基于高通量转录组测序的草鱼雌雄性腺差异表达基因分析

草鱼雌性个体生长优势明显高于雄性,挖掘精巢和卵巢差异表达的功能基因对草鱼生殖调控具有重要的价值及应用前景。采用Illumina HiSep 2500转录组测序技术分别对12月龄的3尾雌性草鱼和3尾雄性草鱼的性腺组织的mRNA进行测序分析,精巢和卵巢共得到8 363个差异表达基因。与卵巢相比,精巢上调基因6 446个(77%),下调基因1 917个(23%),差异明显。将上述差异基因在Nr、GO和KEGG数据库进行比对,获得48种Go功能注释分类和313条KEGG代谢通路。分析发现,Go功能分类中"绑定"功能富集差异基因的数量最多,占总数的15.8%;KEGG代谢通路中"信号转导"通路富集差异基因的数量最多,占总数的10.2%。结合转录本数据,挑选与草鱼性腺发育相关的关键差异基因Dmrt1、amh、foxl2、cyp19a1a进行分析,研究显示,与卵巢相比,Dmrt1和amh基因在草鱼精巢中极显著高表达(p0.01);与精巢相比,cyp19a1a和foxl2基因在草鱼卵巢中显著高表达(p0.05),与转录组数据分析结论一致,说明Dmrt1和amh基因与早期草鱼精巢发育调控相关,cyp19a1a和foxl2基因与早期草鱼卵巢发育调控相关。本实验为进一步了解草鱼性别基因的调控机理提供数据依据。     

人eya2基因小干扰RNA表达载体的构建及表达

目的：设计并构建人eya2（eyes absent2）基因小干扰RNA（siRNA）的真核表达载体,并观察其沉默效果。方法：以人eya2为靶基因,以pSliencer2．1-U6 neo质粒为载体,根据人eya2的cDNA序列,设计含有小发卡结构的2条寡核苷酸序列,将其克隆到siRNA表达载体上;转化大肠杆菌DH5Ⅸ菌株,抽提质粒,测序分析;将重组质粒转染人胚肾293T细胞,通过荧光分析、Westemblot和转录活性实验检测其抑制效果。结果：重组体测序结果与目的序列相一致,证明构建了eya2 siRNA真核表达载体;荧光观察表明siRNA能显著减弱细胞中绿色荧光强度,抑制eya2基因表达;Westemblot分析证明构建的siRNA能有效抑制外源性及内源性eya2基因表达;转录活性测定表明,构建的siRNA能有效抑制eya2基因表达。结论：构建了eya2 siRNA真核表达载体,该siRNA能有效地抑制eya2基因表达。     

高通量转录组RNA-seq研究成年牛下丘脑-垂体-卵巢

肉牛的性成熟受下丘脑-垂体-卵巢(HPO)轴的调节,但其具体作用机制尚不清楚.为了探讨HPO轴繁殖相关基因和调控机制,采用高通量转录组RNA-seq技术,研究了成年安格斯牛(30个月大)的下丘脑、垂体和卵巢.结果表明,HPO共有18 179个基因在GO(基因本体论)中注释,37 158个基因在KEGG(京都基因百科全书和基因组)中注释,36 645个基因在KOG(KEGG同源数据库)中注释.GO分析表明,HPO富集了8种生殖相关功能,主要是受精、单个组织生殖过程、子宫胚胎发育和雌激素反应.KEGG分析发现,HPO富集300条信号通路(SP),主要是癌症SP和磷脂酰肌醇3激酶蛋白激酶(PI3K-Akt)SP.与生殖有关的SPs共有16条,主要是Notch SP、神经营养素SP、哺乳动物雷帕霉素(mTOR)SP和血管内皮生长因子(VEG F)SP.为今后肉牛繁殖性能的提高、分子育种和同行参考提供了科学依据.     

饥饿对中间球海胆MYP基因转录表达的影响

应用实时定量PCR技术对主要卵黄蛋白(Major yolk protein,MYP)基因在不同饥饿时期中间球海胆的体腔细胞、性腺、肠、胃中的转录表达差异进行了分析。结果表明,在正常状态下,MYP基因在体腔细胞、性腺、肠、胃等不同组织中的转录表达差异明显,肠中的表达量最高,其他组织中的表达量均较低。随饥饿时间的延长,MYP基因在体腔细胞中的表达量先迅速下降,而后稳定在较低水平,实验结束时下降至对照组的1.58%;在性腺中的表达量持续上升,实验结束时上升至对照组的679.75%;在肠中的表达量持续下降,实验结束时下降至对照组的33.33%;在胃中的表达量呈上升趋势,实验结束时上升至对照组的106.52倍。综合来看,饥饿状况下,中间球海胆肠中的MYP表达量持续下降,但仍是MYP的主要合成部位;性腺中MYP表达量持续上升,致使其MYP表达比重上升;胃、体腔细胞中表达量在饥饿过程中虽有变化,但总表达量很少,对MYP的整体表达影响不大。     

基于转录组测序的羽衣甘蓝叶色相关基因分析

叶色是羽衣甘蓝重要的观赏性状之一。本研究采用Illumina Hi-Seq2500高通量测序技术,对基因型纯合的紫叶和白叶羽衣甘蓝叶片进行转录组测序,筛选差异基因并与GO和KEGG数据库比对进行注释分析,分析羽衣甘蓝叶色形成相关基因。结果显示,获得高质量短读序共104 608 770条,筛选出紫叶相对白叶的差异表达基因1 993个,其中上调表达基因1 094个,下调表达基因899个。根据GO功能分类可分为生物过程、细胞组分和分子功能3大类64功能组。根据KEGG代谢通路分析可以分为171类,在叶色相关的类黄酮生物合成途径中黄酮醇合成酶(FLS)、二氢黄酮醇4-还原酶(DFR)上调以及类胡萝卜素生物合成途径中的类胡萝卜素β-环化酶上调与紫叶形成关系密切。本研究丰富了羽衣甘蓝的转录组信息,获得了一些差异表达基因,为进一步研究羽衣甘蓝叶色形成的遗传机制提供了有价值的信息。     

盐度胁迫对幼体大海马基因转录表达的影响

为探究大海马(Hippocampus kuda Bleeker)幼体在高盐、低盐胁迫条件下的基因表达水平的变化规律,对实验条件下的大海马幼体的肝脏样品进行了转录组测序。对照组(CK, 25‰)、高盐(HS-test, 31‰)和低盐(LS-test, 17‰)胁迫组共获得71794个单基因簇(Unigenes), N50为1780 bp,平均长度为820.71 bp。高盐胁迫组与对照组比较,共获得2740个差异表达基因(DEGs),其中495个DEGs上调, 2245个DEGs下调;与对照组相比,低盐胁迫组共获得3715个DEGs,其中1854个DEGs上调, 1861个DEGs下调。高/低盐胁迫组DEGs经KEGG数据库富集发现,高/低盐度胁迫均能导致大海马幼体体内氨基酸代谢、免疫代谢、能量和脂肪酸代谢相关基因受到影响。其中,低盐胁迫时能量代谢和氨基酸代谢的相关基因显著上调,高盐胁迫时脂肪酸代谢的相关基因显著下调,而高/低盐胁迫时免疫代谢的相关基因都显著上调。从经过盐度胁迫的大海马幼体的肝脏转录组中分别筛选到免疫相关基因Gst、Hsp70、Hsp90、Sod、Bcl-2、Gadd45...     

斑马鱼Gfi1.1基因的克隆及其体外转录

目的:克隆斑马鱼Gfi1.1基因的全长cDNA,运用T7 RNA聚合酶对含有Gfi1.1基因的ORF区进行体外转录,在体外合成5端带有帽子结构的Gfi1.1 mRNA分子,为后续研究斑马鱼Gfi1.1基因的功能打下基础。方法:应用RT-PCR从斑马鱼组织中扩增出Gfi1.1 cDNA片段,经回收纯化与pGM-T载体连接并转化感受态细菌DH-5α,通过蓝白筛选酶切鉴定阳性菌落,小量提取质粒,Nde I限制性内切酶线性化pGM-T-Gfi1.1质粒,运用T7 RNA聚合酶对Gfi1.1基因进行体外转录及加帽。经凝胶电泳对目的片段进行鉴定。结果:RT-PCR扩增获得约1.2 kb的DNA片段,DNA序列分析的结果与GenBank上的序列(NM_001020776)一致,酶切线性化及体外转录加帽pGM-T-Gfi1.1,凝胶电泳鉴定RNA分子大小与预期完全一致。结论:成功克隆斑马鱼Gfi1.1基因并体外转录及加帽pGM-T-Gfi1.1。     

野生稻基因导入系W6023对白叶枯菌的抗谱及转录组差异表达基因分析

水稻白叶枯病是世界性水稻病害,严重威胁水稻的高产和稳产。为了挖掘水稻抗白叶枯病新基因,本研究对一个野生稻基因导入系W6023进行了白叶枯病多菌系接种鉴定及抗谱分析,发现W6023具有广谱抗病性。用强致病菌PXO99诱导W6023及其感病轮回亲本IR24后进行转录组测序,分别获得105644962和91022599条序列,通过GO注释及KEGG富集分析,发现差异表达基因主要富集在次生代谢产物的生物合成、植物激素信号转导及糖代谢途径等方面。在这些差异表达基因中,发现203个基因的表达有显著差异,其中在W6023中上调表达的基因有114个(56.2%),下调表达的有89个(43.8%),而且35.9%分布在第11染色体上。生物信息学分析发现在203个差异表达基因中有16个属于类抗病基因,如NBS-LRR等;14个直接或间接与水稻体内过氧化物的代谢相关,如编码过氧化物酶和金属硫蛋白等;6个编码抗病相关转录因子,如WRKY和NAC等;18个为信号传导相关基因,编码钙调素结合蛋白和萜类合成酶等。随机选择6个W6023中上调表达和3个IR24中上调表达的基因进行RT-PCR及qRT-PCR分析,结果与转录组测序结果一致,表明本研究获得的转录组测序数据结果是可靠的,为以后更深入挖掘W6023的抗病基因及分子机理研究提供了基础。     

长期低氧胁迫下斑马鱼的卵巢转录组特征分析

为探明低氧胁迫对雌性性腺发育的影响,本研究针对常氧与长期低氧胁迫下的斑马鱼卵巢组织进行转录组测序,研究长期低氧胁迫与常氧条件下斑马鱼卵巢组织的转录组和基因表达谱差异.低氧与常氧卵巢差异表达显著的基因总数为675个,其中381个基因在低氧卵巢中显著下调,294个基因在低氧卵巢中表达量显著上调.对差异表达显著的基因进行GO...     

高原鼠兔褪黑素受体在下丘脑-垂体-性腺轴中的表达分析

褪黑素在季节性繁殖动物的生殖细胞发育与性腺功能调控中发挥重要作用,然而褪黑素如何通过下丘脑-垂体-性腺（HPG）轴实现其调控功能目前仍不清楚。因此,本研究选取典型的长日照动物——高原鼠兔（Ochotona curzoniae）作为研究对象,使用酶联免疫吸附法测定繁殖期与非繁殖期雌雄鼠兔的血清褪黑素水平昼夜变化,利用实时荧光定量PCR分析褪黑素受体基因Mtnr1a与Mtnr1b在下丘脑、垂体与性腺中的表达水平,并通过免疫荧光染色进一步确认两种受体在性腺不同类型细胞中的定位。结果显示,非繁殖期雄性鼠兔的血清褪黑素含量始终高于繁殖期,且呈现不同的昼夜变化模式;雌性鼠兔的血清褪黑素含量远低于雄性鼠兔,且在繁殖期与非繁殖期并不存在显著差异。Mtnr1a与Mtnr1b在下丘脑、垂体与性腺中均有表达,雄性鼠兔在下丘脑与垂体中表现出繁殖期与非繁殖期基因表达的显著差异,而雌性鼠兔基因表达的差异主要出现在垂体与性腺中。两种受体蛋白在雄性性腺生殖细胞和支持细胞中均有分布,但MTNR1A更局限于精原细胞内,MTNR1B则在管腔内生殖细胞中表达。雌性性腺中MTNR1A在卵母细胞胞质内有表达,但更集中表达于颗粒细胞;MTNR1B在颗粒细胞以及卵母细胞核质内均有表达,且在生长卵泡的卵泡膜细胞中呈现高表达。以上结果表明,褪黑素调控雌雄高原鼠兔季节性繁殖的模式并不相同,其作用不仅限于通过下丘脑-垂体-性腺轴的间接调控,也可能通过性腺内靶向受体直接影响生殖细胞与体细胞命运。     

Sex-related expression of 20alpha-hydroxysteroid dehydrogenase mRNA in the adult mouse.

The enzyme 20alpha-hydroxysteroid dehydrogenase (20alpha-HSD) catalyzes the conversion of progesterone into its inactive form, 20alpha-hydroxyprogesterone. To gain information about the exact sites of 20alpha-HSD mRNA expression, we performed in situ hybridization using a (35)S-labeled cRNA probe in tissues of adult mice of both sexes. 20alpha-HSD mRNA was expressed in both male and female gonads. In the ovary, high expression was found in luteal cells of corpora lutea, while much lower expression could be detected in granulosa cells of growing follicles. In the testis, a specific hybridization signal was detected only in Leydig cells. In the female reproductive tract, 20alpha-HSD mRNA was found in the epithelial cells of the uterine cervix. In the adrenal cortex, only the zona reticularis exhibited specific radiolabeling, the expression being very high in the female and very low in the male. In the skin, specific labeling was restricted to sebaceous glands, the hybridization signal being much higher in the female than in the male. In the liver, 20alpha-HSD mRNA was found in hepatocytes, with a higher degree of expression in the female. In the kidney, specific labeling was observed in the epithelial cells of distal convoluted tubules, the signal being also much more striking in the female than in the male. In non-reproductive tissues, it clearly appears that the expression of 20alpha-HSD mRNA is higher in the female than in the male, suggesting that 20alpha-HSD may play an important role in reducing the intracellular concentration of progesterone originating from the circulation at a much higher level in the female.     

Effect of progesterone on embryo survival

Increased genetic selection over the past 40 years has resulted in a dairy cow with an improved biological efficiency for producing milk but with an associated reduced fertility. Embryo loss is the greatest factor contributing to the failure of a cow to conceive. The extent and timing of embryo loss indicates that 70% to 80% of this loss occurs in the first 2 weeks after artificial insemination (AI). This is the period when a number of critical phases in embryo development occur and where protein accretion, substrate utilization and embryo metabolism increase dramatically. During this time the early embryo is completely dependent on the oviduct and uterine environment for its survival and it is likely that the embryo requires an optimal uterine environment to ensure normal growth and viability. There is increasing evidence of an association between the concentration of systemic progesterone and early embryo loss and that progesterone supplementation of cows, particularly those with low progesterone, can reduce this loss. While progesterone is known to affect uterine function and embryo growth, little is known about the uterus during the period of early embryo loss and how this is affected by changes in the concentration of systemic progesterone. The expression of uterine genes encoding the transport protein retinol binding protein (RBP) and the gene for folate binding protein (FBP) appear to be sensitive to changes in systemic progesterone, particularly during the early luteal phase of the cycle. Uterine concentrations of proteins also seem to be regulated by stage of cycle; however, their relationship with the systemic concentration of progesterone is unclear. There is an urgent need to characterize the uterine environment from a functional perspective during the early part of the luteal phase of the cycle, particularly in the high-producing cow, in order to understand the factors contributing to early embryo loss and in order to devise strategies to minimize or reduce this loss.     

Cloning, expression and characterization of gene sgcD involved in the biosynthesis of novel antitumor lidamycin

Lidamycin, an antitumor antibiotic composed of a macro-molecule peptide and enediyne chromophore[1] and originally named C1027, is produced by Streptomyces globisporus C1027 isolated from the soil in Qianjiang County, Hubei Province, China. It has extremely high antitu- mor activity, which has been proved to be the highest among antitumor compounds[2], being 1000- fold higher than that of adriamycin commonly used in clinic. The structure of lidamycin consists of an acid apoprotein and a chr…     

Cloning, expression and characterization of gene sgcD involved in the biosynthesis of novel antitumor lidamycin

Lidamycin with high antitumor activity is a novel enediyne antitumor antibiotic produced by Streptomyces globisporus C1027. The 75 kb biosynthesis gene cluster of lidamycin containing 33 open reading frames has been cloned from S. globisporus C1027. In this paper, the function of sgcD (ORF24) is investigated. Gene disruption experiment proved that sgcD is involved in lidamycin biosynthesis. With homologous comparing analysis, we deduce that sgcD codes aminomutase catalyzing a-tyrosine to β-tyrosine which is one motif for lidamycin. To identify the function of enzyme coded by sgcD, sgcD is cloned into vector pET30a for inducing expression and the activity of expression product is analyzed. The result showed that the expression product of sgcD has the activity of aminomutase. Aminomutase coded by sgcD is the first characterized enzyme involved in the biosynthesis of enediyne antitumor antibiotics. Our research will be helpful to clarifying the biosynthesis mechanism of such kind of antibiotic and to producing new antitumor compounds.     

ste7与ste15双基因敲除对依博素生物合成的影响

摘要：【目的】研究ste7和ste15基因双敲除对依博素生物合成的影响。【方法】通过基因同源重组双交换,对ste15基因缺失突变株Streptomyces sp. 139 (ste15 -)再进行ste7基因的敲除,经Southern杂交验证,获得了ste7和ste15双基因缺失变株Streptomyces sp. 139 (ste7 - ste15 -)。对该突变株进行了基因互补。气相色谱分析ste7和ste15双基因缺失突变株及互补株产生的胞外多糖单糖组分,排阻色谱测定衍生物的重均分子量,ELISA法