The Structures and Dynamics of Fish Communities in an Okinawan Coral Reef: Effects of Coral-based Habitat Structures at Sites with Rocky and Sandy Sea Bottoms

Although there have been many studies on ecological factors responsible for the organization of reef fish communities, most of the studies have focused on isolated habitats. However, findings from isolated habitats cannot necessarily be applied to fish communities in other habitats (e.g., a continuous habitat). In this study, therefore, we examined the structures of fish communities (abundance, species richness and species composition), and the dynamics of fish communities (seasonal changes in abundance, species richness and species composition) over a 2-year period in two different habitats (continuous habitat and isolated habitat) in an Okinawan coral reef. We established eight permanent quadrats (8m × 8m) on a rocky reef flat (continuous habitat) and rock reef patches surrounded by a sandy sea bottom (isolated habitat). The abundance and species richness of fishes such as pomacentrids, labrids, chaetodontids and acanthurids were greater in quadrats located in the continuous habitat, whereas those of blenniids, gobiids and mullids were greater in quadrats located in the isolated habitat. This caused marked differences between the fish community structure at the two sites. Seasonal and annual changes in fish community structure were relatively small at the continuous habitat site (>0.7 similarity based on C index) but were large at the isolated habitat site (C < 0.4), indicating that the fish community structure was relatively stable at the continuous habitat site but unstable at the isolated habitat site throughout the study period. Spatial differences between the fish community structures in the four quadrats at the continuous habitat site were small (C > 0.65 in most sites), but these differences were large at the isolated habitat site (C < 0.4). Our findings suggest that habitat structure (spatial arrangement of habitats) affects both spatial and seasonal differences in the reef fish community structure. The results also suggest that the main mechanisms underlying organization of reef fish communities in continuous and isolated habitats are different.     

Grassland dynamics under sheep grazing in an Australian Mediterranean type climate

Grassland dynamics in a degraded disclimax grassland dominated by Danthonia caespitosa Gaudich. are examined using both demographic and multivariate approaches in an experiment designed to determine the effect of grazing intensity and exclosure on pasture dynamics. The experiment ran for 20 years from 1949 to 1968, using permanent quadrats at 3 grazing intensities and within exclosures. Demographic studies of some perennial grass species demonstrated markedly different responses to grazing; Danthonia caespitosa was unaffected by grazing but responsive to seasonal rainfall differences. Enteropogon acicularis survived only on protected sites. Numerical classification of total species set (121 species) for six observation periods demonstrated that community types were sensitive to differences in winter rainfall, and time since the start of experiment. Principal component analysis of permanent quadrat observations for individual years demonstrates quadrat trajectories which confirm this and indicate progressive divergence of the successional trends of the grazed and ungrazed quadrats. Repeated analysis on grazed quadrats only, shows that three components of pasture dynamics can be recognized; these are trend (succession?) and seasonal differences, each of which account for about 20% of the variance, and differences due to soil heterogeneity in the experimental paddock (8% of variance accounted for). No effect of grazing intensity was detected. Multivariate techniques can provide a clear partitioning of types of dynamic behaviour present in grassland communities. It is concluded that partitioning of environmental heterogeneity prior to demographic studies would increase their sensitivity.

     

Testing methods to estimate abundance of Magellanic Penguins Spheniscus magellanicus

Capsule Using simulations in a geographical information system our results showed that systematic sampling with quadrats was the most accurate, precise and cost-effective method to survey Magellanic Penguin colonies.

Aims To determine which sampling method gives better estimations of penguin abundance.

Methods A virtual colony was generated deriving spatial parameters from a real survey and applying Kriging interpolation. Three sampling methods were then applied on this virtual colony: random sampling with quadrats; systematic sampling with quadrats; systematic sampling with fixed-width transects. The estimated abundance for each trial was compared to the abundance of the virtual colony to have a measure of accuracy and precision.

Results Systematic sampling with quadrats estimated penguin abundance better than random or systematic sampling with transects since it achieved 100% accuracy and great precision after sampling only 2.1% of the virtual colony.

Conclusion The use of a simulated colony allowed the comparison of several sampling methods traditionally used in Magellanic Penguin surveys. The results of this study are important in order to standardize sampling protocols for Magellanic Penguins and to have more comparable estimations to detect trends over time. Also, the methodological approach used here could be used to assess sampling methods for other colonial bird species.     

Long‐term vegetation changes in experimentally grazed and ungrazed back‐barrier marshes in the Wadden Sea

Abstract. Vegetation succession in three back‐barrier salt marshes in the Wadden Sea was studied using a data set comprising 25 years of vegetation development recorded at permanent quadrats. The effect of livestock grazing on succession was assessed by comparing quadrats where grazing was experimentally prevented or imposed. We studied changes at the species level as well as at the level of the plant community. Special attention is given to effects on plant species richness and community characteristics that are relevant for lagomorphs (hares and rabbits) and geese. Inundation frequency and grazing were most important in explaining the variation in species abundance data. The three marshes studied overlap in the occurrence of different plant communities and the observed patterns were consistent between them. Clear differences in frequency and abundance of plant species were observed related to grazing. Most plant species had a greater incidence in grazed treatments. Species richness increased with elevation, and was 1.5 to 2 × higher in the grazed salt marsh. Grazing negatively influenced Atriplex portulacoides and Elymus athericus, whereas Puccinellia maritima and Festuca rubra showed a positive response. The communities dominated by Elymus athericus, Artemisia maritima and Atriplex portulacoides were restricted to the ungrazed marsh. Communities dominated by Puccinellia maritima, Juncus gerardi and Festuca rubra predominantly occurred at grazed sites. As small vertebrate herbivores prefer these plants and communities for foraging, livestock grazing thus facilitates for them.     

Impact of grazing on vegetation dynamics in former ricefields

Abstract. In the Rhône delta, Juncus gerardi and Scirpus maritimus are often the dominant species in abandoned rice fields which are artificially flooded in early spring to improve forage production. Under these conditions they occur either in mixed communities, or form monospecific stands. Monitoring the vegetation dynamics in quadrats located in six abandoned rice fields artificially flooded from November to April confirmed the important role of grazing. In ungrazed plots, communities dominated by Scirpus maritimus mixed with Juncus gerardi developed fast. After 42 months of management Scirpus maritimus had established in nearly all quadrats and continued to expand, whereas Juncus gerardi had started to decline. In grazed plots Juncus gerardi alone dominated and continued to increase in cover up to the 42nd month. Scirpus maritimus established at low densities mainly in quadrats where Juncus gerardi was initially absent. Introduction of seeds of Scirpus maritimus in communities of Juncus gerardi under controlled conditions demonstrated the existence of the phenomenon of preemption. The increase in cover of Juncus gerardi suggests that the preemption of Juncus gerardi over Scirpus maritimus plays a more pronounced role in the field in the presence of grazing.     

In situ experiments on the effects of increased sediment loads on littoral rocky shore communities in Lake Tanganyika, East Africa

1. Two in situ experiments investigated the responses to artificially increased sediment loads of the gastropod and fish communities, and of the whole benthos, of the rocky shores of Lake Tanganyika. Sediments were emptied once onto randomly selected quadrats using SCUBA, with control quadrats receiving no addition of sediment. Quadrats were monitored up to 6 months after sediment addition. 2. While the abundance of Lavigeria grandis (Mollusca; Gastropoda) was reduced greatly by the addition of sediment, low abundance and biomass of the whole gastropod community on sediment‐impacted quadrats 6 months after sediment addition suggests more general impacts of inundation in the longer term. 3. Benthic invertebrate communities inundated by sediment had significantly fewer individuals and numbers of taxa than control communities. No significant community recovery was recorded on sediment‐impacted quadrats within the timescale of the experiment. A short‐term period of high turbidity brought about by the emptying of sediments onto sediment‐impacted quadrats also caused severe decreases in benthic invertebrate abundance on controls 10 days after sediment addition. This suggests that even short‐term pulses of sediment may have significant detrimental effects on littoral communities. 4. Although significant impacts of sediment on fish community dynamics were found, and a significant reduction in the number of benthic algivorous species was recorded immediately after sediment addition, littoral fish communities showed strong resistance overall to the addition of sediments. This apparent resistance, however, may be a consequence of the small scale at which the experiment took place. Littoral fish communities were also shown to be more dynamic than indicated previously.     

The identification of the seeds and fruits of common Scottish aquatic herbs

Background: There have been few quantitative observations of the attributes of native animal paths and no studies of their variation between vegetation types. These paths may be important in extending the local ranges of plant species.

Aims: To determine the incidence, cover and characteristics of native animal paths in different vegetation types, their relationships with other variables and the influence of paths on plant species distributions.

Methods: Randomly located line transects, and paired quadrats on and adjacent to paths, were used to record path and environmental attributes at 10 sites in each of 10 vegetation types. The relationships between path cover, number, width and depth and potential predictor variables were determined by using Pearsons product moment correlation.

Results: The mean cover of paths in plant communities varied between 6.5% and 12.6%. Path cover, number, width and depth varied between vegetation types. Penetration resistance, bare ground, scat density and plant species richness had higher values in path quadrats than in controls. Within particular vegetation types, several plant species were restricted to paths.

Conclusions: Animal trampling is an important influence on vegetation structure and the distribution of plant species in the study area.     

Abundance estimation of rocky shore invertebrates at small spatial scale by high-resolution digital photography and digital image analysis

We have tested both the usefulness of high-resolution digital photography for data acquisition and digital image analysis, by non-supervised classification and high pass filter, for recognition and abundance estimation of benthic intertidal organisms. These digital tools were compared with visual scan and photo quadrat conventional methods. The comparison was done using 40 quadrats (10×5 cm) randomly selected along a 5-m transect on the rocky shore of the Pemaquid Point, Maine, USA. ANOVA for repeated measures was used to test differences among methods. Monte Carlo simulation analysis was used to explore differences among methods over a large set of data (n=100, 500, 1000 quadrats). Differences among methods were observed when 40 quadrats were used. Tukey multiple comparison test showed that abundance estimation from visual scan, photo quadrat and digital image analysis by high pass filter do not differ significantly among them but differ from non-supervised classification results. Due to its accurate estimation, high pass filter (Prewitt) method was chosen as the most reliable digital method to estimate species abundance. Monte Carlo simulation of visual scan, photo quadrat and high pass filter results showed significant differences when the number of quadrats was larger. These results showed that the combined use of digital photography and digital image analysis techniques for the acquisition and analysis of recorded data is a powerful method for the study of intertidal benthic organisms. Results produced using these techniques were similar than those produced by conventional methods but were obtained in a much-reduced time.     

Spatial patterns of hypolithic cyanobacterial diversity in Northern Australia

Photosynthetic microbial communities under translucent rocks (hypolithic) are found in many arid regions. At the global scale, there has been little intercontinental gene flow, and at a local scale, microbial composition is related to fine‐scale features of the rocks and their environment. Few studies have investigated patterns of hypolithic community composition at intermediate distances. We examined hypolithic cyanobacterial diversity in semi‐arid Australia along a 10‐km transect by sampling six rocks from four adjacent 1 m² quadrats (“distance zero”) and from additional quadrats at 10, 100, 1,000, and 10,000 m to test the hypothesis that diversity would increase with the number of rocks sampled and distance. A total of 3,108 cyanobacterial operational taxonomic units (OTUs) were detected. Most were neither widespread nor abundant. The few that were widespread tended to be abundant. There was no difference in the community composition between the four sites at distance zero, but the samples 10 m away were significantly different, as were those at all other distances compared to distance zero. Many additional OTUs were recorded with increasing distance up to 100 m. These patterns of distribution are consistent with a colonization model involving dispersal from rock to rock. Our results indicate that distance was a significant factor that can be confounded by interrock differences. Most diversity was represented in the first 100 m of the transect, with an additional 1.5% of the total diversity added by the sample at 1 km, but only 0.2% added with the addition of the 10‐km site.     

Establishment of two dry monsoon forest tree species on a fire-protected monsoon forest-savanna boundary,Cobourg Peninsula,northern Australia

Abstract A numerical classification of presence-absence data of vascular plant species on a transect across a dry monsoon foresl-Eucalyptus savanna boundary at Cobourg Peninsula was used to define savanna, ecotone or monsoon forest communities. The boundary was protected from fire. After 4 years no Aglaia rufa seedlings had established in 24 permanent quadrats (1 × 4 m) in the savanna while three Diospyros maritima seedlings established in these savanna quadrats. The number of established A. rufa seedlings in 26 ecotone quadrats fell by 50% to one individual, the number of D. maritima seedlings increased by 43% to a total of seven individuals. After 3 months significantly more transplanted D. maritima seedlings had died in the savanna than the monsoon forest, but survival of A. rufa was high, and not significantly different, in both communities. Seedlings from both species did not have significantly greater survival in the monsoon forest compared to the savanna, 42 months after transplantation.     

Checkerboard score–area relationships reveal spatial scales of plant community structure

Identifying the spatial scale at which particular mechanisms influence plant community assembly is crucial to understanding the mechanisms structuring communities. It has long been recognized that many elements of community structure are sensitive to area; however the majority of studies examining patterns of community structure use a single relatively small sampling area. As different assembly mechanisms likely cause patterns at different scales we investigate how plant species co‐occurrence patterns change with sampling unit scale. We use the checkerboard score as an index of species segregation, and examine species C‐score1–sampling area patterns in two ways. First, we show via numerical simulation that the C‐score–area relationship is necessarily hump shaped with respect to sample plot area. Second we examine empirical C‐score–area relationships in arctic tundra, grassland, boreal forest and tropical forest communities. The minimum sampling scale where species co‐occurrence patterns were significantly different from the null model expectation was at 0.1 m² in the tundra, 0.2 m² in grassland, and 0.2 ha in both the boreal and tropical forests. Species were most segregated in their co‐occurrence (maximum C‐score) at 0.3 m² in the tundra (0.54 3 0.54 m quadrats), 1.5 m² in the grassland (1.2 3 1.2 m quadrats), 0.26 ha in the tropical forest (71 3 71 m quadrats), and a maximum was not reached at the largest sampling scale of 1.4 ha in the boreal forest. The most important finding is that the dominant scales of community structure in these systems are large relative to plant body size, and hence we infer that the dominant mechanisms structuring these communities must be at similarly large scales. This provides a method for identifying the spatial scales at which communities are maximally structured; ecologists can use this information to develop hypotheses and experiments to test scale‐specific mechanisms that structure communities.     

Interactions between winter and summer annuals in the Chihuahuan Desert

Using 18 years of census data from permanent quadrats, we examined the interactions between spatially coexisting but temporally segregated winter and summer ephemeral plant communities in the Chihuahuan Desert. The ability of winter and summer annuals to achieve nearly complete temporal segregation by partitioning the bimodal annual rainfall permits the coexistence of a diverse flora of annual (and perennial) plants in this unproductive arid environment. Despite the differences in their biogeographical affinities and temporal segregation, long-term data indicated that at the scales of both the entire 20-ha study site and small 0.25-m² sample quadrats, abundances of plants were never high in two successive growing seasons, suggesting a negative interaction between winter and summer annuals. We evaluate alternative hypotheses for this phenomenon. Received: 22 February 1996 / Accepted: 16 September 1996     

Floristic diversity and the richness of locally endangered plant species of semi-natural grasslands under different management practices,southern Kyushu,Japan

Background: The rapid decline of semi-natural grasslands in Japan threatens many relic and endemic plant species. There is insufficient knowledge on how the impacts of land-use changes and management of grasslands have been affecting grassland ecosystems and what conservation measures may be taken to conserve as much of the existing plant diversity as possible.

Aim: We assessed the existing management regimes for their suitability for conserving Red Data Book (RDB) species.

Methods: We conducted our study in four districts of Kushima, Kyushu, south-west Japan, with different land-use histories. We compared species richness, plant density and abundance in six grassland types: regularly burnt, regularly mown, paddy levee, roadside, landslip and wetland communities in a total of 289 1 m x 1 m quadrats, recorded in172 grassland patches. Species richness plant density and abundance were analysed with special reference to RDB species under different land use history.

Results: Species richness of grasslands did not differ across different land use histories, yet our analysis showed that the reduced area of grasslands markedly affected the density of RDB species. Grassland types differed in their ability to support RDB species: regularly burnt grasslands were the richest in RDB species and poorest in alien species, followed by regularly mown grasslands, paddy levees, landslip, wetland and roadside communities.

Conclusions: Traditional management regimes, such as regular burning or mowing of grasslands have the best potential for conserving RDB species, and thus should be part of conservation management practices of semi-natural grasslands.     

Patterns of herbaceous plant diversity in southeastern Louisiana pine savannas

Question: How diverse are Louisiana pine savanna plant communities and how is diversity affected by time since burn and removal of a competitively dominant species? Location: Lake Ramsay, southeastern Louisiana, USA. Methods: Species‐area curves were constructed from nine nested quadrats in open savanna differing in time since burn (6, 18 and 30 months). Species frequency was determined for 100 1 ‐m² quadrats. The dominant gras s, Andropogon virginicus, was removed with herbicide from moist and dry sites to test for possible effects of competition. Results: Slopes of log‐log species‐area relationships were steep (0.195 to 0.379). Time since burn did not affect the richness of herbaceous plants, only woody species. More than half of all species recorded (43/79, 54%) were infrequent (in < 10% of quadrats). After two years, there were no differences in species richness and composition for plots with and without A. virginicus. Conclusions: The high species diversity is typical of other savannas across the coastal plain. The large number of infrequent species indicates that the core‐satellite pattern of species occurrence found in temperate grasslands does not apply to southern pine savannas. The absence of effects due to removal of a dominant may be due to insufficient observation time, or low competition. Most species have traits, such as diminutive life forms, that suggest they are weak competitors for light in the presence of robust matrix grasses and in the absence of fire. Many species in Pinuspalustris savannas are likely either fugitive or peripheral species.     

富营养化城市湖泊武汉东湖沉积物微生物群体结构及空间变化研究(英文)北大核心CSCD

【目的】城市湖泊沉积物中的微生物群体是富营养环境生物修复的重要因素。本研究拟对中型富营养化湖泊——武汉东湖沉积物细菌群体结构及空间变化规律进行研究。加深对富营养湖泊微生物群体结构的理解,并为城市湖泊的保护和污染控制提供参考。【方法】采用16S r RNA基因RFLP分析和序列分析技术获得细菌群体系统发育信息。采用PCoA法分析武汉东湖沉积物细菌群体内以及与其它湖泊沉积物细菌群体间的相似性。采用CCA法分析环境因素对细菌群体的影响。【结果】武汉东湖沉积物细菌群体包含13个门和2个未知种群。PCoA分析进一步表明来自东湖3个子湖的细菌群体与其它地域富营养化湖泊的微生物种群结构相似,并区别于重度富营养化子湖庙湖的细菌群体。在庙湖中,我们发现了Thermogymnomonas类古菌的含量显著偏高。CCA分析表明细菌的分布与沉积物中碳、氮和磷元素的含量显著相关。【结论】本研究进一步确证了环境因素对细菌群体组成和分布的调节作用,加深了对富营养水体微生物群体结构的理解,并为城市湖泊的保护和污染控制提供了参考。     

Stand- and plot-level changes in a boreal forest understory community following wildfire

Background: Boreal forest understory plant communities are known to be resilient to fire – the species composition of stands after a fire is quite similar to the pre-fire composition. However, we know little about recovery of individual plants within particular locations in forest stands (i.e. plot-level changes) since we usually do not have pre-fire data for plots.

Aims: We wanted to determine whether species recruited into the same or different locations in a Pinus banksiana stand that experienced a severe wildfire.

Methods: We used pre-existing permanent plots to evaluate the cover of understory after an unplanned wildfire.

Results: Across the entire stand nine of 47 species showed a significant change in cover. The largest change in a plant functional group was in the mosses, with all species present before fire being eliminated. There was no change in species diversity or total cover. At the plot level, species composition showed a much greater change. An average of 47% of the species present in a plot before the fire were absent in the same plot after the fire, and the total species turnover in plots was 88% of the species present before the fire. The plots showed a similar shift in species composition.

Conclusions: These results confirm that boreal forest communities show a high degree of resilience to fire, but within a forest stand species will be found in different locations following fire, potentially exposing them to a different set of biotic and abiotic conditions in these new locations.     

Taxonomic notes on Cheilothela (Lindb.) Broth. and Dicranella (C. Muell.) Schimp.

Abstract

The widespread occurrence of a number of bryophytes on British saltmarshes is reported. The communities in which bryophytes are most frequently found are discussed. These communities are more common on marshes on the west coast of Britain. Differences between moss assemblages on salt marshes in England and Wales and in Scotland are emphasised and the greater range of habitat preference demonstrated by Grimmia maritima in Scotland is commented upon.     

Monitoring plant community change: an application of quadrat classification + discriminant analysis

A procedure for monitoring plant community change was described using data from 189 quadrats (each 0.09 m² in area) from or near 11 Carex exserta meadow sites in the high Sierra Nevada, California, USA. Initially the quadrats were agglomerated into five clusters by the flexible clustering strategy (beta=–0.25) with the standard absolute distance resemblance function. Data for each quadrat were cover percentages for C. exserta, other plants, litter, soil, gravel, and rock. The five clusters appeared to define a cover gradient, from quadrats with mostly gravel and rock to those with mostly C. exserta, and were accordingly designated pioneer, low seral, mid-seral, high seral, and climax.Classification functions (from discriminant analysis) are used with values of the variables to classify individual quadrats on sites used to monitor change. A site is characterized at repeated observations by the proportions of quadrats in each class. Within-class (low seral vs. low seral) rather than between-class (pioneer vs. low seral) tests are made for presence of change. Confidence intervals for differences in proportions of quadrats or individual quadrat probabilities of class membership are computed. If the confidence intervals do not cover zero, values for time one versus time two differ significantly.     

Habitat associations and breeding bird community composition within the city of Bristol,UK

Capsule Different urban breeding bird communities are associated with different habitat types, but, although community species diversity varies significantly, total bird density does not.

Aims To investigate the association between breeding bird communities and habitats within Bristol, UK and how these communities vary in terms of species diversity and total bird abundance.

Methods Breeding density data for 70 species in the metropolitan area of Bristol, UK were subjected to de‐trended correspondence analysis to identify the number of different communities present and their indicator species. These data were then used to identify patterns of habitat association with each community and differences in species richness and total bird density.

Results Three communities were identified: a rural community associated with woodland, managed grassland and inland water; a suburban community associated with buildings and residential gardens; and an intermediate community that shared some of these habitat characteristics. Species richness, but not total bird abundance, was lowest in the suburban community.

Conclusion The diversity of species in urban areas appears to be most dependent upon the availability of patches of natural and semi‐natural habitats. Residential gardens support fewer species, but those species that are present may be found at high densities.     

Sampling communities of ground-foraging ants: Pitfall catches compared with quadrat counts in an Australian tropical savanna

The relative abundances of ant species captured in pitfall traps was compared with those obtained by direct counts in quadrats at a savanna site in Kakadu National Park, Northern Territory. Two measures of abundance in traps were used, one based on total numbers of ants, the other on species frequency of occurrence. All species commonly recorded in quadrats were collected in traps, and their relative abundances were highly correlated on all occasions. Of the 20 most common species in quadrats, five occurred with a significantly different (in all cases lower) frequency in pitfall traps, but these species represented only 1.8–3.1% of total quadrat counts. Results from quadrats and pitfall traps were particularly similar (r > 0.8) when species-were classified into functional groups. Frequency data from traps may sometimes overestimate the abundance of widespread, solitary foraging species (e.g. ‘Chelaner’ and Tetramorium spp.) and underestimate species with large colony sizes (e.g. Iridomyrmex spp.). Data based on total numbers of ants in traps may be more prone to distortion arising from species differences in locomotor behaviour. Species counts in traps could be scaled to reduce these distortions. The finding that pitfall traps gave results comparable with those from quadrat counts provides support for the use of pitfall traps in studies of Australian ant communities in open habitats.