The Selectivity of Carbohydrate Assimilation by the Anaerobic Rumen Ciliate Dasytricha ruminantium

The extent of selectivity in the uptake and metabolism of soluble carbohydrates by the rumen ciliate Dasytricha ruminantium has been examined. The protozoon was not selective in the uptake of available carbohydrates and did not appear to regulate sugar entry by preferential or sequential utilization so that there was a concomitant assimilation of all utilizable soluble-sugars regardless of molecular size or metabolic effects. The presence of readily fermentable substrates did not preclude the uptake and subsequent effects of the toxic monomers mannose and glucosamine hydrochloride. The characteristics of galactose co-utilization differed from those of other monosaccharides examined. Although non-metabolizable substrates did not impede the uptake or metabolism of effective substrates, maximum metabolite production rates were not maintained in the presence of slowly utilized substrates.     

Effects of Altered Carbohydrate Availability on Whole-Plant Assimilation of NO(3)

An experiment was conducted to investigate the relative changes in NO₃⁻ assimilatory processes which occurred in response to decreasing carbohydrate availability. Young tobacco plants (Nicotiana tabacum [L.], cv NC 2326) growing in solution culture were exposed to 1.0 millimolar ¹⁵NO₃⁻ for 6 hour intervals during a normal 12 hour light period and a subsequent period of darkness lasting 42 hours. Uptake of ¹⁵NO₃⁻ decreased to 71 to 83% of the uptake rate in the light during the initial 18 hours of darkness; uptake then decreased sharply over the next 12 hours of darkness to 11 to 17% of the light rate, coincident with depletion of tissue carbohydrate reserves and a marked decline in root respiration. Changes also occurred in endogenous ¹⁵NO₃⁻ assimilation processes, which were distinctly different than those in ¹⁵NO₃⁻ uptake. During the extended dark period, translocation of absorbed ¹⁵N out of the root to the shoot varied rhythmically. The adjustments were independent of ¹⁵NO₃⁻ uptake rate and carbohydrate status, but were reciprocally related to rhythmic adjustments in stomatal resistance and, presumably, water movement through the root system. Whole plant reduction of ¹⁵NO₃⁻ always was limited more than uptake. The assimilation of ¹⁵N into insoluble reduced-N in roots remained a constant proportion of uptake throughout, while assimilation in the shoot declined markedly in the first 18 hours of darkness before stabilizing at a low level. The plants clearly retained a capacity for ¹⁵NO₃⁻ reduction and synthesis of insoluble reduced-¹⁵N even when ¹⁵NO₃⁻ uptake was severely restricted and minimal carbohydrate reserves remained in the tissue.     

Sink Metabolism in Tomato Fruit : III. Analysis of Carbohydrate Assimilation in a Wild Species

Carbohydrate composition and key enzymes involved in carbohydrate metabolism were assayed throughout development of Lycopersicon esculentum and L. chmielewskii fruit. Translocation and assimilation of asymmetric sucrose and total soluble solids content was also determined in both species. The data showed that L. chmielewskii accumulated less starch than L. esculentum, and this was related to a lower level of ADPglucose pyrophosphorylase and a higher level of phosphorylase in L. chmielewskii. L. chmielewskii accumulated sucrose throughout fruit development rather than glucose and fructose which were accumulated by L. esculentum. A low level of invertase and nondetectable levels of sucrose synthase were associated with the high level of sucrose in L. chmielewskii. Translocation and assimilation of asymmetrically labeled sucrose indicated that sucrose accumulated in L. chmielewskii fruit was imported and stored directly in the fruit without intervening metabolism along the translocation path. In contrast, the relatively low level of radioactive sucrose found in L. esculentum fruit appeared to arise from hydrolysis and resynthesis of sucrose. The possible relationship between the level of soluble solids and differences in carbohydrate metabolism in sink tissue of the two species is discussed.     

糖类研究漫谈

糖类结构和功能的研究开始得很早。糖酵解途径是最早阐明的代谢途径之一。人们对糖的功能的认识,一度停滞于能源储存和结构支架的功能。随着糖复合物的细胞信息功能的揭示,形成糖类研究的新高潮。可是,聚糖结构的微不均一性,使人们认识糖类分子的信息功能面临新的障碍。从而激发人们去寻找新的研究思路和实验方案设计,寻求数学的更多介入。从这个意义上讲,糖类研究面临的挑战,对整个生命科学研究的进展都是很有积极意义的。     

The Complex Carbohydrate Structure Database

The Complex Carbohydrate Structure Database (CCSD) and CarbBank, an IBM PC/AT (or compatible) database management system, were created to provide an information system to meet the needs of people interested in carbohydrate science. The CCSD, which presently contains more than 2000 citations, is expected to double in size in the next two years and to include, soon thereafter, all of the published structures of carbohydrates larger than disaccharides.     

The Berg-Purcell Limit Revisited

Biological systems often have to measure extremely low concentrations of chemicals with high precision. When dealing with such small numbers of molecules, the inevitable randomness of physical transport processes and binding reactions will limit the precision with which measurements can be made. An important question is what the lower bound on the noise would be in such measurements. Using the theory of diffusion-influenced reactions, we derive an analytical expression for the precision of concentration estimates that are obtained by monitoring the state of a receptor to which a diffusing ligand can bind. The variance in the estimate consists of two terms, one resulting from the intrinsic binding kinetics and the other from the diffusive arrival of ligand at the receptor. The latter term is identical to the fundamental limit derived by Berg and Purcell (Biophys. J., 1977), but disagrees with a more recent expression by Bialek and Setayeshgar. Comparing the theoretical predictions against results from particle-based simulations confirms the accuracy of the resulting expression and reaffirms the fundamental limit established by Berg and Purcell.     

The Berg-Purcell Limit Revisited

Biological systems often have to measure extremely low concentrations of chemicals with high precision. When dealing with such small numbers of molecules, the inevitable randomness of physical transport processes and binding reactions will limit the precision with which measurements can be made. An important question is what the lower bound on the noise would be in such measurements. Using the theory of diffusion-influenced reactions, we derive an analytical expression for the precision of concentration estimates that are obtained by monitoring the state of a receptor to which a diffusing ligand can bind. The variance in the estimate consists of two terms, one resulting from the intrinsic binding kinetics and the other from the diffusive arrival of ligand at the receptor. The latter term is identical to the fundamental limit derived by Berg and Purcell (Biophys. J., 1977), but disagrees with a more recent expression by Bialek and Setayeshgar. Comparing the theoretical predictions against results from particle-based simulations confirms the accuracy of the resulting expression and reaffirms the fundamental limit established by Berg and Purcell.     

Net CO(2) Assimilation and Carbohydrate Partitioning of Grapevine Leaves in Response to Trunk Girdling and Gibberellic Acid Application

Leaf net CO₂ assimilation rate (A), stomatal conductance (g_s), carboxylation efficiency, and foliar nonstructural carbohydrates were measured on mature, field-grown Vitis vinifera L. (cv Thompson Seedless) vines that had been trunk girdled, sprayed with gibberellic acid, or both, shortly after anthesis. Girdling reduced A, g_s, and carboxylation efficiency when measured 2 weeks after imposition of the treatments. Diurnal measurements indicated that A of girdled vines was less than that of control vines between 1000 and 1800 hours. Gibberellic acid mitigated the depressing effect of girdling on g_s during the same diurnal measurements. The concentrations of foliar carbohydrates were greatest for the girdled vines, followed by the combination treatment and were lowest for the control vines. Foliar carbohydrates were greater for girdled vines 4 weeks after the treatments were imposed, however, by this time there was no significant difference in A between the control and girdled vines. Two and 4 weeks after the experiment was initiated root carbohydrate concentrations were less for the girdled vines when compared to the control vines. The data indicate that the reduction in A of girdled grapevines is not associated with the accumulation of leaf nonstructural carbohydrates following the girdling treatment.     

The Assimilation of Acetate by Chlorella vulgaris

The acetate metabolism of autotrophically grown, acetate-adaptedand acetate-grown cells is compared. All oxidize acetate rapidlyand assimilate about half of the acetate added in short-termexperiments. Kinetic analysis of the incorporation of ¹⁴C-acetatereveals citrate as a primary product of acetate assimilationin all cells in darkness. Malate formed from acetate-I-¹⁴C byacetate-grown cells is asymmetrically labelled in a manner consistentwith a primary incorporation of acetate into malate by a malatesynthase reaction. The chief difference between autotrophic and acetate-grown cellsis the faster rate at which the latter incorporate acetate carboninto compounds outside the tricarboxylic acid cycle. In particular,incorporation into protein and carbohydrate is much faster inacetate-grown cells and it is suggested that enzymes catalysingreactions leading away from the tricarboxylic acid cycle mayincrease in activity in acetate-grown cells. Light greatly stimulates acetate incorporation into lipide andalso increases the synthesis of protein and carbohydrate.     

The Assimilation of Ammonia by Nitrogen-starved Cells of Chlorella vulgaris: Part I. The Correlation of Assimilation with Respiration

The addition of ammonium sulphate to a suspension of nitrogen-starvedChlorella cells is followed immediately by the rapid assimilationof ammonia and a large increase of the respiration rate. Theassimilation of ammonia and the high rate of respiration continueuntil either all the ammonia has been assimilated or some carbonreserve within the cells has been exhausted. Which happens firstdepends on the amount of ammonia added and the quantity of cellspresent. The respiration which accompanies, ammonia assimilationis sensitive to cyanide and it has a respiratory quotient of0•75 compared with 1•2–1•3 for normal reapiration.The addition of glucose to nitrogen-starved cells when ammoniais being assimilated does not increase either the rate of respirationor the rate of assimilation. The rates of reapiration and ammoniaassimilation by normal cells are markedly increased by the additionof glucose. Light has little effect on the rate of ammonia assimilationby nitrogen-starved cells, but doubles the assimilation rateof normal cells.     

The Assimilation of Ammonia by Nitrogen-starved Cells of Chlorella vulgaris: Part II. The Assimilation of Ammonia to other Compounds

Ammonia is rapidly assimilated by nitrogen-starved Chlorellacells and converted into soluble organic nitrogenous compounds.During the first 20 minutes of assimilation most of the ammoniawhich has been used can be accounted for as free or combined-amino-nitrogen and amide-nitrogen. Later a smaller proportionof the assimilated ammonia is found in these fractions whileappreciable quantities of basic amino-acids are formed. Theassimilation of ammonia is accompanied by an increase of therates of oxygen absorption and carbon dioxide production; thevalue of the respiratory quotient decreases. Non-reducing sugarand acid-hydrolysable polysaccharide are metabolized rapidly. Possible interpretations of these facts are discussed.     

Differential Responses of CO2 Assimilation,Carbohydrate Allocation and Gene Expression to NaCl Stress in Perennial Ryegrass with Different Salt Tolerance

Little is known about the effects of NaCl stress on perennial ryegrass (Lolium perenne L.) photosynthesis and carbohydrate flux. The objective of this study was to understand the carbohydrate metabolism and identify the gene expression affected by salinity stress. Seventy-four days old seedlings of two perennial ryegrass accessions (salt-sensitive ‘PI 538976’ and salt-tolerant ‘Overdrive’) were subjected to three levels of salinity stress for 5 days. Turf quality in all tissues (leaves, stems and roots) of both grass accessions negatively and significantly correlated with GFS (Glu+Fru+Suc) content, except for ‘Overdrive’ stems. Relative growth rate (RGR) in leaves negatively and significantly correlated with GFS content in ‘Overdrive’ (P<0.01) and ‘PI 538976’ (P<0.05) under salt stress. ‘Overdrive’ had higher CO₂ assimilation and F_v/F_m than ‘PI 538976’. Intercellular CO₂ concentration, however, was higher in ‘PI 538976’ treated with 400 mM NaCl relative to that with 200 mM NaCl. GFS content negatively and significantly correlated with RGR in ‘Overdrive’ and ‘PI 538976’ leaves and in ‘PI 538976’ stems and roots under salt stress. In leaves, carbohydrate allocation negatively and significantly correlated with RGR (r² = 0.83, P<0.01) and turf quality (r² = 0.88, P<0.01) in salt-tolerant ‘Overdrive’, however, the opposite trend for salt-sensitive ‘PI 538976’ (r² = 0.71, P<0.05 for RGR; r² = 0.62, P>0.05 for turf quality). A greater up-regulation in the expression of SPS, SS, SI, 6-SFT gene was observed in ‘Overdrive’ than ‘PI 538976’. A higher level of SPS and SS expression in leaves was found in ‘PI 538976’ relative to ‘Overdrive’. Accumulation of hexoses in roots, stems and leaves can induce a feedback repression to photosynthesis in salt-stressed perennial ryegrass and the salt tolerance may be changed with the carbohydrate allocation in leaves and stems.     

Assimilation of hydrocarbons

When cultivating different yeast genera on the mixture of C₁₁−C₂₃ n-alkanes with predominant C₁₆ and C₁₇ content C₁₆ and C₁₇ fatty acids predominated in the synthetized cell fat. Besides these C_11∶0, C_15∶0 and C_18∶1 fatty acids were also present in higher quantities in all strains tested. This conclusion is in agreement with results of the residualn-alkanes estimation where during the fermentation most of the C₁₆ and C₁₇ hydrocarbons decreased from the original hydrocarbon mixture. From these experiments it can be provisionally concluded that the qualitative composition of the cell fat is not dependent on the yeast strain investigated, the amount of fat on the dry weight basis depends on the strain.