Indoleamines and the eccentric cells of the Limulus lateral eye

The lateral eye of the horseshoe crab, Limulus polyphemus, was studied by fluorescence microscopy according to Falck and Hillarp and microspectrofluorometry for identifying neuronal monoamines. After the formaldehyde treatment, the eccentric cells and their axons have a yellowish, rapidly fading fluorescence, such as is seen with 5-hydroxytryptamine. The microspectrofluorometric analysis was compatible with the fluorescence being caused by an indole, which could not be definitely identified, however. The eccentric cells have the ability to accumulate indoleamines such as 5-hydroxytryptamine, 6-hydroxytryptamine and 5,6-dihydroxytryptamine. Their axons were best demonstrated after being loaded with 6-hydroxytryptamine. Characteristic varicose terminals were seen in the neuropil, often arranged in clusters. Other terminals, possibly originating from the eccentric cells, were also seen among the pigment cells in the basal part of the ommatidia.     

The Seventh Annual Bio-Ontologies Meeting Moat House Hotel, Glasgow, 30 July 2004

The Annual Bio-Ontologies Meeting has now reached its seventh consecutive year, running as a special interest group (SIG) of the much larger ISMB conference. This year's meeting in Glasgow had approximately 100 attendees. Since the advent of the Gene Ontology, which coincided with the first Bio-Ontologies Meeting, we have seen a year-on-year strengthening of the field; bio-ontologies has moved from being dominated by computer science to be led by biological applications; discussion is less about 'what is an ontology?' and more about 'how to build an ontology which is fit for purpose?'. This strengthening of the field can be seen elsewhere. Both the main ISMB conference and this year's Pacific Symposium on Biocomputing (PSB) have seen a large number of submissions to their ontologies track. For the first time a selection of the papers from the SIG is being published in this issue of Comparative and Functional Genomics. We hope that this will complement the publications of the larger conferences, bringing to a wider audience the cutting edge research that characterizes the Bio-Ontologies SIG.     

Robusta-Natalensis Pair. Sp. 30. C. Robusta. Sp.31. C. Natalensis.

T he two giants of the genus-that is so far as the cock birds are concerned, but, as with chiniana and a few others, their hens are so much smaller that even when in the field the two sexes are seen in company one may often doubt their being a pair of the same species.     

Good clinical teachers likely to be specialist role models: results from a multicenter cross-sectional survey

Context

Medical educational reform includes enhancing role modelling of clinical teachers. This requires faculty being aware of their role model status and performance. We developed the System for Evaluation of Teaching Qualities (SETQ) to generate individualized feedback on previously defined teaching qualities and role model status for faculty in (non) academic hospitals.

Objectives

(i) To examine whether teaching qualities of faculty were associated with their being seen as a specialist role model by residents, and (ii) to investigate whether those associations differed across residency years and specialties.

Methods & Materials

Cross-sectional questionnaire survey amongst 549 Residents of 36 teaching programs in 15 hospitals in the Netherlands. The main outcome measure was faculty being seen as specialist role models by residents. Statistical analyses included (i) Pearson''s correlation coefficients and (ii) multivariable logistic generalized estimating equations to assess the (adjusted) associations between each of five teaching qualities and ‘being seen as a role model’.

Results

407 residents completed a total of 4123 evaluations of 662 faculty. All teaching qualities were positively correlated with ‘being seen as a role model’ with correlation coefficients ranging from 0.49 for ‘evaluation of residents’ to 0.64 for ‘learning climate’ (P<0.001). Faculty most likely to be seen as good role models were those rated highly on ‘feedback’ (odds ratio 2.91, 95% CI: 2.41–3.51), ‘a professional attitude towards residents’ (OR 2.70, 95% CI: 2.34–3.10) and ‘creating a positive learning climate’ (OR 2.45, 95% CI: 1.97–3.04). Results did not seem to vary much across residency years. The relative strength of associations between teaching qualities and being seen as a role model were more distinct when comparing specialties.

Conclusions

Good clinical educators are more likely to be seen as specialist role models for most residents.     

Light optical and electron microscopy research on the cyst-forming coccidium Sarcocystis muris

Part of the complicated life cycle of Sarcocystis muris, confined to the muscle cyst (sarcocyst), has been studied by light and electron microscopy. The early development of the sarcocyst proceeds strictly intracellularly, whereas the older and larger cysts tend to destroy the harbouring muscle cell, and since then their development seems to be intercellular rather than intracellular. Three different cell types are distinguished within the growing sarcocyst of S. muris differing from each other both structurally and functionally: metrocytes, intermediate cells and merozoites. These differ as well in the structure of their nuclei. The metrocyte nuclear chromatin is mainly in decondensed state with some minute granules taking the central part of the nucleus. The condensed chromatin of the intermediate cell is accumulated into some relatively large peripheral granules, whereas numerous RNP-granules appear in the karyolymph. The nuclear chromatin of merozoites is condensed to be seen as separate chromocenters scattered over the nucleus; the karyolymph is packed with RNP-granules. Metrocytes are seen to divide in young sarcocysts, although the mode of their division is still obscure. In sarcocysts of advanced age (2.5 months or more), only intermediate cells are seen to divide, their mode of division being endodyogeny.     

Early contacts between fibroblasts. An ultrastructural study

Pairs of chick heart fibroblasts have been studied with the light microscope and then fixed in situ for electron microscopy at varying times after they have been seen to make contact with each other. The resultant electron micrographs show that areas of specialisation begin to develop within 20 sec of the contact being made. These specialisations resemble those seen in isolated chick heart fibroblasts where the cell comes close to the substrate and are thought to be areas of adhesion. The development of these areas and their associated microfilaments is described and an attempt is made to correlate this with the stages of the contact inhibition phenomenon.     

Structural Changes in the Embryonic Axis of Theobroma cacao L., during Germination and Early Seedling Establishment

The changes occurring in the axis of the developing seedlingof Theobroma cacao L. were observed over a 96-h period. It wasfound that during the first 24-h period, greatest change hadoccurred in the hypocotyl; the epicotyl and the root meristemhad apparently remained dormant. In the hypocotyl, vascularizationwhich had begun in the mature embryo continued: starch grainshad disappeared from the cells of the cortex and pith, the latterof which were seen to be binucleate. During the second 24-hperiod, greatest change was seen to have taken place in theroot meristem, resulting in the production of a root which consistedof a central pith, a poly-arch stele, and cortical tissue. Betweenthe root and the hypocotyl an apparently undifferentiated regionwas observed. This region was seen to have differentiated duringthe third 24-h period, leading to the production of a completering of xylem, external to which were groups of phloem, theformer being separated from the latter by parenchymatous tissue.This region is interpreted as being transitional between rootand shoot. During the fourth 24-h period, the adventitious andlateral root primordia initiated earlier, were seen to havedifferentiated to the extent that the disposition of their tissueswas evident.     

Seasonal rhythmics of the leucoplast structure in bulb scales of Scilla sibirica L

A study was made of seasonal changes in plastids of ground tissue cells of bulb scales in early-spring ephemeroid Scilla sibirica L. In summer, plastids are represented by typical amyloplasts, with their main volume (97.0 +/- 4.3%) being occupied by one large starch grain. The volume fraction of plastid stroma is at its minimum. The stroma contains small plastoglobuli and no thylakoids. The same structure is characteristic of plastids in October. However, no starch is found in December, when some thylakoids are seen at the plastid periphery. In the early spring (March), when leaves still remain below the ground, the volume fraction of starch grains is 53.0 +/- 2.2%. In the stroma some structures superficially similar to those of microtubuli are revealed. The thylakoid system is fairly well developed, some of thylakoids being concentrically arranged. Some electron-opaque material is seen in the thylakoid lumen. Many plastids are sheathed with elements of the smooth endoplasmic reticulum. Based on the analysis of these and literature data, a conclusion is made that plastids of bulb scales not only store starch, but also seemingly participate in phytohormone biosynthesis.     

Injuries of the spine sustained during gymnastic activities.

Between 1954 and 1984, 38 patients were seen as a result of gymnastic activities. Thirty three were men, five were women, and their ages ranged from 12 to 54, the mean age being 20. Thirty one had spinal injuries (28 in the cervical region, three in the thoracolumbar region), two no definite injury, and for five the information was incomplete. The accidents occurred largely because gymnasts landed on their heads, the force being transmitted to the cervical spine. Most took place in gymnasiums and were caused by a failure of supervision.     

Do chimpanzees know what conspecifics know?

We conducted three experiments on social problem solving by chimpanzees, Pan troglodytes. In each experiment a subordinate and a dominant individual competed for food, which was placed in various ways on the subordinate's side of two opaque barriers. In some conditions dominants had not seen the food hidden, or food they had seen hidden was moved elsewhere when they were not watching (whereas in control conditions they saw the food being hidden or moved). At the same time, subordinates always saw the entire baiting procedure and could monitor the visual access of their dominant competitor as well. If subordinates were sensitive to what dominants did or did not see during baiting, they should have preferentially approached and retrieved the food that dominants had not seen hidden or moved. This is what they did in experiment 1 when dominants were either uninformed or misinformed about the food's location. In experiment 2 subordinates recognized, and adjusted their behaviour accordingly, when the dominant individual who witnessed the hiding was replaced with another dominant individual who had not witnessed it, thus demonstrating their ability to keep track of precisely who has witnessed what. In experiment 3 subordinates did not choose consistently between two pieces of hidden food, one of which dominants had seen hidden and one of which they had not seen hidden. However, their failure in this experiment was likely to be due to the changed nature of the competition under these circumstances and not to a failure of social-cognitive skills. These findings suggest that at least in some situations (i.e. competition with conspecifics) chimpanzees know what conspecifics have and have not seen (do and do not know), and that they use this information to devise effective social-cognitive strategies. Copyright 2001 The Association for the Study of Animal Behaviour.     

Germ-cell origin in the adult caecilian Ichthyophis glutinosus (Linn)

Summary In Ichthyophis glutinosus, no residual spermatogonia traceable to primordial germ cells of the embryo are seen, the primary spermatogonia of each season being formed afresh. Their only source so far as the adult is concerned, is the lining of the collecting duct and its numerous branches which ramify in the testis. No evidences of their origin from the surface epithelial cells of the testis, stromal cells or nurse cells are seen.     

Attitudes and advice after myocardial infarction.

While medical opinion increasingly favours an active approach to rehabilitation after myocardial infarction, interviews with 40 patients and their relatives showed a low degree of understanding of medical advice and information. There was general satisfaction with treatment, but communication was seen as often being inadequate, vague, and conflicting.     

Parents' perceptions of food intolerance in primary school children.

In a study of about 7000 children, parents'' perceptions were used to examine the prevalence of food intolerance, the types of food implicated, the association of intolerance with diseases, and the social background of those identified as being food intolerant. One hundred and ninety two children (3%) were perceived as being food intolerant, with a further 105 (2%) being classed as intolerant under a less stringent definition of intolerance. For 128 (67%) of these children a doctor was consulted. The pattern of food avoided was very similar in children for whom the decision to exclude certain foods was made by health staff and in those for whom the parents themselves made decisions about their child''s diet. A strong association was seen between the mother''s level of education and the child being perceived as being food intolerant. Between 20% and 30% of children with a disease associated with food intolerance--for example, eczema--had currently or previously avoided some types of food. The results of this study emphasise the need to develop criteria to tackle the growing demand for National Health Service treatment by parents who believe their child to be food intolerant.     

Anatomical and neurohistological observations on the tongue of the India goat, Capra aegagrus.

The anatomy and neurohistology of the tongue of the Indian goat, Capra aegagrus, have been described. The apex linguae is notched in the centre. The foramen caecum is found to be absent. The sublingua could not be traced. The filiform papillae are the most common and divided into three types: the simple, giant, and true filiform papillae. The true filiform papillae are the most developed of the three types. The foliate papillae are absent. There are 13--14 circumvallate papillae arranged in two rows in a V-shaped pattern. The fungiform papillae are large and could easily be seen with the naked eye. They are scattered over the entire dorsum, being in abundance at the tip. The tongue of the goat is richly innervated. On the dorsum, the lamina propria is innervated by thick nerve fibres. In the fungiform papillae quite a large number of nerve fibres could be seen. The circumvallate papillae are also abundantly provided with nerves. A few ganglion cells are found below the circumvallate papillae. Thick nerve fibres are seen across the numerous glands and their ducts. Muscle fibres and connective tissue are also richly innervated.     

AGMIAL: implementing an annotation strategy for prokaryote genomes as a distributed system

We have implemented a genome annotation system for prokaryotes called AGMIAL. Our approach embodies a number of key principles. First, expert manual annotators are seen as a critical component of the overall system; user interfaces were cyclically refined to satisfy their needs. Second, the overall process should be orchestrated in terms of a global annotation strategy; this facilitates coordination between a team of annotators and automatic data analysis. Third, the annotation strategy should allow progressive and incremental annotation from a time when only a few draft contigs are available, to when a final finished assembly is produced. The overall architecture employed is modular and extensible, being based on the W3 standard Web services framework. Specialized modules interact with two independent core modules that are used to annotate, respectively, genomic and protein sequences. AGMIAL is currently being used by several INRA laboratories to analyze genomes of bacteria relevant to the food-processing industry, and is distributed under an open source license.     

Interaction between area effects and variation with habitat in Cepaea

Populations of Cepaea nemoralis in Warwickshire occupy habitats of considerable temporal stability, most being at least 250 years old, and some much older. As expected from earlier work, shell pattern polymorphisms in these populations show variation with habitat of a kind suggesting the operation of visual selection for crypsis. They also show patterns of microgeographical variation unrelated to habitat. Although of a less extreme character, this variation resembles the 'area effects' seen in downland populations of Cepaea , in the lack of coincidence of variation at different loci, and in the existence of stronger and larger scale patterns in banding than in colour morphs. A similar explanation is advanced for their occurrence: previous bottlenecks and colonization from small relicts with founder effects. The less marked character of the variation is expected from the greater habitat stability and continuity in Warwickshire compared with downland. A clear colonization effect is seen in the inverse relationship between age of habitat and frequency of yellow in woodland populations. The results suggest that population histories affect variation in Cepaea even in areas of relative habitat stability.     

The seasonal occurrence and behaviour of Killer whales Orcinus orca, at Marion Island

The paper describes the occurrence of Killer whales at Marion Island (Prince Edward group) in the south Indian Ocean from August 1973 to November 1976. They occur seasonally, being most numerous from October to December. Their occurrence is synchronized with the seasonal haul out of Southern elephant seals, but the seasonality of King, Rockhopper and Macaroni penguins is also likely to influence their occurrence. The largest herds occur in October, the month during which mean group size is also largest. Sex and age composition are given, adult males being significantly more numerous than adult females, while 36–3 % of the latter had calves. Hunting activity appears to be greatest between 15.00 and 17.00 hrs, and most Killer whales were seen within 100 m of the shore. Aspects of hunting, attacking, feeding and resting behaviour are discussed. The body measurements of a young male found on a beach are given.     

Are significant numbers of abnormal cells lost on the discarded ThinPrep® broom when used for cervical cytology?

A. Umana, H. Dunsmore, A. Herbert, A. Jokhan and A. Kubba
Are significant numbers of abnormal cells lost on the discarded ThinPrep® broom when used for cervical cytology? Background: In view of a study with SurePath® showing that cells were lost on the broom if it was discarded, we decided to investigate whether cells were lost on the ThinPrep® (TP) broom, which is discarded according to the manufacturer’s protocol. Aim: To determine whether significant amounts of cellular material are lost on the discarded TP broom, and whether the loss is operator dependent. Methods: Three hundred and six women attending the Guy’s Hospital Colposcopy Unit gave their consent for TP liquid‐based cytology samples to be taken and the broom immersed in a second vial instead of being discarded. The cellularity of the first and second vials was compared by counting cells in 10 ×40 high‐power fields (HPFs). The significance of cell loss was ascertained by correlating the likelihood of abnormal cells and transformation zone (TZ) material being present with the degree of cellularity of the two vials. Results: More than 10 cells per HPF were seen in 3.2%, 19.4% and 35.8% of slides from the second vial taken by three experienced colposcopists, which was significantly different between them (P < 0.001); cellularity of the first vial was not significantly different between colposcopists but the one with highest cellularity in the first vial discarded most in the second. Abnormal cells were more likely to be seen in slides with more than 10 cells per HPF (P < 0.001) and with evidence of TZ sampling (P < 0.001), but there was no preferential loss of TZ material in the second vial. Of 126 slides with abnormal cells on the slides from the second vial, 113 (89.7%) were also present on the significantly more cellular first vial (P < 0.001). Conclusion: Abnormal cells were potentially lost on the broom, but were usually represented in the first vial. The likelihood of abnormal cells being discarded was operator dependent in this small study, but this did not affect the quality of the initial preparation. The likelihood of abnormal cells being seen on TP slides was dependent on their cellularity, which provided our laboratory with a criterion for the assessment of sample adequacy.     

The induction of autophagy by mechanical stress

The ability to respond and adapt to changes in the physical environment is a universal and essential cellular property. Here we demonstrated that cells respond to mechanical compressive stress by rapidly inducing autophagosome formation. We measured this response in both Dictyostelium and mammalian cells, indicating that this is an evolutionarily conserved, general response to mechanical stress. In Dictyostelium, the number of autophagosomes increased 20-fold within 10 min of 1 kPa pressure being applied and a similar response was seen in mammalian cells after 30 min. We showed in both cell types that autophagy is highly sensitive to changes in mechanical pressure and the response is graduated, with half-maximal responses at ~0.2 kPa, similar to other mechano-sensitive responses. We further showed that the mechanical induction of autophagy is TOR-independent and transient, lasting until the cells adapt to their new environment and recover their shape. The autophagic response is therefore part of an integrated response to mechanical challenge, allowing cells to cope with a continuously changing physical environment.