Pine stumps act as hotspots for seedling regeneration after pine dieback in a mixed natural forest dominated by <Emphasis Type="Italic">Chamaecyparis obtusa</Emphasis>

Over the past few decades, rural forest ecosystems in Japan have experienced dynamic vegetation changes due to forest dieback and changes in land use, leading to the loss of local species populations and biodiversity. The aim of this study was to evaluate the importance of pine (Pinus densiflora) stumps and logs for tree seedling regeneration in a mixed natural forest in Kyoto Prefecture, Japan, that had previously experienced severe pine dieback, and to determine which factors most greatly affect seedling establishment. Seedlings of 17 tree species were recorded on pine stumps and logs in later stages of decay, among which Chamaecyparis obtusa and Rhododendron reticulatum were most dominant. Both of these species had a greater density on pine stumps than on logs or soil, despite stumps covering less than 0.5% of the study area. In addition, the seedling densities of both species were positively associated with moss cover on coarse woody debris, but negatively associated with wood pH. Brown rot in the sapwood and heartwood, which occurred more frequently in stumps than in logs, also positively associated with the seedling densities of both species. Predictive modelling showed that C. obtusa seedlings exhibited a stronger response to pH in stumps than in logs. Therefore, since brown-rotted wood is acidic due to fungal decay activities, brown-rotted pine stumps may present hotspots of C. obtusa seedling regeneration at the study site.     

Effect of temperate forest tree species on soil dehydrogenase and urease activities in relation to other properties of soil derived from loess and glaciofluvial sand

We investigated the effects of several tree species on dehydrogenase and urease activities in soils derived from two different parent materials (glaciofluvial sand and loess) in forested areas in southern Poland. We hypothesized that coniferous forests (pine, spruce) alter the soil cation exchange capacity (CEC) and decrease soil pH and, therefore, might decrease soil enzyme activities compared with broadleaf species growing on similar soils. Eight paired plots (12 × 12 m) were established on glaciofluvial sand in pine (Pinus sylvestris) + oak (Quercus robur) and spruce (Picea abies) + pine stands, as well as on loess-derived soils: beech (Fagus sylvatica) + pine and hornbeam (Carpinus betulus) + pine stands. Each plot was a 4 × 4 m grid with 16 sampling points. In soil samples pH, soil texture, and organic carbon, nitrogen, base cation contents, dehydrogenase and urease activities were determined. On both parent materials, the soil pH was lower under coniferous species than under broadleaf species. The acidifying effect of tree species on sandy soil was in the order of spruce = pine > oak, while that on loess was pine > beech > hornbeam. Hornbeam and oak increased the soil pH and stimulated enzyme activity in the soil. The content of fine fraction enhanced potential enzyme activities in soils, thus the loess soils had greater dehydrogenase and urease activity. The results suggest that pine stores more soil organic C in association with silt increasing the pool of stabilized soil organic C.     

Influence of atmospheric pollution on the morphological parameters of the assimilation apparatus of pine and spruce in the basin of the Northern Dvina

The dynamics of damage and litter of the needles of pine Pinus sylvestris (L.) and spruce Picea obovata Ledeb. × P. abies (L.) Karst. in the basin of the Northern Dvina under atmospheric pollution was studied. Correlations of morphometric parameters of the assimilation apparatus with the distance to the source of emissions and concentrations of pollutants in the air, snow, and soil and heavy metals in needles were revealed.     

Dissecting the Effects of Diameter on Wood Decay Emphasizes the Importance of Cross-Stem Conductivity in <Emphasis Type="Italic">Fraxinus americana</Emphasis>

Pest outbreaks are driving tree dieback and major influxes of deadwood into forest ecosystems. Understanding how pulses of deadwood impact the climate system requires understanding which factors influence greenhouse gas production during wood decay. Recent analyses identify stem diameter as an important control, but report effects that vary in magnitude and direction. This complexity may reflect interacting effects of soil contact, geometry and variable tissue properties. To dissect these effects, we implemented a three-way factorial experiment in Fraxinus americana, (white ash), an iconic North American species threatened by an invasive beetle. Soil contact accelerated decay rates by an order of magnitude with an effect that varied with stem diameter, not bark presence. After experimentally controlling surface area-to-volume ratio, half-buried wide stems decayed more slowly than half-buried narrow stems but more quickly than the aggregate decay rate of buried and suspended stems. These results closely matched variation in moisture content within and among samples, suggesting that limited vertical conduction of soil moisture through deadwood mediates the effect of stem diameter on wood decay. Soil contact also influenced greenhouse gas concentrations reinforcing recent evidence that deadwood acts as a source for CO₂ and CH₄ while acting as a sink for N₂O. Our results suggest that managing tree species affected by pest outbreaks, including F. americana, for biomass salvage and greenhouse gas mitigation requires understanding traits that mediate wood permeability and diffusivity to soil moisture and greenhouse gases.     

天宝岩长苞铁杉林倒木接触处土壤酶活性变化及其环境效应

倒木是森林生态系统中重要的结构性和功能性成分,但分解过程十分缓慢,目前有关土壤生物学特性对其分解影响机制的研究甚少。通过分析环境因子对选择天宝岩国家级自然保护区长苞铁杉林内倒木接触处土壤酶活性的影响,探讨酶活性对倒木分解机制、土壤进程的影响及特定酶活性的时空分布格局。研究结果表明:天宝岩长苞铁杉林内倒木接触处土壤酶活性的变异系数属中高等变异程度,纤维素分解酶活性受环境影响最大,蛋白酶受影响最小;倒木的覆盖有利于提高土壤酶活性,尤其是显著地提高了纤维素酶活性,蛋白酶及脲酶活性随腐烂等级升高而降低,纤维酶活性呈升高趋势;在所有环境因子中,土壤基质环境对土壤酶活性的解释量最大,表明化学基质环境对土壤酶活性的影响不容忽视,土壤酶活性随土壤SOC、TN含量的增加而升高,随海拔升高而降低,越往南坡,土壤酶活性越高。研究揭示倒木分解与土壤酶活性之间相互促进、相互制约,倒木的存在对驱动森林生态系统的碳循环有重要意义。     

A farm-scale investigation of the organic matter composition and soil chemistry of Andisols as influenced by land use and management

Andisols are characterised by having abundant reactive Al in the form of short-range ordered (SRO) Al constituents and organo-Al complexes, which facilitates the accumulation of soil organic matter (OM). However, recent studies of New Zealand pastoral systems have reported loss of carbon (C) from Andisols when under intense management. This study compares the organic and inorganic chemistry of Andisols on two adjacent pasture sites under different pastoral management regimes (Paddock 2 being more intensively managed than Paddock 1), as well as under a nearby pine stand (Forest). Mean soil pH-H₂O in Forest (5.3) was significantly lower (P?<?0.05) than that in Paddock 1 (5.7), which itself was significantly lower (P?<?0.05) than in Paddock 2 (6.1). Soil C concentrations were significantly higher (P?<?0.05) in the soils under pasture than under pine (63.8 g C/kg), and C in Paddock 1 (98.1 g C/kg) was significantly higher (P?<?0.05) than in Paddock 2 (84.1 g C/kg). The ratio of Al in organo-Al complexes (as estimated with sodium pyrophosphate) to the sum of Al in both SRO and organo-Al complexes (Al_p/Al_o) was significantly smaller (P?<?0.05) as the alkalinity of the soils increased (0.38, 0.23, 0.16 for Forest, Paddock 1 and Paddock 2, respectively). At the molecular level, soils under Forest had a larger relative contribution of degraded products of plant polysaccharides than those under pasture, while these had a larger contribution of fresh (e.g. cellulose and cutan/suberan aliphatic structures) and N-rich OM (e.g., microbial fingerprints, denoting a high microbial activity). Dissolved organic C content in the rhizosphere of pasture species was similar between paddocks, but Paddock 2 had a significantly (P?<?0.05) greater contribution of organic acids of MW?<?500 Da and higher pH (6.8 vs. 6.2). The results (1) confirm the common enrichment in organic C of New Zealand top soils under pasture compared to those under pine, and (2) reveal that the changes in the soil chemistry associated with pasture management may weaken the ability of these soils to preserve OM.     

Olfactometric evidence for aggregation pheromone production by females of the four-eyed fir bark beetle <Emphasis Type="Italic">Polygraphus proximus</Emphasis> Blandf. (Coleoptera,Curculionidae: Scolytinae)

Chemical communication of the four-eyed fir bark beetle Polygraphus proximus Blandf., an aggressive invasive pest of the Siberian fir Abies sibirica Ledeb., was experimentally studied using a four-way olfactometer of a modified design, in which the tested insects were allowed to move on their own from a lightproof plastic container onto the lighted arena. Young hibernated adults of P. proximus were offered four variants of odor: fir log segments infested with (1) 10 males, (2) 10 females, (3) 10 couples of P. proximus, and (4) clean air as the control. The pheromone of P. proximus was shown to be produced by females; a similar response of both sexes characterized it as an aggregation pheromone. All the three variants with infested fir logs were much more attractive than the control variant with clean air. Volatiles from fir tissues not only seem to serve as markers facilitating host selection by the first-to-arrive beetles before direct contact with the tree bark, but also to be used as pheromone precursors or synergists. The absence of difference in response to the logs infested with males and couples of the bark beetle indicated that pheromone synthesis was inhibited after couple formation.     

Effects of decay classes and diameter classes on physico-chemical properties of Pinus koraiensis log in a typical mixed broadleaved-Korean pine forest

AimsLog is an important component for most of forest ecosystems. It plays crucial roles in maintaining soil fertility, sustaining biodiversity and cycling of carbon (C) and nutrient. However, physico-chemical properties of logs vary with decay classes and diameter classes. Our objective was to study effects of decay classes and diameter classes on physico-chemical properties of logs in a typical mixed broadleaved-Korean pine forest in northern China.MethodsIn this study, logs of Pinus koraiensis were chosen as it was the constructive species in the typical mixed broadleaved-Korean pine forest. Logs of P. koraiensis at each decay classes (I-V) were divided into four diameter classes, including diameter class i ≤ 10.0 cm, diameter class ii: 10.1-30.0 cm, diameter class iii: 30.1-50.0 cm, and diameter class iv > 50.0 cm. Then, we explored effects of different decay classes, diameter classes and their interactions on the physico-chemical properties of logs for both the heartwood and sapwood.Important findings The results showed that the physico-chemical properties of heartwood and sapwood generally exhibited similar variations. Their moisture content both increased with an increasing decay class, whereas wood density both decreased with an increased decay class and diameter class. The carbon concentrations of the sapwood showed a trend of gradual increasing during decomposition, and there was an accumulation in nitrogen (N) and phosphorus (P) concentrations of the heartwood and sapwood with an increased decay class, simultaneously. Only N and P concentrations of the heartwood increased and then decreased with an increasing diameter class. The cellulose content decreased with an increasing decay class. In contrast to the cellulose, the lignin content increased with an increased decay class. However, cellulose and lignin contents exhibited no distinct trend among diameter classes. The moisture content of logs had a significant positive correlation with C, N, P concentrations and lignin content (except P concentrations of the heartwood), but had a significant negative correlation with the cellulose content (p< 0.05). The wood density was negatively correlated with C, N, P concentrations and the lignin content, but it was positively correlated with the cellulose content (p< 0.05). Therefore, physico-chemical properties of logs had unique patterns along both decay classes and diameter classes, and the physical properties of logs (the moisture content and wood density) were important factor affecting the variations of their chemical contents.     

腐烂等级、径级对典型阔叶红松林红松倒木物理化学性质的影响

倒木是森林生态系统的重要组成部分, 在地力维护、生物多样性保持以及碳(C)和养分循环等方面具有重要意义, 但倒木物理化学性质随其腐烂等级和径级而变化。为了深入理解腐烂等级和径级对倒木物理化学性质的影响, 该研究以典型阔叶红松林的建群种——红松(Pinus koraiensis)的倒木为研究对象, 将其每个腐烂等级(I-V)下的倒木分为4个径级(径级i ≤ 10.0 cm、径级ii 10.1-30.0 cm、径级iii 30.1-50.0 cm、径级iv >50.0 cm), 研究了不同腐烂等级、径级及两者交互作用对倒木心材和边材物理化学性质的影响。结果表明: 心材和边材具有相似的变化规律。倒木心材和边材含水率随着腐烂等级增加而增加, 而木材密度随腐烂等级和径级的增加均呈下降趋势; 边材C含量以及心材和边材的氮(N)、磷(P)含量随腐烂等级增加呈上升趋势, 心材N、P含量随径级增加呈先增加后减少的趋势; 纤维素含量随腐烂等级增加呈下降趋势, 而木质素含量呈上升趋势, 纤维素和木质素含量随径级增加没有明显变化规律。倒木含水率与C、N、P、木质素含量(除心材P含量)显著正相关, 与纤维素含量显著负相关; 木材密度与C、N、P、木质素含量显著负相关, 与纤维素含量显著正相关。由此可见, 倒木物理化学性质受不同腐烂等级和径级的影响有各自的变化规律, 且倒木的物理性质(含水率和木材密度)是影响化学含量变化的重要因素。     

The population of earthworms (Lumbricidae) in the main types of dark coniferous forests in Pechora-Ilych Nature Reserve

The population of earthworms has been studied in the main types of old-growth dark coniferous forests of Pechora-Ilych Nature Reserve (Komi Republic) that have not been subject to anthropogeniс impact for a long time. Ten species of earthworms have been identified. The greatest diversity (7 species), abundance, and biomass of earthworms has been revealed in the tall-grass fir–spruce forests. P. diplotetratheca had the greatest abundance. E. nordenskioldi nordenskioldi and E. atlavinyteae had the greatest biomass. The lowest species diversity (3 species), abundance, and biomass of earthworms have been found in the largefern, blueberry–green moss, and sphagnum–horsetail fir–spruce forests. The role of deadwood in maintaining the species diversity of Lumbricidae in dark coniferous forests has been demonstrated. The complexes of Lumbricidae have been considered in anthropogenically disturbed territories, where the following species with a habitat range to the south of the northern and middle taiga have been identified: L. rubellus, A. rosea, A. caliginosa caliginosa, and E. fetida.     

The stability of the pheromones of xylophagous insects to environmental factors: An evaluation by quantum chemical analysis

The ground and excited states of the pheromone molecules produced by xylophagous insects (the bark beetle Ips typographus L., the black fir sawyer beetle Monochamus urussovi Fisch., and the black pine sawyer M. galloprovincialis Oliv.) were modeled using a quantum chemical method utilizing DFT (density functional theory) with the B3LYP functional. The absorption wavelengths (energies) and dipole moments were calculated; the transitions of electrons from occupied to empty molecular orbitals were considered. The computed data were used to assess the stability of pheromone molecules exposed to environmental factors, such as solar radiation and humidity.     

Does tree species composition affect soil CO<Subscript>2</Subscript> emission and soil organic carbon storage in plantations?

Key message

Mixed tree plantations are potential silvicultural systems to increase soil carbon storage through altering litter and root inputs and soil physiochemical properties.

Abstract

Afforestation and reforestation are major strategies for global climate change mitigation. Different tree species composition can induce diverse changes in soil CO₂ emission and soil carbon sequestration in tree plantation. This study employed three plantations of monoculture and mixed Pinus yunnanensis and Eucalyptus globulus to estimate the effect of tree species composition on soil CO₂ emission and soil organic carbon storage in subtropical China. We found that tree species composition had a significant effect on the soil CO₂ emission and soil organic carbon storage. Soil CO₂ emission was lower in the mixed plantation than in the P. yunnanensis plantation, whereas it was higher than in the E. globulus plantation. Differences in soil CO₂ emission among the three plantations were determined by leaf litterfall mass, fine root biomass, soil available nitrogen, pH, soil bulk density, and soil C:N ratio. Soil organic carbon storage was 34.5 and 23.2 % higher in the mixed plantation than in the P. yunnanensis and E. globulus plantations, respectively. Higher soil organic carbon stock in the mixed plantation was attributed to lower C/N ratio of leaf litter and soil, greater fine root biomass and soil organic carbon content, and lower soil CO₂ emission. We conclude that mixed tree plantation can enhance soil carbon sequestration, but can decrease or increase soil CO₂ emission through altering litter and root inputs and soil physiochemical properties.

     

Microbial community and associated enzymes activity influence soil carbon chemical composition in <Emphasis Type="Italic">Eucalyptus urophylla</Emphasis> plantation with mixing N<Subscript>2</Subscript>-fixing species in subtropical China

Background and aims

Microbial communities and their associated enzyme activities affect the quantity and chemical quality of carbon in soil. We aimed to evaluate the biochemical mechanisms underlying how N₂-fixing species influences soil organic carbon chemical composition through soil microbial functional groups and enzyme activities.

Methods

We examined the effects of N₂-fixing species mixed with Eucalyptus on soil carbon storage, and the chemical composition of an 8-year-old pure Eucalyptus urophylla plantation (PP) and a mixed E.urophylla and Acacia mangium plantation (MP).

Results

The soil carbon stock and recalcitrant carbon chemical component significantly increased in surface soil in MP. The total PLFAs and bacterial PLFAs increased by 29.1% and 27.0% in cool-dry season, while in the warm-wet season, the total PLFAs and bacterial PLFAs increased by 13.1% and 27.3%, respectively. However, the fungal PLFAs decreased significantly in warm-wet season in MP. The total activity of the cellulose-degrading enzyme β-glucosidase was significantly greater with mixed N₂-fixing species in both dry-cool and wet-warm season. The increase in the Alk-C/O-Alk-C ratio and SOC was strongly associated with both C-acquisition activity and bacterial community.

Conclusions

Our findings highlight the importance of N₂-fixing species in regulating both soil microbial communities and their functioning in association with soil extracellular enzyme activities, which contribute to the increased soil carbon storage and recalcitrant carbon composition in Eucalyptus plantations.

     

Soil–litter mixing and microbial activity mediate decomposition and soil aggregate formation in a sandy shrub-invaded Chihuahuan Desert grassland

Drylands account globally for 30% of terrestrial net primary production and 20% of soil organic carbon. Present ecosystem models under predict litter decay in drylands, limiting assessments of biogeochemical cycling at multiple scales. Overlooked decomposition drivers, such as soil–litter mixing (SLM), may account for part of this model-measurement disconnect. We documented SLM and decomposition in relation to the formation of soil-microbial films and microbial extracellular enzyme activity (EEA) in the North American Chihuahuan Desert by placing mesh bags containing shrub (Prosopis glandulosa) foliar litter on the soil surface within contrasting vegetation microsites. Mass loss (in terms of k, the decay constant) was best described by the degree of SLM and soil-microbial film cover. EEA was greatest during periods of rapid litter decomposition and associated SLM. Soil-microbial film cover on litter surfaces increased over time and was greater in bare ground microsites (50% litter surface area covered) compared to shrub and grass microsites (37 and 33% covered, respectively). Soil aggregates that formed in association with decomposing leaf material had organic C and N concentrations 1.5–2× that of local surface soils. Micrographs of soil aggregates revealed a strong biotic component in their structure, suggesting that microbial decomposition facilitates aggregate formation and their C and N content. Decomposition drivers in arid lands fall into two major categories, abiotic and biotic, and it is challenging to ascertain their relative importance. The temporal synchrony between surface litter mass loss, EEA, biotic film development, and aggregate formation observed in this study supports the hypothesis that SLM enhances decomposition on detached litter by promoting conditions favorable for microbial processes. Inclusion of interactions between SLM and biological drivers will improve the ability of ecosystem models to predict decomposition rates and dynamics in drylands.     

A novel thermostable and organic solvent-tolerant lipase from <Emphasis Type="Italic">Xanthomonas oryzae</Emphasis> pv. <Emphasis Type="Italic">oryzae</Emphasis> YB103: screening,purification and characterization

Thermostable lipases offer major biotechnological advantages over mesophilic lipases. In this study, an intracellular thermostable and organic solvent-tolerant lipase-producing strain YB103 was isolated from soil samples and identified taxonomically as Xanthomonas oryzae pv. oryzae. The lipase from X. oryzae pv. oryzae YB103 (LipXO) was purified 101.1-fold to homogeneity with a specific activity of 373.9 U/mg. The purified lipase showed excellent thermostability, exhibiting 51.1 % of its residual activity after incubation for 3 days at 70 °C. The enzyme showed optimal activity at 70 °C, suggesting it is a thermostable lipase. LipXO retained 75.1–154.1 % of its original activity after incubation in 20 % (v/v) hydrophobic organic solvents at 70 °C for 24 h. Furthermore, LipXO displayed excellent stereoselectivity (e.e._p >99 %) toward (S)-1-phenethyl alcohol in n-hexane. These unique properties of LipXO make it promising as a biocatalyst for industrial processes.     

Effects of progressive drought stress on the physiology,antioxidative enzymes and secondary metabolites of Radix Astragali

The dried roots of Radix Astragali are widely used in traditional Chinese medicine, and flavonoids present in the root of this herb have been implicated in its bioactivity. We subjected 2-year-old Astragalus membranaceus Bge. var. mongholicus (Bge.) Hsiao to a progressive drought stress over 14 days of water withholding and studied the physiological and biochemical responses and secondary metabolite accumulation. Results indicated that drought stress reduced relative water content, reduced yield, but increased electrolyte leakage, malondialdehyde, proline and soluble sugar content. Mild and moderate drought stress enhanced some antioxidative enzyme activity to protect plants from damaging, but antioxidative enzyme activity was limited by severe stress. The calycosin-7-O-β-d-glycoside and ononin content of plant roots was enhanced with degree of drought stress, whereas calycosin and formononetin levels did not differ significantly until 14 days. These results demonstrate that Radix Astragali can adapt to water stress by up-regulating antioxidant enzymes and accumulation of osmotic agents, and a certain degree of drought stress can enhance accumulation of some flavonoids, potentially facilitating higher yields of pharmacological activity of calycosin-7-O-β-d-glycoside production.     

Vertical distribution of saproxylic beetles within snag trunks retained in plantation forests

Retention of snags (standing dead trees) is considered to have important effects on saproxylic species conservation in plantation forests because snags would provide vertically stratified deadwood habitats. However, the vertical distribution of saproxylic insects within snag trunks is still unclear. We felled 33 naturally occurring snags of Todo fir Abies sachalinensis in plantation forests and extracted insects from 99 logs sampled from three vertical positions of the snag trunks (basal stem: <2.5 m, lower trunk: 2.5–5 m and upper trunk: >5 m). The mean number of species that emerged from a single log was only 2.69, but we identified 51 morphospecies of saproxylic beetles in total. The total number of species that emerged from the basal stem (34 spp.) was greater than those that emerged from the lower trunk (25 spp.) or the upper trunk (30 spp.). However, rarefaction-extrapolation analysis did not demonstrate a significant difference in species richness among the log positions. Beetle assemblages were separated into two groups by constrained correspondence analysis; one group emerged only from lower and upper trunk logs, while another emerged mainly from basal stem logs. Additionally, vertical position had a significant effect on the distribution of the five main species. Our results show that beetle assemblages within snags in the plantation forests were highly variable, and retaining a sufficient number of high stumps may be important for saproxylic beetle conservation in plantation forests. We propose ‘retention thinning’ as an appropriate method to combine efficient timber production with biodiversity conservation in plantation forests.     

Grass vs. tree origin of soil organic carbon under different land-use systems in the Brazilian Cerrado

Aims

This study aimed at assessing whether patch type (i.e., under-shrub soil patch and inter-shrub soil patch) has an effect on soil microbes and how different shrub species altered the soil microbes through understanding soil microbial activity, biomass, and community structure.

Methods

We characterized the soil microbes in under-shrub and inter-shrub soil patches in three shrublands (Artemisia ordosica, Salix psammophila, and Caragana microphylla), respectively, in the Mu Us Desert, China, using microbial activity indicators, chloroform fumigation-extraction analysis, and high-throughput 16S rRNA gene sequencing.

Results

Members of the phyla Proteobacteria, Actinobacteria, Acidobacteria, Planctomycetes, Bacteroidetes, Chloroflexi, Firmicutes, and Gemmatimonadetes were dominant. Inter-shrub soil patch differed from under-shrub soil patch in soil bacterial composition, microbial enzyme activity, and biomass, but not in diversity. Soil collected in A. ordosica shrubland exhibited the highest microbial enzyme activity, biomass, and diversity. Shrub species had significant effects on community structure, primarily the relative abundance of Proteobacteria, Actinobacteria, and Bacteroidetes.

Conclusions

The results indicated that both shrub species and patch type had effects on soil microbial communities. In shrub-dominated desert ecosystems, spatial heterogeneity of soil nutrients and moisture might not be the main factors underlying variations in bacterial diversity. The different compositions of microbial communities in various shrublands provide a foundation for further research into the mechanisms of soil organic carbon accumulation.

     

Interactive effects of wood decomposer fungal activities and bryophytes on spruce seedling regeneration on coarse woody debris

Decaying logs are important seedbeds in boreal and subalpine forests. However, biotic and abiotic factors and their interactions related to seedling colonization patterns on logs remain unclear. In the present study, we evaluated the influence of bryophyte communities, wood decay type (white-, brown-, and soft-rot) owing to decomposer fungal activities, and environmental abiotic factors on seedling establishment in an old-growth subalpine coniferous forest in Japan. Among the tree species recorded on the conifer logs, Picea jezoensis var. hondoensis was the most dominant. Log surfaces were covered with distinctive patches of liverwort Scapania bolanderi and moss Pleurozium schreberi (approximately 33% cover for each). Redundancy analysis showed that brown-rot in sapwood significantly affects the bryophyte and seedling community on the logs. Generalized linear models suggested that the total bryophyte cover, Scapania cover, and white-rot in heartwood positively associate with Picea seedling density, whereas Pleurozium cover and basal area of adjacent Picea adults negatively associate with Picea seedling density. Results of structural equation modeling suggested that the brown-rot of sapwood positively associates with Scapania cover that has a positive effect on Picea seedling density. Furthermore, brown-rot of sapwood inhibited the Pleurozium cover, thus contributing to the Scapania dominance on the logs. These results suggest that fungal wood decomposer activities affect colonization of Picea seedlings in an indirect way via structuring bryophyte community on the logs.     

Assessing the impacts of temperature and storage on <Emphasis Type="Italic">Escherichia coli</Emphasis>, <Emphasis Type="Italic">Salmonella</Emphasis>, and <Emphasis Type="Italic">L. monocytogenes</Emphasis> decay in dairy manure

Elevated levels of animal waste-borne pathogen in ambient water is a serious human health issue. Mitigating influx of pathogens from animal waste such as dairy manure to soil and water requires improving our existing knowledge of pathogen reductions in dairy manure treatment methods. This study was conducted to enhance the  understanding of human pathogen decay in liquid dairy manure in anaerobic (AN) and limited aerobic (LA) storage conditions. The decay of three pathogens (Escherichia coli, Salmonella spp., and Listeria monocytogenes) was assessed in bench-scale batch reactors fed with liquid slurry. A series of temperatures (30, 35, 42, and 50 °C) conditions were tested to determine the impacts of temperature on Escherichia coli, Salmonella, and L. monocytogenes decay in AN and LA conditions. Results showed prolonged survival of E. coli compared to Salmonella and L. monocytogenes in both LA and AN environments. Variations in survival among pathogens with temperature and environmental conditions (i.e., LA and AN) indicated the necessity of developing improved dairy manure waste treatment methods for controlling animal waste-borne pathogens. The results of this study will help in improving the current understanding of human pathogen decay in dairy manure for making informed decisions of animal manure treatment by stakeholders.