The early Permian Crinoid Hypermorphocrinus magnospinosus from Cisuralia

I previously described briefly the crinoid Hypermorphocrinus magnospinosus, with very large spines at the arm bases and at the top of the anal sac. Here I describe it in detail, discuss its taxonomy, and some aspects of its ecology.     

Extremes of Pit Infestation and Growth Deformity in a Crinoid Column,Permian of Timor

Crinoids are diverse and well-known from the Permian of Timor, but the literature has failed to document the numerous specimens of crinoid pluricolumnals from the fauna, many showing unusual morphology or yielding palaeoecological information. A curious and instructive specimen demonstrates the relationship between a living Permian crinoid and coeval invasive, pit-forming, invertebrates in detail. The pit-former is not preserved; most likely it was unmineralized or, if mineralized, then the shell simply dropped out. The infesting organism made pits assigned to the ichnospecies Oichnus paraboloides Bromley. The pit-former was unusually site selective. Either (1) one spatfall attached to just one side of the elevated (either up-current or down-current) or recumbent column and each individual centered their pits on the sutures between adjacent columnals; or (2) a single individual migrated along the column. The living crinoid showed an extreme reaction to this infestation. Excess stereom growth on the side of the pits transformed what was a circular column by addition of a thick, triangular ridge on the pitted side.     

Crinoid holdfasts from the Silurian of Gotland

Crinoid holdfasts occur throughout the Silurian sequence of Gotland, with a marked concentration to reefs and immediate reef surroundings. Four morphological groups are recognized: (1) Discoid holdfasts. (2) Cirriferous holdfasts, represented by (a) Rhizocrinus -like holdfasts, (b) large radices with stout, often branching cirri, and (c) rhizoid holdfasts, formed by a complicated net of pseudocirri. (3) Creeping stems attached to the substrate by thin strands of stereome. (4) Coiling stems. Discoid attachments, cirriferous holdfasts (types b and c) and coiling stems show little preference to substrate and adapt morphologically to conditions at hand. Rhizoid holdfasts display the greatest variation and apparently occur within many different groups of crinoids. Rhizocrinusttke holdfasts have been found only in quiet-water deposits, while creeping stems were concentrated to more turbulent environments. Coiling stems were epizoic, attached to rugose corals, bryozoans, crinoid stems and similar supports. Growth, mode of life (attached or free), settling and fixation of larvae, and relation to substrate and other organisms ate discussed.     

Filtration models, guilds, and biofacies: Crinoid paleoecology of the Stanton Formation (Upper Pennsylvanian), midcontinent, North America

Filtration models make several predictions concerning the distribution of crinoids among benthic habitats: (1) generally, higher energy shoreward settings should contain crinoid assemblages dominated by taxa with dense mesh filtration fans; (2) generally, lower energy offshore settings should be dominated by crinoids with open mesh filtration fans; (3) diversity should be highest in nearshore settings, which generally contain low energy microhabitats within high energy settings where both dense fan and open fan forms can co-occur, whereas offshore assemblages should be dominated by open fan taxa; thus, open fan forms should be more eurytopic than dense fan forms. Also, previous empirical models for crinoid distribution patterns note that nearshore assemblages are dominated by large forms whereas offshore assemblages are dominated by small forms. Filtration fan morphology and body size interact significantly to determine how and where crinoids feed and thus are used here as criteria for distinguishing late Paleozoic crinoid guilds. The distribution patterns of crinoid taxa and guilds among the benthic paleoenvironments of the Upper Pennsylvanian (Missourian) Stanton Formation were used to test the predictions of the filtration models.

The results of quantitative analyses show that large, dense fan crinoids are significantly more abundant in shoreward assemblages than smaller, open fan crinoids, which are more abundant in offshore assemblages; these results are consistent with the aforementioned models. However, diversity patterns are not consistent with the filtration models, indicating that mid-depth and aerobic offshore assemblages are more taxonomically and trophically diverse than nearshore and dysaerobic offshore assemblages, ostensibly due to the overlapping ranges of characteristically nearshore and offshore taxa. Analysis of guild distribution patterns also indicates some contradictions to predicted patterns of stenotopy and eurytopy, indicating additional complexities to late Paleozoic crinoid paleoecology.

Five recurrent crinoid assemblages, or biofacies, have been identified from the Stanton Formation of midcontinent North America. The guild structure and diversity of these biofacies are characterized here as: (1) a moderate diversity nearshore biofacies dominated by large calyx, dense fan guilds; (2) a high diversity midshelf biofacies characterized by equitable contributions of many taxa and guilds; (3) a moderate diversity offshore biofacies dominated by non-pinnulate and small calyx, open fan pinnulate guilds; (4) a low diversity offshore dysaerobic biofacies dominated by small calyx pinnulate guilds; (5) a depauperate offshore biofacies dominated by a unique stalkless species, Paragassizocrinus tarri. Except for Biofacies 5, the number of guilds appears to increase offshore; however, the equitability of taxa among and within the guilds generally decreases offshore. This pattern indicates that the heterogeneity of resources, or the recognition by taxa of different classes of resources, as reflected by the variety of functional types, increased from nearshore to offshore, but that the abundance or accessibility of these resources, and/or the relaxation of competition within guilds, increased from offshore to nearshore.     

Sessile foraminifera of the Hawaiian archipelago: a preliminary survey

As part of the Hawaiian Biological Survey, this study reports on the distribution of nine species of sessile foraminifera collected by dredge, grab, and around the Hawaiian Archipelago. The distributional survey includes data from the frontslopes of coral reefs to depths of 600 m and extends from the island of Hawaii and north to Pearl and Hermes Atoll in the North West Hawaiian Island chain. Species reported for the first time from Hawaii include Calcituba polymorpha, Discanomalina semipunctata, Halyphysema tumanowiczii, agenina divaricans, and Sageninafrondescens. Other sessile forams collected were-Ammolagena clavata, Biarritzina proteiformis, Carpenteria monticularis, and Miniacina miniacea.     

The Structure of Latosillan,a New Differentiation Inducer of Mouse Myeloid Leukemia Cells (M 1)

The structure of latosillan was elucidated by a degradative study and NMR spectral analysis. This revealed that latosillan is a heteroglycan composed of repeating units of the pentasaccharide, →2)-β-d-Man-(1→2)-{β-d-G1CNAC-(1→4)}.-α-l-Rha-(1→4)-α-l-Rha-(1→4)-α-l-Rha-(1→, shown in Fig. 1.     

The Fine Structure of Saprodinium dentatum Lauterborn, 1908 as a Representative of the Odontostomatida (Ciliophora)

The fine structure of the sapropelic ciliate Saprodinium dentatum is described based on phase-contrast microscopy, silver-staining techniques, cryo-fracture scanning electron microscopy, and thin sections. The study concentrates on a detailed analysis of the somatic cortex and the oral ciliature of this highly asymmetric, laterally compressed ciliate. The cell shape is dominated by a number of site-specific spines and the curving course of 10 somatic kineties (SK 1–10). The SK, composed of dikinetids, show an intrakinety differentiation that seems characteristic for other odontostomes as well. The anterior segment of the SK is mostly ciliated, followed by a non-ciliated segment in which the kinetosomes lack all typical fiber systems. Except for SK 4–6, the posterior segment is ciliated again, forming the spine kinetics associated with particular caudal spines. The anterior segment of SK 3 through SK 7 form the frontal band, which together with the two frontal kineties constitutes the main locomotory organelle for a ciliate that creeps on the substratum. A short kinety with inverse polarity, not seen in earlier light microscopical studies, was observed near the oral spine. We made particular effort to find a logical explanation for the observed association of the SK with the various caudal spines. The oral ciliature consists of nine adoral organelles located in a tripartite oral cavity. The absence of a paroral ciliature together with the position of the cytostome anterior to the adoral organelles may be the result of rotational movement of the oral apparatus during the evolution of these bizarre ciliates. Results are discussed with special reference to the phylogenetic relationship of the Odontostomatida to the Heterotrichida and no conclusive answer was found in this first electron microscopical study of an odontostomatid ciliate.     

Structure of lipoprotein (a) studied by spin-labeling

The potent tumor promoter 12-O-tetradecanoylphorbol 13-acetate causes a 2-fold increase in 1,2-diacylglycerol levels within 15–30 min in cultured chick embryo differentiated myoblasts. The weak tumor promoter 12-O-decanoylphorbol 13-acetate was 250 times less effective and the non-promoter 4-α-phorbol 12,13 didecanoate was ineffective at producing this response. During subcellular fractionation, the stimulated portion of the diacylglycerol was distributed similarly to the plasma membrane fraction. Evidence is presented that this diacylglycerol originates from pre-existing lipid rather than from $\text{de}\text{novo}$ synthesis. Possible implications of these findings with regard to the inhibition of myoblast fusion by the tumor promoter are discussed.     

Structure of the integument of a fresh-water teleost,Bagarius bagarius (Ham.) (Sisoridae,pisces)

The skin of Bagarius bagarius (Ham.) is devoid of scales but is rough due to the presence of numerous pentagonal epidermal elevations, which are separated by deep furrows at regular intervals. These elevated pentagonal regions of the epidermis are covered by dead cornified cells in the form of caps. As the old cap goes off a new one is formed by the death of the underlying epidermal cells. The middle layer of the epidermis is mainly composed of well defined polygonal cells. Their cytoplasm is granular in nature and give reactions for protein bound sulphydryl groups. The stratum germinativum is composed of two types of basal cells, the columnar cells and the spherical cells. The flask shaped mucous glands are restricted to the epidermal furrows and secrete either neutral or acidic mucopolysaccharides. Certain large specialysed granular cells are found in the epidermis which are grouped around the taste buds. These specialysed cells may be the photocytes. Two layers of the dermis can be distinguished—the relatively thin stratum laxum and the thick stratum compactum. Dermal papillae mainly support the taste buds. The pigment cells are arranged in two layers in the dermis. The subcutis is composed of loose connective tissues, richly infiltrated with the fat cells, nerves and blood capillaries.     

The Aspartate-Less Receiver (ALR) Domains: Distribution,Structure and Function

Two-component signaling systems are ubiquitous in bacteria, Archaea and plants and play important roles in sensing and responding to environmental stimuli. To propagate a signaling response the typical system employs a sensory histidine kinase that phosphorylates a Receiver (REC) domain on a conserved aspartate (Asp) residue. Although it is known that some REC domains are missing this Asp residue, it remains unclear as to how many of these divergent REC domains exist, what their functional roles are and how they are regulated in the absence of the conserved Asp. Here we have compiled all deposited REC domains missing their phosphorylatable Asp residue, renamed here as the Aspartate-Less Receiver (ALR) domains. Our data show that ALRs are surprisingly common and are enriched for when attached to more rare effector outputs. Analysis of our informatics and the available ALR atomic structures, combined with structural, biochemical and genetic data of the ALR archetype RitR from Streptococcus pneumoniae presented here suggest that ALRs have reorganized their active pockets to instead take on a constitutive regulatory role or accommodate input signals other than Asp phosphorylation, while largely retaining the canonical post-phosphorylation mechanisms and dimeric interface. This work defines ALRs as an atypical REC subclass and provides insights into shared mechanisms of activation between ALR and REC domains.     

Calorimetric Studies of Behavior, Metabolism and Energetics of Sessile Intertidal Animals

SYNOPSIS: Behaviors to conserve water during intertidal exposureat the same time impair respiratory gas exchange, so that observedresponses to emersion may reflect compromises between theseincompatible needs. Behavioral isolation of the tissues fromair results in the complete or partial reliance on anoxic energymetabolism, which is most reliably measured directly as heatdissipation. Combined direct calorimetry and indirect calorimetry(respirometry) enable the partitioning of total metabolic heatdissipation into its aerobic and anoxic components, which mayvary according to physical and biological factors. The musselMytilus edulis is tolerant of anoxia and saves water and energyduring aerial exposure in its rocky intertidal habitat by closingits shell valves and becoming largely anoxic. Like most suspensionfeeders in this habitat, its compensation for reduced feedingtime involves energy conservation; there is little evidencefor energy supplementation such as increases in feeding rateor absorption efficiency. Ammonia production continues duringaerial exposure and is involved in acid-base balance in thehemolymph and mantle cavity fluid. Infaunal cockles (Cardiumedule) and mussels (Geukensia demissa) gape their shell valves,remain largely aerobic and have high rates of heat dissipationduring intertidal exposure, a response which appears relatedto the lower desiccation potential and exploitation of richertrophic resources in their soft-sediment habitats. The variableexpansion of the symbiotic sea anemone Anthopleura elegantissimareflects interaction among the responses to desiccation, irradianceand continued photosynthesis by its zooxanthellae during exposureto air.     

The house of Oikopleura dioica (Tunicata,Appendicularia): Structure and functions

Summary Using appropriate techniques, we have studied in detail the structure and functions of the house of the appendicularian Oikopleura dioica Fol, 1872. In particular, we describe the structure of the inlet funnel, the reinforcing chamber on each side of the tail chamber and its function, the role and the structure of the valves located between the dorsal and water exit chambers and the structure and the role of the exit sphincter. In conclusion, we show that in addition to filtration of particles, movement of the tail also helps location of a favorable particulate environment in the sea.     

Interception of Small Particles by Flocculent Structures, Sessile Ciliates, and the Basic Layer of a Wastewater Biofilm

We investigated attachment processes of hydrophobic and hydrophilic particles (diameter = 1 μm) to mature biofilms grown on clay marbles in a sequencing batch biofilm reactor. During a treatment cycle with filtered wastewater containing different fluorescent beads, the progression of particle density in various biofilm compartments (carrier biofilm, basic biofilm layer, biofilm flocs, and sessile ciliates) was determined by flow cytometry, confocal laser scanning microscopy and automated image analysis. Particles were almost completely removed from wastewater by typical processes of particle retention: up to 58% of particles attached to clay marbles, up to 15% were associated with suspended flocs, and up to 10% were ingested by sessile ciliates. Ingestion of particles by ciliates was exceptionally high immediately after wastewater addition (1,200 particles grazer⁻¹ h⁻¹) and continued until approximately 14% of the water had been cleared by ciliate filter feeding. Most probably, ciliate bioturbation increases particle sorption to the basic biofilm. Backwashing of the reactor detached pieces of biofilm and thus released approximately 50% of the particles into rinsing water. Clay marbles in the upper part of the reactor were more efficiently abraded than in the lower part. No indications for selective attachment of the applied hydrophobic and hydrophilic beads were found. As a consequence of interception patterns, organisms at elevated biofilm structures are probably major profiteers of wastewater particles; among them, ciliates may be of major importance because of their highly active digestive food vacuoles.     

Structure of a Gla-containing dipeptide. The crystal structure of (+/-)-N-carbobenzoxy-(gamma,gamma'-DI-tertbutyl)-gamma-carboxyglutamylglycine ethyl ester

The crystal and molecular structure of a dipeptide containing a blocked gamma-carboxyglutamyl (Gla) residue is presented. Two intermolecular hydrogen bonds link the amides with carbonyl groups in the dipeptide backbone, but the protected gamma-carboxy groups on the modified glutamic acid are not hydrogen bonded.     

The Solution Structure of a Locked Nucleic Acid (LNA) Hybridized to DNA

Abstract

LNA (Locked Nucleic Acids) is a novel oligonucleotide analogue containing a conformationally restricted nucleotide with a 2′-0, 4′-C-methylene bridge that induces unprecedented thermal affinities when mixed with complementary single stranded DNA and RNA. We have used two-dimensional'H NMR spectroscopy obtained at 750 and 500 MHz to determine a high resolution solution structure of an LNA oligonucleotide hybridized to the complementary DNA strand. The determination of the structure was based on a complete relaxation matrix analysis of the NOESY cross peaks followed by restrained molecular dynamics calculations. Forty final structures were generated for the duplex from A-type and B-type dsDNA starting structures. The root-mean-square deviation (RMSD) of the coordinates for the forty structures of the complex was 0.32Å. The structures were analysed by use of calculated helix parameters. This showed that the values for rise and buckle in the LNA duplex is markedly different from canonical B-DNA at the modification site. A value of twist similar to A-DNA is also observed at the modification site. The overall length of the helix which is 27.3Å. The average twist over the sequence are 35.9° ± 0.3°. Consequently, the modification does not cause the helix to unwind. The bis-intercalation of the thiazole orange dye TOTO to the LNA duplex was also investigated by ¹H NMR spectroscopy to sense the structural change from the unmodified oligonucleotide. We observed that the bis-intercalation of TOTO is much less favourable in the 5′-CT^LAG-3′ site than in the unmodified 5′-CT^LAG-3′ site. This was related to the change in the base stacking of the LNA duplex compared to the unmodified duplex.     

Structure of photoreceptors ofpolystoma integerrimum (platyhelminths,monogenea)

Summary The structure of the eyespots of the free-swimming larva ofPolystoma integerrimum (Monogenea, Polystomatidae) was studied by electron microscopy. Each eyespot is rhabdomeric in type, with one cup-shaped supportive cell and one sensory cell. The supportive cell is characterized by concentric rows of platelets, separated by 120 nm. This entirely new structure in a platyhelminth acts like a concave mirror of a telescope in concentrating the light. Moreover, at each interface of lamellae of platelets, light is amplified. InPolystoma, the light concentration occurs by reflection whereas it occurs by refraction in all other platyhelminths studied up to now. Among the monogenean Trematodes, all the Polystomatidae appear to present this reflecting system.