Investigation of the early stages of human γD-crystallin aggregation process

Cataract, a major cause of visual impairment worldwide, is a common disease of the eye lens related to protein aggregation. Several factors including the exposure of ultraviolet irradiation and possibly acidic condition may induce the unfolding and subsequent aggregation of the crystallin proteins leading to crystalline lens opacification. Human γD-crystallin (HγDC), a 173 residue monomeric protein, abundant in the nucleus of the human eye lens, has been shown to aggregate and form amyloid fibrils under acidic conditions and that this aggregation route is thought to be a potential initiation pathway for the onset of age-related nuclear cataract. However, the underlying mechanism of fibril formation remains elusive. This report is aimed at examining the structural changes and possible amyloid fibril formation pathway of HγDC using molecular dynamics and molecular docking simulations. Our findings demonstrated that incubation of HγDC under the acidic condition redistributes the protein surface charges and affects the protein interaction with its surrounding solvent environment. This brings about a twist motion in the overall tertiary structure that gives rise to newly formed anti-parallel β-strands in the C-terminal flexible loop regions. The change in protein structural conformation also involves an alteration in specific salt-bridge interactions. Altogether, these findings revealed a plausible mechanism for amyloid fibril formation of HγDC that is important to the early stages of HγDC aggregation involved in cataractogenesis.     

Supramolecular non-amyloid intermediates in the early stages of α-synuclein aggregation

The aggregation of α-synuclein is associated with progression of Parkinson's disease. We have identified submicrometer supramolecular structures that mediate the early stages of the overall mechanism. The sequence of structural transformations between metastable intermediates were captured and characterized by atomic force microscopy guided by a fluorescent probe sensitive to preamyloid species. A novel ~0.3-0.6 μm molecular assembly, denoted the acuna, nucleates, expands, and liberates fibers with distinctive segmentation and a filamentous fuzzy fringe. These fuzzy fibers serve as precursors of mature amyloid fibrils. Cryo-electron tomography resolved the acuna inner structure as a scaffold of highly condensed colloidal masses interlinked by thin beaded threads, which were perceived as fuzziness by atomic force microscopy. On the basis of the combined data, we propose a sequential mechanism comprising molecular, colloidal, and fibrillar stages linked by reactions with disparate temperature dependencies and distinct supramolecular forms. We anticipate novel diagnostic and therapeutic approaches to Parkinson's and related neurodegenerative diseases based on these new insights into the aggregation mechanism of α-synuclein and intermediates, some of which may act to cause and/or reinforce neurotoxicity.     

Applying social life cycle assessment in the early stages of a project development — an example from the mining sector

The International Journal of Life Cycle Assessment - Mining of raw materials have both positive (e.g., creation of values and jobs along their supply chains and the supply chains they enter) and...     

Nature versus nurture? Consequences of short captivity in early stages

Biological changes occurring as a consequence of domestication and/or captivity are not still deeply known. In Atlantic salmon (Salmo salar), endangered (Southern Europe) populations are enhanced by supportive breeding, which involves only 6 months of captive rearing following artificial spawning of wild‐collected adults. In this work, we assess whether several fitness‐correlated life‐history traits (migratory behavior, straying rate, age at maturity, and growth) are affected by early exposure to the captive environment within a generation, before reproduction thus before genetic selection. Results showed significant differences in growth and migratory behavior (including straying), associated with this very short period of captivity in natural fish populations, changing even genetic variability (decreased in hatchery‐reared adults) and the native population structure within and between rivers of the species. These changes appeared within a single generation, suggesting very short time of captivity is enough for initiating changes normally attributed to domestication. These results may have potential implications for the long‐term population stability/viability of species subjected to restoration and enhancement processes and could be also considered for the management of zoo populations.     

The common origins of the pigments of life—early steps of chlorophyll biosynthesis

The complex pathway of tetrapyrrole biosynthesis can be dissected into five sections: the pathways that produce 5-aminolevulinate (the C-4 and the C-5 pathways), the steps that transform ALA to uroporphyrinogen III, which are ubiquitous in the biosynthesis of all tetrapyrroles, and the three branches producing specialized end products. These end products include corrins and siroheme, chlorophylls and hemes and linear tetrapyrroles. These branches have been subjects of recent reviews. This review concentrates on the early steps leading up to uroporphyrinogen III formation which have been investigated intensively in recent years in animals, in plants, and in a wide range of bacteria.Abbreviations ALA 5-aminolevulinic acid - ALAS 5-aminolevulinic acid synthase - GR glutamyl-tRNA reductase - GSA glutamate-1-semialdehyde - GSAT glutamate-1-semialdehyde aminotransferase - HMB hydroxymethylbilane - PBG porphobilinogen - PBGD porphobilinogen deaminase - PBGS porphobilinogen synthase - URO uroporphyrin - URO'gen uroporphyrinogen - US uroporphyrinogen III synthase     

Hydrogen sulfide stimulates β-amylase activity during early stages of wheat grain germination

We recently reported that H₂S could significantly promote the germination of wheat grains subjected to aluminum (Al³⁺) stress.¹ In these experiments seeds were pretreated with the H₂S donor NaHS for 12 h prior to Al³⁺ stress. During this pre-incubation period we observed that H₂S increased the activity of grain amylase in the absence of Al³⁺. Using embryoless half grains of wheat we now show that H₂S preferentially affects the activity of endosperm β-amylase and that α-amylase synthesis and activity is unaffected by this treatment.Key words: α-amylase, β-amylase, hydrogen sulfide, reactive sulfur species, seed germination, wheat (triticum)Cereal grains contain many acid hydrolases, some synthesized de novo by the scutellum and aleurone layer and others are found preformed in the starchy endosperm. The amylases are the best known of these types of enzymes. α-Amylases are synthesized and secreted by the scutellum and aleurone layer, and in the case of aleurone isoforms their synthesis is regulated by GAs and ABA.^2,3 Whereas GAs stimulate the synthesis of α-amylases and many other secreted hydrolases, ABA inhibits these processes. β-Amylases, on the other hand, are preformed enzymes whose synthesis is not affected by ABA and GAs. Two forms of β-amylase are found in wheat grains, one is a soluble form present in ungerminated grains which can form high-molecular-weight homopolymers or heteropolymers; the other is bound in an inactive form via S-S linkages to proteins at the periphery of starch grains.^4,5 The activation of β-amylases is thought to result at least in part from their release from endosperm proteins by the action of GA-induced proteases secreted from the aleurone layer.⁶To examine in more detail the effect of H₂S on wheat grain amylases we used de-embryontated wheat grains where only the aleurone layer and starchy endosperm were the possible sources of amylase activity. Embryoless half grains of wheat (Triticum aestivum L., c.v Yangmai 158) were incubated in water, the H₂S donor NaHS, GA, or combinations of these treatments for up to 12 h. After incubation soluble proteins were isolated from grains by homogenizing in buffer and amylase activity was determined colorimetrically using starch-I₂KI. Figure 1A shows that during the first 8 h of incubation there was no increase in amylase activity from half grains incubated in H₂O or GA but there was a small but significant increase in activity after 10 h and 12 h of incubation in these two treatments. By contrast, incubation in NaHS brought about a three-fold increase in amylase activity by six h and this increased to about five-fold above the initial activity by 12 h of incubation.Open in a separate windowFigure 1Amylolytic activity from wheat half grains measured colorimetrically (A), by diffusion into agar-starch (B) and following native gel electrophoresis (C and D). (A) Half grains were incubated in water (CK), 0.5 mM NaHS, 10 µM GA3 and 0.5 mM NaHS plus 10 µM GA3 for up to 12 h. Amylase activity was measured colorimetrically on grain homogenates by the starch I-KI method. (B) Half grains pre-incubated as (A) then transferred to agar containing 0.2% starch and 2 mM EDT A for a further 12 h. Amylolytic activity was determined by the diameter of the starch-free halo after flooding the agar-starch plate with I-KI solution. Seeds treated with CK, NaHS, GA₃ and NaHS plus GA₃ were lined from left to right in each plate, respectively. (C and D) Wheat grains incubated for 12 h in H₂O, NaHS, GA₃ and Hb (0.1 g/L) and combinations of these treatments, were homogenized and aliquots of extracts were electrophoresed by non-denaturing PAGE. After electrophoesis gels were soaked in starch, washed and stained with I-KI. Amylolytic activity is shown by cleared areas in the gel. For the gel in (C), homogentes were incubated with 25 mM EDT A to inactivate α-amylase and for (D), they were heated at 70°C to inactivate β-amylase.We confirmed these results by incubating wheat half gains on 0.2% agar containing 0.2% soluble starch and 2 mM EDTA (Fig. 1B). In this experiment, half grains were first incubated in H₂O, GA or NAHS for up to 12 h as for the experiment shown in Figure 1A and half grains were transferred to agar to estimate amylase activity. Because α-amylases are Ca²⁺-containing metalloenzymes whose activities are dependent on Ca²⁺ binding we incorporated EDTA into the agar to favor the appearance of β-amylase activity. The data in Figure 1B confirm what we observed when we measured amylase activity colorimetrically, namely that starch degrading activity was high in half grains exposed to NaHS but low in those incubated in H₂O or GA. From this experiment we also concluded that the starch degrading activity was likely a result of the activity of β-amylase as α-amylase activity would have been reduced or eliminated by the presence of EDTA.We established that the amylolytic activity produced by wheat grains in response to the NaHS donor was largely β-amylase by selectively inhibiting amylase activities following native gel electrophoresis. α-Amylases are heat stable but are sensitive to metal chelators, whereas β-amylases are denatured by heating but are not inhibited by chelators such as EDTA.⁴ Figure 1C and D show the activities of amylase isoforms measured by incubating non-denaturing polyacrylamide gels in 1% soluble starch followed by staining in I-KI. Figure 1C shows amylolytic activity after incubation of the gel in starch containing 25 mM EDTA. Two distinct sets of bands are seen together with minor bands of activity. Whereas group I amylases do not change significantly following treatment incubation in the presence of NaHS or GA, group II amylases show high activity in the presence of NaHS, but show no activity with GA (Fig. 1C). When the enzyme preparations were heated to 70°C for 15 min before electrophoresis almost all activity was lost showing that the activity seen in the absence of heating but in the presence of EDTA was likely that of β-amylase. We also used hemoglobin (Hb) a nonspecific H₂S scavenger to show that the effects of NaHS were indeed via the production of H₂S. Figure 1C shows that Hb almost completely abolished the inductive effect of NaHS on β-amylase activity.Although at present we have no direct evidence that H₂S acts as an endogenous regulator of endosperm function in cereal grains, it is tempting to speculate that this is indeed the case. Our previous work showed an increase in the synthesis of H₂S by wheat grains that is detected as early as 12 h following the start of imbibition in H₂O.¹ Although we have no information on the route of H₂S synthesis in wheat, there is abundant evidence that plants synthesize H₂S as its emission has been observed in many species.^7–13 In plants, H₂S is thought to be released from cysteine via a reversible O-acetylserine (thiol) lyase (OASTL) reaction, and recently several L- and D-cysteine-specific desulfhydrase candidates have been isolated and partially characterized from Arabidopsis thaliana, confirming H₂S release by the action of desulfhydrases in various cellular compartments.^14–17 The induction of L-cysteine desulfhydrase upon pathogen attack,¹⁸ freezing tolerance by H₂S fumigation,¹⁹ emission of H₂S from plants exposed to SO₂ injury,^10,20 and abiotic stresses tolerance in plants treated with H₂S donor,^1,21–24 all infer that H₂S is involved in these responses.It is also tempting to speculate that H₂S may work in cereal grains by influencing redox status.^15,25 It has been proposed that H₂S can bring about an increase in synthesis of glutathione from cysteine and an overall improvement of plant performance under stress. The release of β-amylase from starchy endosperm proteins or the dissociation of free β-amylase from small homopolymers or heteropolymers has been shown to be enhanced by reducing agents such as dithiothreitol and by S-H proteinases. We propose that one plausible action of H₂S in cereal endosperm is to enhance reactive sulfur species that can lead to reduction of S-S bonds between β-amylase and its binding partners in the endosperm. Release of activated β-amylase would then be free to participate in starch degradation providing sugar units for seedling growth and development prior to the induction of α-amylases by GAs.     

Protein composition of different stages in the life cycle of Ulva mutabilis,Føyn

Summary Soluble protein, about 15% of the total cellular protein, was extracted from different stages in the haplodiplontic life cycle of Ulva mutabilis. The electrophoretic band pattern of the protein extracts from the haploid gametophyte and the diploid sporophyte were found to be the same, except for one slow moving band present in the gametophyte, but lacking in the diploid sporophyte. This band was also missing in the extract from the haploid parthenosporophyte, but is seen in the extract from the zoospores. It was found that the synthesis of the protein in this band occurred during most of the preparation period preceding meiosis. The band is not seen in extracts from gametes, and it is inferred that this protein is broken down during the period preceding the mitotic gametangial division in the gametophyte. So far the protein making up this band behaves as should be required for a factor determining the shift in generation during the life cycle.     

Does ghrelin explain accelerated gastric emptying in the early stages of diabetes mellitus?

During the early stages of diabetes, gastric emptying is often accelerated, rather than delayed. The mechanism of accelerated gastric emptying in diabetes has not been fully studied. A recent study showed that plasma ghrelin levels were elevated in diabetes. As postprandial antropyloric coordination plays an important role in mediating solid gastric emptying, we hypothesize that the elevated plasma ghrelin levels increase postprandial antropyloric coordination to accelerate emptying in the early stages of diabetes. To test this hypothesis, rats were made diabetic by streptozotocin (STZ; 50 mg/kg) injection, and, 2 wk later, pre- and postprandial plasma ghrelin levels, antropyloric coordination, and solid gastric emptying were determined. In control rats, plasma ghrelin levels were immediately reduced after feeding. In contrast, plasma ghrelin levels remained within the fasted levels in STZ rats after feeding. In STZ rats, gastric emptying was significantly accelerated (77.4 +/- 3.2%, n = 6), compared with that of control rats (58.8 +/- 2.5%, n = 6, P < 0.05). Treatments with anti-ghrelin antibodies attenuated accelerated gastric emptying in STZ rats (50.1 +/- 3.5%, n = 6, P < 0.05), while having little effect in vehicle control rats. The incidence of postprandial antropyloric coordination was significantly increased in STZ rats, compared with that of control rats (P < 0.05). Treatments with anti-ghrelin antibodies suppressed this enhanced antropyloric coordination in STZ rats. Our study suggests that elevated endogenous ghrelin enhances antropyloric coordination, which accelerates gastric emptying in the early stages of diabetes.     

Does magnesium dysbalance participate in the development of insulin resistance in early stages of renal disease?

We investigated the potential role of magnesium (Mg) dysbalance in the pathogenesis of insulin resistance (IR) in patients with mildly-to-moderately decreased renal function (creatinine: 142.8+/-11.0 mmol/l). The data were compared to those of 8 age- and sex-matched healthy controls (CTRL). The standard oral glucose tolerance test (oGTT) was performed in 61 patients. Twenty-two patients were classified as IR according to their values on fasting and after-load immunoreactive insulin concentrations. Serum and total erythrocyte Mg (tErMg) (atomic absorption spectro-photometry) and free erythrocyte Mg (fErMg) concentrations ((31) P NMR spectroscopy) were determined prior to and two hours after the glucose load. Ten out of 39 insulin-sensitive (IS) patients, but only one out of 22 insulin-resistant (IR) patients, had a low basal fErMg concentration (<162.2 micromol/l, chi2, p<0.01). IR patients had higher serum Mg, total erythrocyte Mg and bound erythrocyte Mg (bErMg) concentrations (both before and after glucose load) when compared with the IS group. Both groups responded to the glucose load with a significant decrease in serum Mg concentration (within the normal range), while the IR group also exhibited a decline in tErMg and bErMg. The mean sum of insulin needed to metabolize the same glucose load correlated positively with tErMg (r=0.545, p<0.01) and bErMg (r=0.560, p<0.01) in the IR patients. It is concluded that, at an early stage of renal dysfunction, IR is not associated with the decline in free erythrocyte Mg concentration, but the magnesium handling in red blood cells is altered.     

How does seed heteromorphism influence the life history stages of Atriplex sagittata (Chenopodiaceae)?

Atriplex sagittata is an annual, heterocarpic species producing three types of fruits, (i) dormant ebracteate (further termed type A), (ii) dormant bracteate (type B) and (iii) non-dormant bracteate (type C). In this study, we investigated populations grown from particular fruit types under different density regimes, and assessed their fate in particular life stages throughout a complete growing season. Differences in germination date among populations grown from seeds of the three fruit types were found, followed by differences in population density and plant size. Low population density and total biomass was recorded in populations of types A and B fruit (which are smaller and exhibit less germination), but the low density was not associated with faster growth of individual plants. Type C fruit, with bigger seeds and higher germinability, generated populations with higher densities and higher total biomass than populations generated from type A and B. There was a significant effect of plant density on dry weight of individual plants, regardless of the fruit type from which they were grown. Under both density regimes, plants grown from types A and B fruit were lighter than those grown from type C fruit. Plants grown from different fruit types produced dispersal units (fruits+bracteoles) of different mean weight which increased from A to B to C. However, the total fruit weight was not significantly different when plant size was used as a covariate. Maternal effect on seed germinability, exhibited by plants grown from the three fruit types, was not significant. However, a remarkable trend was found. Lower germination was recorded in type A and B fruits produced by plants which grew under higher densities. It is concluded that plants derived from different fruit types differ in growth characteristics and population parameters which can have pronounced effect on the life cycle and population regeneration in successive years.     

Is metamorphosis a critical interval in the early life of marine fishes?

Synopsis Small volumes of food in ‘stomach’, large proportions of empty ‘stomachs’ and small maximum sizes of prey during metamorphosis of cod,Gadus morhua, all point to an energy crisis during this developmental interval. The small size of the developing stomach of the 10–14 mm long cod may be partly responsible for the above mentioned difficulties during metamorphosis. A hypothesis based on Hjort's ‘critical stage theory’ is proposed, adding another critical interval at metamorphosis. Based on the presented data on cod and reports on other species in the literature, the new critical interval is discussed for larvae of marine fish species in general.     

Effect of interferon-α 2b on cells from human embryonic nerve tissue in the early stages of neurogenesis

We studied the effects of interferon (IFN)- 2b on cells obtained from the brain of human embryos (4 to 12 weeks of gestation). It was demonstrated that IFN exerts modulatory effects on biochemical and physico-chemical properties of cells of embryonic nerve tissue in the early stages of embryonic development (from 4 weeks of gestation). IFN decreased the content of protein, inhibited the activity of Na⁺,K⁺-ATPase, and induced changes in the superficial charge of the plasma membrane. Based on the obtained experimental data, we suppose that IFN- 2b is involved in regulation of neurogenesis.Neirofiziologiya/Neurophysiology, Vol. 36, Nos. 5/6, pp. 363–369, September–December, 2004.This revised version was published online in April 2005 with a corrected cover date and copyright year.     

Possible involvement of neuronal nicotinic acetylcholine receptors in compensatory brain mechanisms at early stages of Parkinson’s disease

A role of nicotinic acetylcholine receptors (nAChR) in the development of Parkinson’s disease (PD) has been investigated using two mouse models corresponding to the presymptomatic stage and the early symptomatic stage of PD. Quantitative radioligand analysis of nAChR in the striatum and substantia nigra (SN) was performed using the radioactive derivatives of epibatidine, α-conotoxin MII, and α-bungarotoxin. These are selective ligands for different nAChR subtypes. The number of ligand-binding sites changed differently depending on their location in the brain, the stage of the disease and the receptor subtype. In the striatum epibatidine binding decreased by 66% and 70% at the presymptomatic and early symptomatic stages, respectively, while in SN epibatidine binding demonstrated a significant (160%) increase at the presymptomatic stage. The α-conotoxin MII binding to striatal dopaminergic axonal terminals at the presymptomatic stage decreased by 20% and at the symptomatic stage it demonstrated a further decrease. Striatal α-bungarotoxin binding increased at the presymptomatic stage and decreased at the early symptomatic stage. In SN, the level of α-bungarotoxin binding decreased at the presymptomatic stage and remained constant at the symptomatic stage. A significant decrease in the expression of Chrna4 and Chrna6 genes encoding α4 and α6 nAChR subunits was observed in SN at the early symptomatic stage, while a 13-fold increase in expression of the Chrna7 gene encoding the α7 nAChR subunit was detected at the presymptomatic stage. The data obtained on the altered mRNA levels or functional cholinergic receptors suggest possible involvement of nAChR in compensatory mechanisms at early PD stages.