The hyporheic zone as a source of dissolved organic carbon and carbon gases to a temperate forested stream

The objective of this study was to examine chemical changes in porewaters that occur over small scales (cm) as groundwater flows through the hyporheic zone and discharges to a stream in a temperate forest of northern Wisconsin. Hyporheic-zone porewaters were sampled at discrete depths of 2, 10, 15, 61, and 183 cm at three study sites in the study basin. Chemical profiles of dissolved organic carbon (DOC), CO₂, CH₄, and pH show dramatic changes between 61 cm sediment depth and the water-sediment interface. Unless discrete samples at small depth intervals are taken, these chemical profiles are not accounted for. Similar trends were observed at the three study locations, despite each site having very different hydraulic-flow regimes. Increases in DOC concentration by an order of magnitude from 61 to 15 cm depth with a corresponding decrease in pH and rapid decreases in the molecular weight of the DOC suggest that aliphatic compounds (likely organic acids) are being generated in the hyporheic zone. Estimated efflux rates of DOC, CO₂, and CH₄ to the stream are 6.2, 0.79, 0.13 moles m² d^-1, respectively, with the vast majority of these materials produced in the hyporheic zone. Very little of these materials are accounted for by sampling stream water, suggesting rapid uptake and/or volatilization.     

Exoenzyme activities as indicators of dissolved organic matter composition in the hyporheic zone of a floodplain river

1. We measured the hyporheic microbial exoenzyme activities in a floodplain river to determine whether dissolved organic matter (DOM) bioavailability varied with overlying riparian vegetation patch structure or position along flowpaths. 2. Particulate organic matter (POM), dissolved organic carbon (DOC), dissolved oxygen (DO), electrical conductivity and temperature were sampled from wells in a riparian terrace on the Queets River, Washington, U.S.A. on 25 March, 15 May, 20 July and 09 October 1999. Dissolved nitrate, ammonium and soluble reactive phosphorus were also collected on 20 July and 09 October 1999. Wells were characterised by their associated overlying vegetation: bare cobble/young alder, mid‐aged alder (8–20 years) and old alder/old‐growth conifer (25 to >100 years). POM was analysed for the ash‐free dry mass and the activities of eight exoenzymes (α‐glucosidase, β‐glucosidase, β ‐N‐acetylglucosaminidase, xylosidase, phosphatase, leucine aminopeptidase, esterase and endopeptidase) using fluorogenic substrates. 3. Exoenzyme activities in the Queets River hyporheic zone indicated the presence of an active microbial community metabolising a diverse array of organic molecules. Individual exoenzyme activity (mean ± standard error) ranged from 0.507 ± 0.1547 to 22.8 ± 5.69 μmol MUF (g AFDM)^?1 h^?1, was highly variable among wells and varied seasonally, with the lowest rates occurring in March. Exoenzyme activities were weakly correlated with DO, DOC and inorganic nutrient concentrations. 4. Ratios of leucine aminopeptidase : β‐glucosidase were low in March, May and October and high in July, potentially indicating a switch from polysaccharides to proteins as the dominant component of microbial metabolism. 5. Principal components analysis indicated that there were patch effects and that these effects were strongest in the summer. 6. DOM degradation patterns did not change systematically along hyporheic flowpaths but varied with overlying forest patch type in the Queets River hyporheic zone, suggesting that additional carbon inputs exist. We hypothesise that the most likely input is the downward movement of DOM from overlying riparian soils. Understanding this movement of DOM from soils to subsurface water is essential for understanding both the hyporheic metabolism and the carbon budget of streams and rivers.     

Dissolved organic carbon in streams and groundwater

Minipiezometers installed at different vertical levels within the streambed (20–140 cm) were used to study temporal and spatial variation in the dissolved organic carbon (DOC) content of streamwater and groundwater in three southern Ontario streams. Groundwater, as represented by our streambed samples, contained considerable quantities of DOC but variation between replicate samples was high. Diel fluctuations in DOC content of streamwater were consistent with daytime autochthonous production and night-time uptake by heterotrophs. Water from the streambed neither consistently diluted nor enhanced streamwater levels of DOC. At some stations, DOC variation with depth, including streamwater, seemed to be largely random. At other stations, DOC concentrations from the deepest piezometers were consistently higher than concentrations at intermediate depths, suggesting a loss of DOC from deeper waters to overlying sediments. However, at these stations DOC concentrations were highest at 20 cm and at the surface. Interflow delivery of DOC to the shallow layers of the streambed may be a significant source of carbon for a stream ecosystem, especially in agricultural areas. Late summer diel fluctuations at one station may be related to changing patterns of intermixing of stream and groundwater in the upper layers of the streambed as governed by velocity heads, convective currents and evapotranspiration.     

Microbial respiration within a floodplain aquifer of a large gravel-bed river

1. Aerobic respiration, productivity and the carbon turnover rate of microbial biofilms were determined at hyporheic and phreatic sites in the Kalispell Valley alluvial aquifer along a transect extending 3.9 km laterally from the main channel of the Flathead River, a sixth order river in Montana (U.S.A.). The effect of experimentally increasing bioavailable organic carbon (acetate) on the respiration rate of biofilms in this carbon‐poor [dissolved organic carbon (DOC) < 2 mg L^?1] aquifer was also measured. 2. Chambers containing natural substratum were placed in‐situ and allowed to colonise for 20 weeks. After 4, 12 and 20 weeks, they were taken to the laboratory where oxygen flux was measured in a computer‐controlled, flow‐through respirometry system. 3. Respiration ranged from 0.01 to 0.33 mg O₂ dm^?3 h^?1 across sites, with means ranging from 0.10 to 0.17 mg O₂ dm^?3 h^?1. Productivity estimates ranged from 0.18 to 0.32 mg C dm^?3 day^?1 (mean 0.25, SE 0.03). The total organic carbon (TOC) of the microbial biofilms ranged from 18.2 to 29.7 mg C dm^?3. Turnover rate ranged from 3.2 to 5.6 year^?1 with a mean of 4.2 year^?1. 4. At the hyporheic site very close to the river, respiration did not significantly increase when samples were supplemented with labile carbon. Respiration increased with increasing DOC addition at hyporheic sites more distant from the river, suggesting a carbon‐limitation gradient within the hyporheic zone. Microbes at the phreatic site did not respond to increasing DOC addition, suggesting that the phreatic biofilm is adapted to low carbon availability. 5. Comparing the volume of the alluvial aquifer (about 0.7 km³) to that of the river benthic sediments (to 0.25 m depth, which amounts to about 1.6 × 10^?4 km³) within the Flathead Valley, leads to the conclusion that interstitial microbial productivity is orders of magnitude greater than benthic productivity. Alluvial aquifers are often voluminous and microbial production is an enormous component of ecosystem production in rivers such as the Flathead.     

Vertical change in dissolved organic carbon and oxygen at the water table region of an aquifer recharged with stormwater: biological uptake or mixing?

Decreases in dissolved organic carbon (DOC) and dissolved oxygen (DO) with increasing depth below the groundwater table are often considered as evidence for aerobic respiration; however, they may reflect mixing of infiltrating water and groundwater. We found that groundwater DOC concentration was on average 0.3 mg C l^?1 higher and DO concentration 1.5 mg O₂ l^?1 lower at recharge sites replenished with stormwater than at reference sites fed by direct infiltration of rain water from the land surface. Groundwater DOC increased and DO decreased with increasing vadose zone thickness (VZT) at both recharge and reference sites. There was no significant interaction between the effects of stormwater infiltration and VZT. Vertical changes in DOC and DO below the groundwater table at recharge sites could account for by simple mixing of infiltrating stormwater and groundwater. Moreover, aquifer sediment respiration (SR) was not significantly higher at recharge sites than at reference sites. However, slow filtration column experiments showed that SR increased significantly with an increasing supply of easily biodegradable DOC. We conclude that the observed reduction in DOC below the groundwater table at recharge sites was essentially due to water mixing rather than biological uptake because of the low biodegradability of the DOC and the short transit time of stormwater in the upper layers of groundwater. Our results highlight the need to distinguish between the effect of hydrological and biological processes on DOC and DO patterns below the groundwater before conclusions are made on the efficiency of groundwater in degrading surface-derived DOC.     

Organic matter chemistry and dynamics in clear-cut and unmanaged hardwood forest ecosystems

Forest harvesting alters the organic matter cycle by changing litter inputs and the decomposition regime. We hypothesized that these changes would result in differences in organic matter chemistry between clear-cut and uncut watershed ecosystems. We studied the chemistry of soil organic matter (SOM), and dissolved organic carbon (DOC) in soil solutions and stream samples in clear-cut and uncut sites at the Hubbard Brook Experimental Forest in New Hampshire using DOC fractionation techniques and solid-state ¹³C nuclear magnetic resonance (NMR) spectroscopy.Alkyl-C (aliphatic compounds) and O-alkyl-C (carbohydrates) were the largest C fractions in soil and dissolved organic matter at Hubbard Brook. Alkyl-C ranged from 29–48% of soil C, 25–42% of soil solution C, and 22–42% of streamwater DOC. Carbohydrates comprised 32–49%, 36–43%, and 29–60% of C in soils, solutions, and streamwater, respectively. In both soils and soil solutions, the carbohydrate fraction decreased with increasing soil depth, while the aromaticity of organic matter increased with depth. There were no significant differences in the structural chemistry of SOM between clear-cut and uncut watersheds.The aromatic-C fractions in soil solutions at the clear-cut site ranged from 12–16%, approximately 40% greater than at the uncut site (8.5–11%). Thus, clear-cutting has resulted in the leaching of more highly decomposed organic matter, and depletion of more aliphatic compounds in the soluble organic pool. Because DOC fluxes are small compared to the SOM pool, large differences in soil solution chemistry do not substantially alter the overall composition of SOM. While the organic chemistry of stream DOC varied greatly among 3 sampling dates, there were no obvious clear-cutting effects. Thus, temporal variations in flowpaths and/or in-stream processes appear to be more important than disturbance in regulating the organic carbon chemistry of these streams.     

溪流潜流层大型无脊椎动物生态学研究进展

溪流潜流层是溪流表层水和地下水相互作用的群落交错区,生物多样性丰富,是溪流生态系统的重要组成部分.大型无脊椎动物位于潜流层食物网的顶层,直接影响着潜流层物质和能量动态,是河流健康潜在的指示生物,调节着潜流层的环境净化和生态缓冲功能,对溪流生态系统发挥着至关重要的作用.潜流层大型无脊椎动物类群按生活史划分为偶入动物、非典型潜流层动物和典型潜流层动物.潜流层孔隙大小、孔隙水流速、溶解氧、温度、可利用的食物源、渗透系数和水力停留时间是影响大型无脊椎动物在潜流层分布的主要因素.对于潜流层这样一个特殊的生态界面,针对不同的研究目的应该选择合适的取样和调查方法.潜流层大型无脊椎动物的生活史和生活史对策,在溪流生态系统物质循环和能量流动中作用的定量化分析,基于潜流层大型无脊椎动物的河流健康评价体系,以及潜流层作为“庇护地”对于大型无脊椎动物分布和进化的生态学意义,都值得进一步关注和深入研究.     

Simultaneous removal of chlorpyrifos and dissolved organic carbon using horizontal sub-surface flow pilot wetlands

Rural areas of developing countries require low-cost treatment systems to purify wastewater which is contaminated with pesticides and organic matter. This work evaluated for six months the simultaneous removal of chlorpyrifos and dissolved organic matter in water using four horizontal sub-surface flow constructed wetlands (SSFCW) at a pilot scale, that were planted with Phragmites australis at 20 ± 2 °C water temperature. In each wetland, three concentrations of chlorpyrifos and three of dissolved organic carbon (DOC) were tested by liquid chromatography and an organic carbon analyzer respectively. The pesticide and DOC were added to the wetlands in synthetic wastewater. For the experiments, four wetlands of equal dimensions were used, with granular material of igneous rocks, 3.9–6.4 mm in diameter and at a depth of 0.3 m with a layer of water 0.2 m deep. For each treatment, regular sampling was carried out for the influent and effluents. As a supporting feature NH₄⁺, NO₃^? and PO₄^3? were quantified and in situ measurements of dissolved oxygen (DO), pH, electrical conductivity, water temperature and redox potential were taken. The overall removal of the chlorpyrifos (92.6%) and DOC (93.2%) was high, as was DOC removal as a function of pesticide concentration in the influent. The minimum magnitude (92.0%) was reached with 425.6 μg L^?1 of chlorpyrifos and, with the highest pesticide removal (96.8%). At lower concentrations of the agrochemical, DOC removal increased. The removals were possibly due to mineralization processes, biological decomposition and sorption in plants. These findings demonstrate that SSFCW are capable of simultaneously removing dissolved organic matter and organophosphate pesticides such as chlorpyrifos, which indicate that chlorpyrifos did not interfere with the removal of organic material.     

Consequences of a biogeomorphic regime shift for the hyporheic zone of a Sonoran Desert stream

1. Feedbacks between vegetation and geomorphic processes can generate alternative stable states and other nonlinear behaviours in ecological systems, but the consequences of these biogeomorphic interactions for other ecosystem processes are poorly understood. In this study, we describe the changes in the hydrological, geomorphic and biogeochemical characteristics of the hyporheic zone of a Sonoran desert stream (Sycamore Creek, Arizona, U.S.A.) in response to a transition from an unvegetated gravel‐bed state to densely vegetated wetlands (ciénegas). 2. A survey of the entire length of Sycamore Creek indicated that ciénegas occupied c. 18% of the stream, and were disproportionately represented in constrained canyons rather than wide, unconstrained valleys. 3. Vegetated patches were characterized by low concentrations of dissolved oxygen (DO) and nitrate and high concentrations of carbon dioxide and methane in the hyporheic zone. In contrast to unvegetated areas, hyporheic DO in ciénegas exhibited no relationship with vertical hydraulic gradients. 4. Increases in hyporheic DO following removal of vegetation by floods supports the hypothesis that these reduced conditions were the result of biogeochemical and geomorphic changes associated with vegetation establishment. In locations where vegetation persisted, hyporheic DO exhibited no response to flooding; in sections where vegetation was removed hyporheic DO closely tracked post‐flood increases in surface stream DO. 5. Shallow sediments in vegetated patches were finer and more organic‐rich than in unvegetated patches, due to increased deposition during floods. Conservative tracer additions indicated that hydrological exchange between the surface stream and hyporheic zone was much lower in ciénegas than in gravel‐bed reaches. 6. Vegetation establishment in desert streams not only alters the physical and chemical characteristics of the hyporheic zone, but also the nature of interactions between surface and hyporheic subsystems.     

Oxygen supply and the adaptations of animals in groundwater

1. The first part of this review focuses on the oxygen status of natural groundwater systems (mainly porous aquifers) and hyporheic zones of streams. The second part examines the sensitivity of groundwater organisms, especially crustaceans, to low oxygen concentrations (< 3.0 mg L^?1 O₂). 2. Dissolved oxygen (DO) in groundwater is spatially heterogeneous at macro- (km), meso- (m) and micro- (cm) scales. This heterogeneity, an essential feature of the groundwater environment, reflects changes in sediment composition and structure, groundwater flow velocity, organic matter content, and the abundance and activity of micro-organisms. Dissolved oxygen also exhibits strong temporal changes in the hyporheic zone of streams as well as in the recharge area of aquifers, but these fluctuations should be strongly attenuated with increasing distance from the stream and the recharge zone. 3. Dissolved oxygen gradients along flow paths in groundwater systems and hyporheic zones vary over several orders of magnitude (e.g. declines of 9 × 10^?5 to 1.5 ×10^?2 mg L^?1 O₂ m^?1 in confined aquifers and 2 × 10^?2 to 1 mg L^?1 O₂ m^?1 in parafluvial water). Several factors explain this strong variation. Where the water table is close to the surface, oxygen is likely to be consumed rapidly in the first few metres below the water table because of incomplete degradation of soil-generated labile dissolved organic carbon (DOC) in the vadose zone. Where the water table is far from the surface, strong oxygen depletion in the vicinity of the water table does not occur, DO being then gradually consumed as groundwater flows down the hydraulic gradient. In unconfined groundwater systems, oxygen consumption along flow paths may be compensated by down-gradient replenishment of DO, resulting either from the ingress of atmospheric oxygen or water recharge through the vadose zone. In confined groundwater systems, where replenishment of oxygen is impossible, the removal time of DO varies from a few years to more than 10 000 years, depending mainly on the organic carbon content of the sediment. Comparison of the hyporheic zones between systems also revealed strong differences in the removal time and length of underground pathways for DO. This strong variability among systems seems related to differences in contact time of water with sediment. 4. Although groundwater macro-crustaceans are much more resistant to hypoxia than epigean species, they cannot survive severe hypoxia (DO < 0.01 mg L^?1 O₂) for very long (lethal time for 50% of the population ranged from 46.7 to 61.7 h). In severe hypoxia, none of the hypogean crustaceans examined utilized a high-ATP yielding metabolic pathway. High survival times are mainly a result of the combination of three mechanisms: a high storage of fermentable fuels (glycogen and phosphagen), a low metabolic rate in normoxia, and a further reduction in metabolic rate by reducing locomotion and ventilation. It is suggested here that the low metabolic rate of many hypogean species may be an adaptation to low oxygen and not necessarily result from an impoverished food supply. 5. An interesting physiological feature of hypogean crustaceans is their ability to recover from anaerobic stress and, more specifically, rapidly to resynthesize glycogen stores during post-hypoxic recovery. A high storage and rapid restoration of fermentable fuels (without feeding) allows groundwater crustaceans to exploit a moving mosaic of suboxic (< 0.3 mg L?1 O₂), dysoxic (0.3–3.0 mg L^?1 O₂) and oxic (> 3 mg L^?1 O₂) patches. 6. It is concluded that although hypogean animals are probably unsuited for life in extensively or permanently suboxic groundwater, they can be found in small or temporarily suboxic patches. Indeed, their adaptations to hypoxia are clearly suited for life in groundwater characterized by spatially heterogeneous or highly dynamic DO concentrations. Their capacity to survive severe hypoxia for a few days and to recover rapidly would explain partly why ecological field studies often reveal the occurrence of interstitial taxa in groundwater with a wide range of DO.     

The role of water exchange between a stream channel and its hyporheic zone in nitrogen cycling at the terrestrial-aquatic interface

The subsurface riparian zone was examined as an ecotone with two interfaces. Inland is a terrestrial boundary, where transport of water and dissolved solutes is toward the channel and controlled by watershed hydrology. Streamside is an aquatic boundary, where exchange of surface water and dissolved solutes is bi-directional and flux is strongly influenced by channel hydraulics. Streamside, bi-directional exchange of water was qualitatively defined using biologically conservative tracers in a third order stream. In several experiments, penetration of surface water extended 18 m inland. Travel time of water from the channel to bankside sediments was highly variable. Subsurface chemical gradients were indirectly related to the travel time. Sites with long travel times tended to be low in nitrate and DO (dissolved oxygen) but high in ammonium and DOC (dissolved organic carbon). Sites with short travel times tended to be high in nitrate and DO but low in ammonium and DOC. Ammonium concentration of interstitial water also was influenced by sorption-desorption processes that involved clay minerals in hyporheic sediments. Denitrification potential in subsurface sediments increased with distance from the channel, and was limited by nitrate at inland sites and by DO in the channel sediments. Conversely, nitrification potential decreased with distance from the channel, and was limited by DO at inland sites and by ammonium at channel locations. Advection of water and dissolved oxygen away from the channel resulted in an oxidized subsurface habitat equivalent to that previously defined as the hyporheic zone. The hyporheic zone is viewed as stream habitat because of its high proportion of surface water and the occurrence of channel organisms. Beyond the channel's hydrologic exchange zone, interstitial water is often chemically reduced. Interstitial water that has not previously entered the channel, groundwater, is viewed as a terrestrial component of the riparian ecotone. Thus, surface water habitats may extend under riparian vegetation, and terrestrial groundwater habitats may be found beneath the stream channel.     

Seasonal weather effects on hydrology drive the metabolism of non-forest lowland streams

Weather variations change stream hydrological conditions, affecting the stream function. A seasonal study in three well-conserved first-order Pampean streams was carried out to test the hypothesis that rainfalls are the main drivers of whole-stream metabolism, through their effects on hydrology. We estimated the stream metabolism and metabolic contribution of six relevant communities (angiosperms, macroalgae, seston, epiphyton, epipelon, and hyporheos) during late spring, summer, and winter and examined the relation between gross primary production (GPP) and photosynthetic active radiation (PAR). Our results showed that the decrease in available streambed light due to the dissolved organic carbon after rainfalls was the main factor related to the decrease in the ecosystem and community metabolisms. For instance, GPP oscillated from ~10 gO₂ m^?2 d^?1 in early spring (low flows) to ~3 gO₂ m^?2 d^?1 in summer (high flows). Ecosystem respiration (ER) was less sensitive than GPP to rainfalls due to the increase of hyporheic respiration. Rainfalls also caused a significant loss of downstream macroalgal biomass. At a day scale, the high PAR of late spring and summer saturated GPP during the afternoon, and the low temperature of winter mornings constrained GPP. Hence, the knowledge of weather changes is key to understanding the main hydrological drivers of stream function.     

Sources and ages of dissolved organic matter in peatland streams: evidence from chemistry mixture modelling and radiocarbon data

Monitoring data over the period 1994–2007 were analysed for three streams (Cottage Hill Sike, CHS; Rough Sike, RS; Trout Beck, TB) draining blanket peat underlain by glacial clay and limestone-rich sub-strata at Moor House (Northern England). Dissolved organic carbon concentration, [DOC], showed complex relationships with both discharge and calcium concentration, [Ca]. A model based on [Ca] was constructed to simulate stream [DOC] by mixing dissolved organic matter (DOM) from shallow peat, quantified by measured [DOC] (15–30 mg l^?1) in peat porewater, with DOM assumed to be present at a constant concentration (c. 5 mg l^?1) in groundwater. A temperature-based adjustment to the measured porewater [DOC] was required to account for relatively low streamwater [DOC] during winter and spring. The fitted model reproduced short-term variation in streamwater [DOC] satisfactorily, in particular variability in RS and TB due to groundwater contributions. Streamwater DOM is largely derived from surface peat, which accounts for more than 96% of the total DOC flux in both RS and TB, and 100% in CHS. Model outputs were combined with streamwater and porewater DO¹⁴C data to estimate the ¹⁴C contents, and thereby the ages, of DOM from peat and groundwater. The peat-derived DOM is 5 years old on average, with most of it very recently formed. The derived age of groundwater DOM (8,500 years) is comparable to the 4,000–7,000 years estimated from the DO¹⁴C of water extracts of clay underlying the peat, suggesting that the clay is the source of groundwater DOM.     

Perspectives and predictions on the microbial ecology of the hyporheic zone

1. Studies of hyporheic microbial ecology have suggested an important role for hyporheic microbial processes in stream ecosystem functioning. Using evidence from microbial communities in other aquatic habitats, some predictions are made concerning the diversity of microbial types and microbial processes likely to occur in the hyporheic zone, and the relative importance of these various types to the hyporheic ecosystem. 2. It is predicted that the biofilm growth form of interstitial micro-organisms will create a variety of microniches, allowing coexistence of a great diversity of microbial types, and promoting the activity of some otherwise poor competitors. It is further predicted that the confluence of reduced groundwaters and aerobic surface waters will favour chemolithotrophic processes in the hyporheic zone, but that these will contribute significantly to hyporheic production only if surface water is very low in dissolved organic carbon, or the groundwater is extremely reduced, such as by the influence of riparian wetlands. A variety of anaerobic respiratory pathways, such as nitrate, ferric ion, sulphate and even methanogenic respiration will be employed in the hyporheic zone, with biofilm dynamics permitting these to occur even in aerobic sediments. Anaerobic pathways may account for a significant proportion of total hyporheic organic matter mineralization. 3. The role of fungi in hyporheic dynamics is, as yet, almost completely unstudied. However, it is expected that they will be important in breaking down buried particulate organic matter (POM), which may account for a large proportion of total stream POM. 4. Physicochemical conditions in hyporheic sediments appear to be highly heterogeneous, and this heterogeneity may be very important in the cycling of certain nutrients, especially nitrogen, which involves a series of steps requiring different conditions. 5. Various new techniques are now available by which biofilm dynamics and in situ microbial processes may be measured. Studies are recommended of intact microbial communities both at the microscale of the biofilm and at the scale of the heterogeneities occurring in hyporheic sediments. Studies are needed that measure actual rates of microbial processes under in situ conditions.     

Salmon‐derived nutrient and organic matter fluxes from a coastal catchment in southeast Alaska

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Controls on fluxes and export of dissolved organic carbon in grasslands with contrasting soil types

Export of dissolved organic carbon (DOC) from grassland ecosystems can be an important C flux which directly affects ecosystem C balance since DOC is leached from the soil to the groundwater. DOC fluxes and their controlling factors were investigated on two grassland sites with similar climatic conditions but different soil types (Vertisol vs. Arenosol) for a 2.5-year period. Parts of both grasslands were disturbed by deep ploughing during afforestation. Contrary to what was expected, ploughing did not increase DOC export but surface soil DOC concentrations decreased by 28% (Vertisol) and 14% (Arenosol). DOC flux from the soil profile was negatively influences by the clay content of the soil with seven times larger DOC export in the clay-poor Arenosol (55 kg C ha^?1 a^?1) than in the clay-rich Vertisol (8 kg C ha^?1 a^?1). At the Arenosol site, highest DOC concentrations were measured in late summer, whereas in the Vertisol there was a time lag of several months between surface and subsoil DOC with highest subsoil DOC concentrations during winter season. DOC export was not correlated with soil organic carbon stocks. Large differences in ¹⁴C concentrations of 22–40 pMC between soil organic carbon and DOC in the subsoil indicated that both C pools are largely decoupled. We conclude that DOC export at both sites is not controlled by the vegetation but by physicochemical parameters such as the adsorption capacity of soil minerals and the water balance of the ecosystem. Only in the acidic sandy Arenosol DOC export was a significant C flux of about 8% of net ecosystem production.     

Early stages of leaf decomposition are mediated by aquatic fungi in the hyporheic zone of woodland streams

1. Leaf litter constitutes the major source of organic matter and energy in woodland stream ecosystems. A substantial part of leaf litter entering running waters may be buried in the streambed as a consequence of flooding and sediment movement. While decomposition of leaf litter in surface waters is relatively well understood, its fate when incorporated into river sediments, as well as the involvement of invertebrate and fungal decomposers in such conditions, remain poorly documented. 2. We tested experimentally the hypotheses that the small interstices of the sediment restrict the access of the largest shredders to buried organic matter without compromising that of aquatic hyphomycetes and that fungal decomposers in the hyporheic zone, at least partly, compensate for the role of invertebrate detritivores in the benthic zone. 3. Alder leaves were introduced in a stream either buried in the sediment (hyporheic), buried after 2 weeks of exposure at the sediment surface (benthic‐hyporheic), or exposed at the sediment surface for the entire experiment (benthic). Leaf decomposition was markedly faster on the streambed surface than in the two other treatments (2.1‐ and 2.8‐fold faster than in the benthic‐hyporheic and hyporheic treatments, respectively). 4. Fungal assemblages were generally less diverse in the hyporheic habitat with a few species tending to be relatively favoured by such conditions. Both fungal biomass and sporulation rates were reduced in the hyporheic treatment, with the leaves subject to the benthic‐hyporheic treatment exhibiting an intermediate pattern. The initial 2‐week stage in the benthic habitat shaped the fungal assemblages, even for leaves later subjected to the hyporheic conditions. 5. The abundance and biomass of shredders drastically decreased with burial, except for Leuctra spp., which increased and was by far the most common leaf‐associated taxon in the hyporheic zone. Leuctra spp. was one of the rare shredder taxa displaying morphological characteristics that increased performance within the limited space of sediment interstices. 6. The carbon budgets indicated that the relative contributions of the two main decomposers, shredders and fungi, varied considerably depending on the location within the streambed. While the shredder biomass represented almost 50% of the initial carbon transformed after 80 days in the benthic treatment, its contribution was <0.3% in the hyporheic one and 2.0% in the combined benthic‐hyporheic treatment. In contrast, mycelial and conidial production in the permanently hyporheic environment accounted for 12% of leaf mass loss, i.e. 2–3 times more than in the two other conditions. These results suggest that the role of fungi is particularly important in the hyporheic zone. 7. Our findings indicate that burial within the substratum reduces the litter breakdown rate by limiting the access of both invertebrate and fungal decomposers to leaves. As a consequence, the hyporheic zone may be an important region of organic matter storage in woodland streams and serve as a fungal inoculum reservoir contributing to further dispersal. Through the temporary retention of litter by burial, the hyporheic zone must play a significant role in the carbon metabolism and overall functioning of headwater stream ecosystems.     

The ecological significance of exchange processes between rivers and groundwater

1. This review focuses on the connectivity between river and groundwater ecosystems, viewing them as linked components of a hydrological continuum. Ecological processes that maintain the integrity of both systems and those that are mediated by their ecotones are evaluated. 2. The hyporheic zone, as the connecting ecotone, shows diverse gradients. Thus it can be characterized by hydrological, chemical, zoological and metabolic criteria. However, the characteristics of the hyporheic zone tend to vary widely in space and time as well as from system to system. The exact limits are difficult to designate and the construction of static concepts is inadequate for the representation of ecological processes. The hyporheic interstices are functionally a part of both the fluvial and groundwater ecosystems. 3. The permeability of the ecotone depends on the hydraulic conductivity of the sediment layers which, because of their heterogeneity, form many flowpath connections between the stream and the catchment, from the small scale of a single microhabitat to the large scale of an entire alluvial aquifer. Local up- and downwellings are determined by geomorphologic features such as streambed topography, whereas large-scale exchange processes are determined mainly by the geological properties of the catchment. Colmation—clogging of the top layer of the channel sediments—includes all processes leading to a reduction of pore volume, consolidation of the sediment matrix, and decreased permeability of the stream bed. Consequently, colmation can hinder exchange processes between surface water and groundwater. 4. Physicochemical gradients in the interstices result from several processes: (i) hyporheic flow pattern and the different properties of surface and groundwaters; (ii) retention, caused by the filtering effect of pore size and lithologic sorption as well as the transient storage of solutes caused by diminished water velocities; (iii) biogeochemical transformations in conjunction with local residence time. Each physicochemical parameter may develop its own vertical dynamics laterally from the active channel into the banks as well as longitudinally because of geomorphologic changes. 5. The river–groundwater interface can act as a source or sink for dissolved organic matter, depending on the volume and direction of flow, dissolved organic carbon concentrations and biotic activity. Interstitial storage of particulate organic matter is influenced mainly by grain size distribution and by spates involving bedload movement that may import or release matter, depending on the season. After initial transient and abiotic storage, hyporheic organic matter is mobilized and transformed by the biota. Micro-organisms account for over 90% of the community respiration. In subterranean waters most bacteria are attached to surfaces and remain in a biofilm. 6. Hyporheic interstices are functionally significant for phreatic and riverine metazoans because they act as a refuge against adverse conditions. The net flow direction exerts a dominant influence on interstitial colonization, but many other factors also seem to be important in structuring the hyporheos. 7. The hyporheic corridor concept emphasizes connectivity and interactions between subterranean and surface flow on an ecosystem level for floodplain rivers. It is a complementary concept to others which focus on surficial processes in the lateral and longitudinal dimensions. 8. The ecological integrity of groundwater and fluvial systems is often threatened by human activities: (i) by reducing connectivity; (ii) by altering exchange processes; and (iii) by toxic or organic contamination.     

Bacterial consumption of total and dissolved organic carbon in the Great Barrier Reef

Heterotrophic bacteria typically take up directly dissolved organic matter due to the small molecular size, although both particulate and dissolved organic matter have labile (easily consumed) compounds. Tropical coastal waters are important ecosystems because of their high productivity. However, few studies have determined bacterial cycling (i.e. carbon uptake by bacteria and allocation for bacterial biomass and respiration) of dissolved organic carbon in coastal tropical waters, and none has determined bacterial cycling of total and dissolved organic carbon simultaneously. In this study we followed bacterial biomass and production, and organic carbon changes over short-term (12 days) dark incubations with (total organic carbon, TOC) and without particulate organic carbon additions (dissolved organic carbon, DOC). The study was performed at three sites along the middle stretch of the Great Barrier Reef (GBR) during the dry and wet seasons. Our results show that the bacterial growth efficiency is low (0.1–11.5%) compared to other coastal tropical systems, and there were no differences in the carbon cycling between organic matter sources, seasons or locations. Nonetheless, more carbon was consumed in the TOC compared to the DOC incubations, although the proportion allocated to biomass and respiration was similar. This suggests that having more bioavailable substrate in the particulate form did not benefit bacteria. Overall, our study indicates that when comparing the obtained respiration rates with previously measured primary production rates, the GBR is a heterotrophic system. More detailed studies are required to fully explore the mechanisms used by bacteria to cycle TOC and DOC in tropical coastal waters.

     

Seasonal Variations of Dissolved Nitrogen and DOC:DON Ratios in an Intermittent Mediterranean Stream

Seasonal variations of dissolved inorganic nitrogen (DIN) (NO₃–N and NH₄–N) and dissolved organic nitrogen (DON) were determined in Fuirosos, an intermittent stream draining an unpolluted Mediterranean forested catchment (10.5 km²) in Catalonia (Spain). The influence of flow on streamwater concentrations and seasonal differences in quality and origin of dissolved organic matter, inferred from dissolved organic carbon to nitrogen ratios (DOC:DON ratios), were examined. During baseflow conditions, nitrate and ammonium had opposite behaviour, probably controlled by biological processes such as vegetation uptake and mineralization activity. DON concentrations did not have a seasonal trend. During storms, nitrate and DON increased by several times but discharge was not a good predictor of nutrient concentrations. DOC:DON ratios in streamwater were around 26, except during the months following drought when DOC:DON ratios ranged between 42 and 20 during baseflow and stormflow conditions, respectively. Annual N export during 2000–2001 was 70 kg km⁻¹ year⁻¹, of which 75% was delivered during stormflow. The relative contribution of nitrogen forms to the total annual export was 57, 35 and 8% as NO₃–N, DON and NH₄–N, respectively.