fallout, and intense wind mixing, respectively, from which the foraminiferal assemblages benefitted, as indicated by the close correlation between wind speed, sea surface temperature (SST), chlorophyll a concentration (Chl-a), δ¹⁸O of G. ruber and the shell fluxes. The correlation also suggests that temperature and food availability might have been the primary drivers of the observed changes in foraminiferal abundance. The offset between the SST deduced from flux-weighted of G. ruber δ¹⁸O and annual mean SST is only ∼0.3 °C, much lower than ∼5.2 °C between the summer and winter temperature, indicating a balanced seasonality bias in the shell flux. The linear regression between the satellite-derived sea surface temperature and G. ruber δ¹⁸O reveals the strong potential of this species, at least in the studied region, as an ecological indicator for past oceanic environments.     

Unrecognized controls on microbial functioning in Blue Carbon ecosystems: The role of mineral enzyme stabilization and allochthonous substrate supply

Tidal wetlands are effective carbon sinks, mitigating climate change through the long‐term removal of atmospheric CO₂. Studies along surface‐elevation and thus flooding‐frequency gradients in tidal wetlands are often used to understand the effects of accelerated sea‐level rise on carbon sequestration, a process that is primarily determined by the balance of primary production and microbial decomposition. It has often been hypothesized that rates of microbial decomposition would increase with elevation and associated increases in soil oxygen availability; however, previous studies yield a wide range of outcomes and equivocal results. Our mechanistic understanding of the elevation–decomposition relationship is limited because most effort has been devoted to understanding the terminal steps of the decomposition process. A few studies assessed microbial exo‐enzyme activities (EEAs) as initial and rate‐limiting steps that often reveal important insight into microbial energy and nutrient constraints. The present study assessed EEAs and microbial abundance along a coastal ecotone stretching a flooding gradient from tidal flat to high marsh in the European Wadden Sea. We found that stabilization of exo‐enzymes to mineral sediments leads to high specific EEAs at low substrate concentrations in frequently flooded, sediment‐rich zones of the studied ecotone. We argue that the high background activity of a mineral‐associated enzyme pool provides a stable decomposition matrix in highly dynamic, frequently flooded zones. Furthermore, we demonstrate that microbial communities are less nutrient limited in frequently flooded zones, where inputs of nutrient‐rich marine organic matter are higher. This was reflected in both increasing exo‐enzymatic carbon versus nutrient acquisition and decreasing fungal versus bacterial abundance with increasing flooding frequency. Our findings thereby suggest two previously unrecognized mechanisms that may contribute to stimulated microbial activity despite decreasing oxygen availability in response to accelerated sea‐level rise.     

干旱叠加海平面上升、氮负荷增加对河口潮汐沼泽生态系统净CO2交换的影响

河口潮汐沼泽湿地是全球重要的蓝碳生态系统之一。海平面上升和氮负荷增加是入海河流河口湿地面临的两个主要环境问题。近年来,干旱事件频发,干旱及其与海平面上升、氮负荷增加的叠加将如何影响河口潮汐沼泽湿地生态系统净CO₂交换,目前还未见报道。2020年夏秋,福建沿海经历了数月严重的气象干旱,这为揭示干旱对河口潮汐沼泽湿地生态系统净CO₂交换量(NEE)和生态系统呼吸(ER)的影响提供了一个契机。分别于2019年8—10月(正常天气)和2020年8—10月(干旱天气),在闽江河口微咸水短叶茳芏沼泽湿地运用光合作用测定仪+箱法测定不同处理(对照、模拟海平面上升、模拟氮负荷增加、模拟海平面上升+模拟氮负荷增加)短叶茳芏湿地生态系统NEE和ER,以期揭示气象干旱与海平面上升、氮负荷增加的叠加对河口沼泽湿地生态系统净CO₂交换的影响。与正常天气相比,干旱天气下各处理(包含对照)的NEE均显著降低(P<0.05);对照、海平面上升以及氮负荷增加处理样地的ER显著减少(P<0.05),海平面上升+氮负荷增加处理ER显著增加(P&l...     

Contemporary distributions of saltmarsh diatoms in the Seymour–Belize Inlet Complex, British Columbia, Canada: Implications for studies of sea-level change

Surface diatom samples were collected from two saltmarshes in the Seymour–Belize Inlet Complex on the mainland coast of British Columbia to examine the controls on diatom distribution and provide training sets for regional studies of sea-level change. Cluster analysis and detrended correspondence analysis (DCA) were used to examine diatom distributions within and between the two marshes whilst canonical correspondence analysis (CCA) and partial canonical correspondence analysis (pCCA) were used to analyse species–environment relationships. The diatom assemblages were shown to be quite different between the two marshes, Waump and Wawwat'l. Q-mode cluster analysis separated the diatom assemblages from Waump into three zones corresponding to recognized vegetation zones; diatom zone C corresponds to the high marsh and is dominated by Pinnularia obscura, Caloneis bacillum and Diploneis ovalis, zone B spans the high- and mid marsh and is characterised by Fragilaria exigua, Nitzchia palea and D. ovalis, whilst zone A from the low marsh/tidal flat includes high frequencies of Diploneis smithii, Ctenophora pulchella and F. exigua. Three different diatom zones were recognised at Wawwat'l; two upper zones, E and F, corresponding to the mid-marsh which are dominated by mixed abundances of N. palea and Fragilaria construens var. venter, Navicula peregrina and Navicula clementis and zone D from the low marsh/tidal flat with increased frequencies of F. exigua and Achnanthes delicatula. At Waump, the major controls on diatom distribution were found to be elevation and to a lesser extent pH, whilst at Wawwat'l, the primary controls were grain size/organic content, conductivity and elevation. The results confirm that saltmarsh diatoms may have potential for future sea-level studies in this region. However, caution must be exercised as the significant difference in the diatom assemblages between the two marshes suggests that the diatoms are responding to a number of environmental variables on a local scale. Some of this variation may reflect highly seasonal changes in sedimentation and salinity resulting from the proximity of the marshes to adjacent streams which are subject to spring freshet. Local differences in elevation between the collected samples may also account for some of the assemblage variability. The results emphasize the great diversity and high sensitivity of intertidal diatom species to environmental controls.     

Managing Salt Marshes for Mosquito Control: Impacts of Runnelling, Open Marsh Water Management and Grid-ditching in Sub-tropical Australia

Three salt marsh sites in south-east Queensland, Australia, have been modified for mosquito control. The problem species is Ochlerotatus vigilax, a vector of Ross River virus that is an epidemic polyarthritic disease. All sites have similar vegetation and tidal influences. Each site has a different form of modification to manage the mosquitoes: runnelling, Open Marsh Water Management (OMWM) and grid-ditching. Results are compared of a treatment and control experimental design, similar for each site, but analysed separately for each site, and over the same 3-year time period. Environmental variables monitored included: for the water table, the depth, salinity and pH; for the substrate, its moisture, salinity and pH; for the vegetation, the size and density of the dominant grass (Sporobolus virginicus) and the number of mangrove (Avicennia marina) pneumatophores. Crab activity was indicated by crab hole numbers. ANOVA analyses, comparing treatment and control at each site, indicated that runnelling had the least significant impact on the environmental variables, whereas most impacts were at the grid-ditched site. Of the 10 variables included here, 5 were affected by runnelling, 7 by OMWM and 9 by grid-ditching. Statistically significant results are summarised, compared to the relevant controls, as follows: Water table: the level was significantly higher near ditches in the grid-ditched site; pH was higher at the treatment in the OMWM site but was lower in the grid-ditched site; salinity was significantly lower in the runnelled and in part of the grid-ditched marsh. Substrate: the moisture was higher at both the OMWM and grid-ditched sites; pH was higher in the OMWM treatment but lower in the grid-ditched marsh; salinity was significantly lower at the runnelled and grid-ditched sites, but was higher near the ditch at the OMWM site. Vegetation and crabs: The grass Sporobolus virginicus was less dense in the treatments in both the OMWM and grid-ditched sites, but was taller in the runnelled site and in part of the grid-ditched site. There were fewer mangrove pneumatophores in the runnelled area, but more in the OMWM one. There was more crab activity in both the runnelled and OMWM sites. It was concluded that runnelling has least impact and that grid-ditching has the most, but that none of these appears to have destroyed the marsh environment.     

沿海地区应对气候变化和人口快速增长的韧性土地利用规划——以美国佛罗里达州马坦萨斯河流域为例

气候变化引起的海平面上升以及人口快速增长引起的土地利用变化为新时期全球沿海低洼地区的土地利用规划带来了新的挑战。有别于传统的土地利用规划理念与方法,引入韧性城市的概念,以美国佛罗里达州马坦萨斯河入海口地区应对气候变化和人口快速增长的韧性土地利用规划为例,通过构建基于地理信息系统的综合模型,整合海平面上升影响模型、物种栖息地模型和土地利用预测模型来预测适应海平面上升的土地利用规划方案。研究的结果可为中国沿海地区特别是三角洲地区应对气候变化提供借鉴。     

Microbial crusts of the late jurassic: Composition,palaeoecological significance and importance in reef construction

Summary Upper Jurassic reefs contain variable amounts of calcareous microbial crusts. In examples from Portugal, Spain and southern Germany they occur within coral biostromes and bioherms, mixed coral-siliceous sponge reefs, siliceous sponge meadows and mudmounds, and build up thrombolities with or without additional reef metazoans. The crusts are of paramount importance for the establishment and development of positive buildups. Commonly, reef growth starts with crusts which develop from a narrow base and rapidly expand laterally by rising above the sea floor. Reef associations with little or no microbial crust normally did not develop distinct relief. The basic microbial crust type is characterised by a dense to peloidal, mostly clotted, hence thrombolitic fabric which developed due to calcification triggered by microbes. Morphological evidence for this organic nature are positive relief, bridge-structures, and the shape and arrangement of peloids. The basic thrombolitic crust type is a eurytopic feature, equally occurring in settings of different bathymetry, waterenergy, salinity and oxygen/nutrient concentrations. However, the crusts also comprise additional micro-encrusters of variable abundance and diversity. The concurrent occurrence of these encrusters and diversity trends allows discrimination between crusts of different environments, particularly of different water depths. Microbial crusts from non-reefal marine oncoids show both similarities and differences with reefal crusts. For some of the mostly enigmatic micro-encrusters new clues to their nature could be detected. For instance, bubble-like structures, formerly interpreted as sporangia inLithocodium could be identified as the foraminiferBullopora aff.laevis, possibly living as a parasite or symbiont in theLithocodium algal tissue.Lithocodium andBacinella are regarded as different organisms.‘Tubiphytes’ morronensis clearly represents a symbiotic intergrowth between a nubeculinellid foraminifer and a microbe of unknown nature. The main prerequisite for the occurrence of microbial crusts is a cessation of background sedimentation which commonly can be tied to rises in sea level. This results in the development of crust-rich reefs. Fluctuations in oxygen and nutrient levels are indicated by dysaerobic bivalves and richness in authigenic glauconite, and led to the microbes outcompeting reefal metazoans, and to the development of thrombolites. Such thrombolites occur at very different depths which is interpreted to be related to a rise of dysaerobic waters due to climatic buffering and lowering of oceanic circulation during sea level rises. Microbial crusts in modern reefs are largely restricted to shaded, cryptic settings which contrasts with the wide distribution of crusts in Upper Jurassic reefs. Microbial crusts were increasingly replaced by coralline red algae since the Late Mesozoic, but despite their restricted modern habitat seem to still play an important, commonly overlooked role in the stabilisation of reef framework.     

Ecological studies on the community of drifting seaweeds in the south-eastern coastal waters of Izu Peninsula, central Japan. I: Seasonal changes of plants in species composition, appearance, number of species and size

Seasonal patterns of drifting seaweeds in the southeastern coastal waters of Izu Peninsula of central Japan were examined by sampling 966 patches from spring to autumn 1991–1993. In total, 57 plant species appeared, including 10 epiphytic algal species. Monthly totals of the number of species, excluding epiphytic aigae, were highest in May (33) and August (27), though 19–21 species of sargassaceous algae were found from May to August, The number of species, excluding epiphytic algae, in one patch of drifting seaweeds was 1 to 11 (x?= 2.93 ± 2.06) with high richness in May a result of almost entirely sargassaceous species. The wet weight of each patch and maximum stipe length of plants varied from 5 to 6970 g and from 20 to 840 cm (x?= 536.1 ± 782,3 g and 110.6 ± 76.8 cm), respectively, with highs in April and May. Out of 18 species common to all years, 10 species dominated the top or second rank in monthly pooled frequency of appearance. Seasonal changes of these 10 major species were examined, Sargassum horneri (Turner) C. Agardh and Hizikia fusiformis (Harvey) Okamura were abundant in April, but were replaced partly by Sargassum muticum (Yendo) Fensholt in May and largely by Sargassum yamamotoi Yoshida in June. In July, Sargassum nipponicum Yendo and Sargassum piluliferum (Turner) C. Agardh dominated. Subsequently, the major species shifted to Sargassum ringgoldianum Harvey and S. yamamotoi in August, Sargassum micracanthum (Kützing) Endlicher, Sargassum macrocarpum C. Agardh and Zostera marina Linnaeus in September, and S. ringgoldianum and S. micracanthum in October. However, the occurrence of S. yamamotoi, S. nipponicum and S. piluliferum in June or July were particularly heterogeneous compared with other areas of Japan. Dendrogram analysis was done based on frequency of appearance. Pooled monthly samples were divided into three groups characterized from the dominant species, degree of domination, weight, length and number of species of drifting seaweeds as well as the degree of diversity or evenness in appearance. This characterization indicated that the diversity and abundance of drifting seaweeds were higher from April to June than in later months.     

Temporal development of salt marsh value for nekton and epifauna: utilization of dredged material marshes in Galveston Bay,Texas, USA

Densities of nekton and other fauna were measured inthree created salt marshes to examine habitatdevelopment rate. All three marshes were located onPelican Spit in Galveston Bay, Texas, USA and werecreated on dredged material from the Gulf IntracoastalWaterway. The youngest marsh was planted on 1-mcenters in July of 1992. At the time sampling wasinitiated in fall 1992, the marshes were 9, 5, andless than 1 year in age; sampling continued in thefall and spring through spring 1994. Animaldensities were measured within the vegetation at twoelevations using an enclosure sampler. In the fall of1992, 4 months following the planting of the 92Marsh,densities of most marsh organisms were lower in thismarsh compared with the older two marshes. Significantly lower densities were observed fordominant crustaceans (including three species of grassshrimps, two species of commercially-important penaeidshrimps, thinstripe hermit crabs Clibanarius vittatus,and juvenile blue crabs Callinectes sapidus), adominant fish (Gobionellus boleosoma), and thedominant mollusc (Littoraria irrorata). By the fallof 1993, however, densities of most nekton specieswere similar among the three created salt marshes. Incontrast, reduced densities of less mobile epifauna(C. vittatusand L. irrorata) persisted in the 92Marshthroughout the 2 years of sampling. The patterns ofnekton utilization exhibited in these marshes suggestthat the 92Marsh reached its maximum habitat supportfunction for these animals in less than 1 year. Comparisons of the older marshes with natural marshesin the bay system, however, suggest that all three ofthese created marshes are functioning at lower levelsthan natural marshes in terms of supporting productionof commercially important fishery species such aspenaeid shrimps and C. sapidus.     

Comprehensive DNA barcodes for species identification and discovery of cryptic diversity in mayfly larvae from South Korea: Implications for freshwater ecosystem biomonitoring

DNA barcoding of aquatic macroinvertebrates holds much promise as a tool for taxonomic research and for providing baseline reference for phylogenetic analysis and aquatic ecosystem biomonitoring. We obtained 112 novel sequences of the barcode region of the mitochondrial DNA cytochrome c oxidase subunit I gene representing 11 families, 25 genera, and 43 species of mayfly (Insecta: Ephemeroptera) from South Korea. No species shared barcode sequences and all can be identified with barcodes with a possible exception of some species. Minimum levels of interspecific genetic distances ranged from 6.7 to 32.9% (mean: 23.7%), whereas average levels of intraspecific divergence was 3.7%. The latter value was inflated by the presence of very high divergences within some taxa. In fact, approximately 33.3% (15/45) of the species included two or more haplotype clusters showing greater than 5.0% sequence divergence and some values were as high as 32.9%. Many of the species with high intraspecific divergences are para‐ or polyphyletic and represent the possibility of species complexes. Our study suggests that type or topotype specimens should be sequenced to identify accurate barcoding clusters with morphological species concepts and also to determine the status of currently synonymized species.     

Little shrimp left on the shelf: the roles that sea‐level change,ocean currents and continental shelf width play in the genetic connectivity of a seagrass‐associated species

Aim Caridean shrimp are diverse and abundant inhabitants of seagrass beds. Anthropogenic disturbances have already reduced and fragmented seagrass habitat, and the rate of change is likely to increase in the future. It is therefore becoming increasingly important to build a basis of understanding of connectivity among populations of seagrass‐associated fauna. Phycomenes zostericola is closely associated with seagrass and makes an ideal study species with which to explore patterns of connectivity and the influence of biogeographic boundaries and historical sea‐level changes on seagrass‐associated species. We hypothesized that strong currents and the high potential of P. zostericola for dispersal and adult movement would result, for the most part, in panmixia. We also hypothesized that if structure was evident, it would occur close to known biogeographic boundaries in Queensland. Location Phycomenes zostericola is an abundant shrimp species distributed throughout Queensland’s seagrass habitats. Nineteen seagrass sites from the Torres Strait Islands and Queensland coastlines were sampled. Methods Molecular sequence data for a 590 base pair fragment of the mitochondrial gene cytochrome c oxidase subunit I (COI) was analysed for 279 specimens of P. zostericola. Phylogeographic patterns were analysed using nested clade phylogeographic analysis (NCPA); an isolation‐by‐distance effect was tested using a Mantel test; the effect of biogeographic boundaries was tested using an analysis of molecular variance (AMOVA), and also a spatial analysis of molecular variance (SAMOVA); demographic expansions were tested for using Tajima’s D, Fu’s F_S and timing estimated using mismatch analysis; the timing of vicariant events was estimated using coalescent analysis (im program). Results Contrary to our original hypothesis, the strong marine currents are not a connective influence among populations of P. zostericola. Regional genetic structure and an isolation‐by‐distance effect are enhanced by existing coastal biogeographic boundaries. Population genetic structure and demographic history are intricately linked to the effects of a tumultuous Pleistocene sea‐level history on the Queensland continental shelf. Main conclusions Connectivity diminishes among populations of P. zostericola over scales larger than a few hundred kilometres. As seagrass habitats world‐wide become increasingly fragmented, low levels of connectivity will result in an isolated future for P. zostericola and other species reliant on seagrass as habitat.     

Widespread prevalence but contrasting patterns of intragenomic rRNA polymorphisms in nematodes: Implications for phylogeny,species delimitation and life history inference

Ribosomal RNA genes have long been a favoured locus in phylogenetic and metabarcoding studies. Within a genome, rRNA loci are organized as tandem repeated arrays and the copies are homogenized through the process of concerted evolution. However, some level of rRNA variation (intragenomic polymorphism) is known to persist and be maintained in the genomes of many species. In nematode worms, the extent of rRNA polymorphism (RP) across species and the evolutionary and life history factors that contribute to the maintenance of intragenomic RP is largely unknown. Here, we present an extensive analysis across 30 terrestrial nematode species representing a range of free‐living and parasitic taxa isolated worldwide. Our results indicate that RP is common and widespread, ribosome function appears to be maintained despite mutational changes, and intragenomic variants are stable in the genome and neutrally evolving. However, levels of variation were varied widely across rRNA locus and species, with some taxa observed to lack RP entirely. Higher levels of RP were significantly correlated with shorter generation time and high reproductive rates, and population‐level factors may play a role in the geographic and phylogenetic structuring of rRNA variants observed in genera such as Rotylenchulus and Pratylenchus. Although RP did not dramatically impact the clustering and recovery of taxa in mock metabarcoding analyses, the present study has significant implications for global biodiversity estimates of nematode species derived from environmental rRNA amplicon studies, as well as our understanding of the evolutionary and ecological factors shaping genetic diversity across the nematode Tree of Life.