Where Next? Group Coordination and Collective Decision Making by Primates

Primate groups need to remain coordinated in their activities and collectively decide when and where to travel if they are to accrue the benefits and minimize the costs of sociality. The achievement of coordinated activity and group decision making therefore has important implications for individual survival and reproduction. The aim of this special issue is to bring together a collection of empirical, theoretical, and commentary articles by primatologists studying this rapidly expanding topic. In this article, we introduce the contributions within the special issue and provide a background to the topic. We begin by focusing on decisions that involve a collective transition between a resting and a moving state, a transition we term making the move. We examine whether specific predeparture behaviors seen during transitions represent intentional processes or more simple response facilitation. Next we classify decisions according to the contribution of individual group members, and describe how, and why, certain individuals can have a disproportionate influence over group-mates?? behavior. We then review how primate groups make decisions on the move. In particular, we focus on how variability in group size and spatial organization helps or hinders information transmission and coordination. We end with a discussion of new tools and methodology that will allow future investigators to address some outstanding questions in primate coordination and decision-making research. We conclude that a better integration of concepts and terminology, along with a focus on how individuals integrate environmental and social information, will be critical to developing a satisfactory understanding of collective patterns of behavior in primate systems.     

Prevention of type 2 diabetes--lessons we have learnt for implementation.

The challenge today is to implement successful diabetes prevention programs in general health care. Even if not all questions for the prevention of diabetes are answered, we have today overwhelming evidence that diabetes can be prevented or delayed in high risk population through lifestyle modification or pharmacological interventions. This information has to be translated now into well-defined strategies for screening and treating high risk population in daily practice. It is necessary then to develop and implement prevention programs into clinical practice considering scientific aspects and practical requirements during implementation. While translating the scientific evidence into population based intervention strategies more and more questions arise, mostly related to economic and structural requirements during implementation. At the end, giving the right answers to these questions will decide about the success of implemented prevention strategies. Here, we will try to answer some of the questions which arose during the implementation of a prevention management concept into clinical practice. We focus on the development of a structured prevention management program which will enable implementation of diabetes prevention into clinical practice.     

Computers: the best friends a human genome ever had

Mapping and sequencing the human genome will generate large amounts of data, which must be sorted, analyzed, and stored for rapid retrieval to complete this enormous task. Computers and their software programs provide the most important tool to the molecular biologist today. A discussion of current capabilities and future needs in computer hardware and software for the human genome project is the topic of this paper. The use of computer programs to generate restriction maps, manage clone libraries, manage sequence projects, and generate consensus sequences is presented. The use of computers to communicate useful information rapidly to scientific colleagues is also mentioned. The role of both GenBank and BIONET is central to the dissemination and analysis of sequence information. The capabilities of electronic communication worldwide for assisting this project is available on the BIONET National Computer Resource, using existing networks.     

DSLINK: a computer program for gene-centromere linkage analysis in families with a trisomic offspring.

Trisomic individuals provide information for gene-centromere mapping, since two of the four chromatids in a meiotic tetrad can be recovered. When centromeric markers are available, linkage analysis between the centromere and any marker locus can be performed in nuclear families having one or more trisomic offspring. Since conventional linkage programs consider only disomic individuals, we have written a FORTRAN computer program, DSLINK, that performs gene-centromere linkage analysis on the basis of information on trisomic and disomic offspring. This program makes it possible to study the relationship between recombination and chromosome segregation.     

Comprehensive restriction enzyme lists to update any DNA sequence computer program

Restriction enzyme lists are presented for the practical working geneticist to update any DNA computer program. These lists combine formerly scattered information and contain all presently known restriction enzymes with a unique recognition sequence, a cut site, or methylation (in)sensitivity. The lists are in the shortest possible form to also be functional with small DNA computer programs, and will produce clear restriction maps without any redundancy or loss of information. The lists discern between commercial and noncommercial enzymes, and prototype enzymes and different isoschizomers are cross-referenced. Differences in general methylation sensitivities and (in)sensitivities against Dam and Dcm methylases of Escherichia coli are indicated. Commercial methylases and intron-encoded endonucleases are included. An address list is presented to contact commercial suppliers. The lists are constantly updated and available in electronic form as pure US ASCII files, and in formats for the DNA computer programs DNA-Strider for Apple Macintosh, and DNAsis for IBM personal computers or compatibles via e-mail from the internet address: netservembl-heidelberg.de by sending only the message help relibrary.     

7th international workshop on the CCN family of genes: Nice to be in nice

In this Editorial, I would like to provide our readers with a brief mid-year update about our activities and efforts to bring together researchers working on intercellular signaling proteins at international meetings. The roots emerged about 20 years ago in the discovery of three genes originally designated cyr61, ctgf, and nov. The proteins encoded by these genes were first proposed to constitute a family of proteins (CCN) which now comprises 6 members (CCN1, CCN2, CCN3, CCN4-6) including the wisp proteins. These proteins were recognized to share a striking structural organization and a high degree of identity although they exhibited quite distinct biological properties. After historical considerations regarding the reasons for using the CCN acronym, and how the ICCNS publishing landscape that drove the ICCNS from Cell Communication and Signaling to the Journal of Cell Communication and Signaling, this short update will focus on the 7th edition of the International Workshop on the CCN family of genes to be held in Nice, Oct 16–19, 2013.     

Software Review of Distribution Fitting Programs: Crystal Ball and BestFit Add-In to @RISK

Simulation software programs continue to evolve and to meet the needs of risk analysts. In the past several years, two spreadsheet add-in programs added the capability of fitting distributions to data to their tool kits using classical statistical (i.e., non-Bayesian) methods. Crystal Ball version 4.0 now contains this capability in its standard program (and in Crystal Ball Pro version 4.0), while the BestFit software program is a component of the @RISK Decision Tools Suite that can also be purchased as a stand-alone program. Both programs will automatically fit distributions using maximum likelihood estimators to continuous data and provide goodness-of-fit statistics based on chi-squared, Kolmogorov-Smirnov, and Anderson-Darling tests. BestFit will also fit discrete distributions, and for all distributions it offers the option of optimizing the fit based on the goodness-of-fit parameters. Analysts should be wary of placing too much emphasis on the goodness-of-fit statistics given their limitations, and the fact that only some of the statistics are appropriately corrected to account for the fact that the distribution parameters are also fit using the data. These programs dramatically simplify efforts to use maximum likelihood estimation to fit distributions. However, the fact that a program is used to fit distributions should not be viewed as validation that the data have been fitted and interpreted correctly. Both programs rely heavily on the analyst's judgment and will allow analysts to fit inappropriate distributions. Currently, both programs could be improved by adding the ability to perform extensive basic exploratory data analysis and to give regression diagnostics that are needed to satisfy critical analysts or reviewers. Given that Bayesian methods are central to risk analysis, adding the capability of fitting distributions by combining data with prior information would greatly increase the utility of these programs.     

CCN5, a secreted protein,localizes to the nucleus

CCN5, a member of the CCN family of growth factors, inhibits the proliferation and migration of smooth muscle cells in cell culture and animal models. Expressed in both embryonic and adult tissues, CCN5 exhibits a matricellular localization pattern characteristic of secreted proteins that are closely associated with the cell surface. In addition to this observed expression pattern, immunohistochemical evidence suggests the presence of nuclear CCN5 in some cells. To determine if CCN5 localizes to the nucleus we performed immunofluorescence, confocal imaging, and cell fractionation to corroborate the immunohistochemical observations. After confirming the presence of nuclear CCN5 using four independent experimental methods, we identified a single putative nuclear localization signal in the von Willebrand factor C domain of mouse and rat CCN5. Site directed mutagenesis of the three basic amino acids in the putative nuclear localization sequence did not prevent nuclear localization of CCN5 in four different cell types, suggesting that CCN5 nuclear transport is not mediated by the only canonical nuclear localization signal present in the primary amino acid sequence. Future work will address the mechanism of nuclear localization and the function of nuclear versus secreted CCN5.     

Calculation of the solution properties of flexible macromolecules: methods and applications

While the prediction of hydrodynamic properties of rigid particles is nowadays feasible using simple and efficient computer programs, the calculation of such properties and, in general, the dynamic behavior of flexible macromolecules has not reached a similar situation. Although the theories are available, usually the computational work is done using solutions specific for each problem. We intend to develop computer programs that would greatly facilitate the task of predicting solution behavior of flexible macromolecules. In this paper, we first present an overview of the two approaches that are most practical: the Monte Carlo rigid-body treatment, and the Brownian dynamics simulation technique. The Monte Carlo procedure is based on the calculation of properties for instantaneous conformations of the macromolecule that are regarded as if they were instantaneously rigid. We describe how a Monte Carlo program can be interfaced to the programs in the HYDRO suite for rigid particles, and provide an example of such calculation, for a hypothetical particle: a protein with two domains connected by a flexible linker. We also describe briefly the essentials of Brownian dynamics, and propose a general mechanical model that includes several kinds of intramolecular interactions, such as bending, internal rotation, excluded volume effects, etc. We provide an example of the application of this methodology to the dynamics of a semiflexible, wormlike DNA.     

PHYLOGENETIC ANALYSES OF THE CORRELATED EVOLUTION OF CONTINUOUS CHARACTERS: A SIMULATION STUDY

We use computer simulation to compare the statistical properties of several methods that have been proposed for estimating the evolutionary correlation between two continuous traits, and define alternative evolutionary correlations that may be of interest. We focus on Felsenstein's (1985) method and some variations of it and on several “minimum evolution” methods (of which the procedure of Huey and Bennett [1987] is a special case), as compared with a nonphylogenetic correlation. The last, a simple correlation of trait values across the tips of a phylogeny, virtually always yields inflated Type I error rates, relatively low power, and relatively poor estimates of evolutionary correlations. We therefore cannot recommend its use. In contrast, Felsenstein's (1985) method yields acceptable significance tests, high power, and good estimates of what we term the input correlation and the standardized realized evolutionary correlation, given complete phylogenetic information and knowledge of the rate and mode of character change (e.g., gradual and proportional to time [“Brownian motion”] or punctuational, with change only at speciation events). Inaccurate branch length information may affect any method adversely, but only rarely does it cause Felsenstein's (1985) method to perform worse than do the others tested. Other proposed methods generally yield inflated Type I error rates and have lower power. However, certain minimum evolution methods (although not the specific procedure used by Huey and Bennett [1987]) often provide more accurate estimates of what we term the unstandardized realized evolutionary correlation, and their use is recommended when estimation of this correlation is desired. We also demonstrate how correct Type I error rates can be obtained for any method by reference to an empirical null distribution derived from computer simulations, and provide practical suggestions on choosing an analytical method, based both on the evolutionary correlation of interest and on the availability of branch lengths and knowledge of the model of evolutionary change appropriate for the characters being analyzed. Computer programs that implement the various methods and that will simulate (correlated) character evolution along a known phylogeny are available from the authors on request. These programs can be used to test the effectiveness of any new methods that might be proposed, and to check the generality of our conclusions with regard to other phylogenies.     

A review on the spot-billed pelican Pelecanus philippensis literature

Literature on spot-billed pelican has not been reviewed lately which could provide a critique of the emerging data. We have now chosen it as a key species through which we suggest a conservation action plan which will benefit several waterbird species. The information provided here is scholastic in nature and is meant to focus on aspects that require attention and help plan future work for applied conservation. All known information on this species is brought together in this review which will also provide an update of its biology. Notes on the breeding biology of the species first published in the Journal of the Bombay Natural History Society. So far, 380 works have appeared on the species; of these, 36 contain material reported in earlier works or appeared as papers subsequently. Most appeared as articles in journals, both national and regional, a few international journals, newsletters/bulletins (48.2%), 4 dissertations, 76 reports and 6 popular science articles in magazines. This review on the species will provide an insight into different factors that can be weighed and combined while making a decision in investing resources in species conservation, i.e. importance of the species, level of threat and the time frame over which results are to be achieved.     

Challenges of the medical entomology for the surveillance in public health in Colombia: reflections on the state of malaria

The relevance of the medical entomology was considered with respect to current framework of malaria control programs in Colombia. A responsibility is indicated for balancing control efforts along with providing information on the malaria vectors. This knowledge must be acquired in order to focus the related activities that are required. The malaria control program must be based on results of local entomological surveillance, and the data must be in a form to give practical answers to questions regarding the control program. Difficulties in undertaking the required studies are described, particularly regarding the taxonomic identification of Colombian Anopheles in Colombia and which of these can be incriminated as malaria vectors.     

Intellectual property law: a primer for scientists

“Intellectual property” (IP) is a generic legal term for patents, copyrights, and trademarks, which provide legal rights to protect ideas, the expression of ideas, and the inventors and creators of such ideas. A patent provides legal protection for a new invention, an application of a new idea, discovery, or concept that is useful. Copyright provides legal protection from copying for any creative work, as well as business and scientific publications, computer software, and compilations of information. A trademark provides rights to use symbols, particular words, logos, or other markings that indicate the source of a product or service. A further method of benefiting from an invention is simply to keep it secret, rather than to disclose it—a “trade secret.” IP impinges on almost everything scientists do. As scientists are paid to come up with ideas and aspire to patent and/or publish their work, the protection of ideas and of written works especially should be of interest and concern to all.     

A fast approach to identify trending articles in hot topics from XML based big bibliographic datasets

Nowadays XML based big bibliographic datasets are common in different domains which provide meta data about articles published in that domain. They have well defined tags which give details of the year, title, authors, abstract, keywords, the type of article, the venue of publishing the article and other such specific details about each article. A lot of statistics can be extracted from this dataset. Most of the time the tag pertaining to domain sub topic information associated with the article will be absent in the dataset as it is not an article attribute. Hence for such statistics articles must be mapped to its associated sub domain. This paper investigates this problem and proposes a fast approach to find trending articles and hot topics from XML based big bibliographic datasets. The proposed framework uses domain ontology to first classify articles into its sub topics. Fast detection of hot topics, trending keywords and articles is achieved using novel Map Reduce algorithms implemented on a hadoop distributed framework. Performance comparison demonstrates that it outperforms its non-Map Reduce counterpart in quickly sorting out the trending keywords and titles in a particular hot topic from XML based bibliographic dataset.     

Viral biocontrol of invasive vertebrates: Lessons from the past applied to cyprinid herpesvirus-3 and carp (Cyprinus carpio) control in Australia

This paper reviews successful and, briefly, unsuccessful viral biocontrol programs for invasive vertebrate pests to provide lessons for future programs, especially the potential use of cyprinid herpesvirus-3 to control carp in Australia. There have only been three major programs where viral pathogens have been used successfully against invasive vertebrate pests. Myxoma and rabbit hemorrhagic disease viruses were used to control rabbits in Australia, and feline panleukopenia virus helped eliminate cats from sub-Antarctic Marion Island. These programs have shown us that successful viral biocontrol programs for invasive species must include: a thorough understanding of the biology of the target species, and of the viral epidemiology; an integrated pest management program involving both the virus and other control methods; and, a post-release assessment of the ecological benefits of the program. The most important practical lessons identified in this review are: the greatest impact of viruses as biocontrol agents is in the first years following release; unsuspected cross-reactive viruses may confer protection on the target species; and, there may be age- or temperature-related resistance to the virus in the target species.     

Cost considerations for long-term ecological monitoring

For an ecological monitoring program to be successful over the long-term, the perceived benefits of the information must justify the cost. Financial limitations will always restrict the scope of a monitoring program, hence the program’s focus must be carefully prioritized. Clearly identifying the costs and benefits of a program will assist in this prioritization process, but this is easier said than done. Frequently, the true costs of monitoring are not recognized and are, therefore, underestimated. Benefits are rarely evaluated, because they are difficult to quantify. The intent of this review is to assist the designers and managers of long-term ecological monitoring programs by providing a general framework for building and operating a cost-effective program. Previous considerations of monitoring costs have focused on sampling design optimization. We present cost considerations of monitoring in a broader context. We explore monitoring costs, including both budgetary costs, what dollars are spent on, and economic costs, which include opportunity costs. Often, the largest portion of a monitoring program budget is spent on data collection, and other, critical aspects of the program, such as scientific oversight, training, data management, quality assurance, and reporting, are neglected. Recognizing and budgeting for all program costs is therefore a key factor in a program’s longevity. The close relationship between statistical issues and cost is discussed, highlighting the importance of sampling design, replication and power, and comparing the costs of alternative designs through pilot studies and simulation modeling. A monitoring program development process that includes explicit checkpoints for considering costs is presented. The first checkpoint occurs during the setting of objectives and during sampling design optimization. The last checkpoint occurs once the basic shape of the program is known, and the costs and benefits, or alternatively the cost-effectiveness, of each program element can be evaluated. Moving into the implementation phase without careful evaluation of costs and benefits is risky because if costs are later found to exceed benefits, the program will fail. The costs of development, which can be quite high, will have been largely wasted. Realistic expectations of costs and benefits will help ensure that monitoring programs survive the early, turbulent stages of development and the challenges posed by fluctuating budgets during implementation.     

Messenger RNA electroporation: an efficient tool in immunotherapy and stem cell research

Over the last decades medicine has developed tremendously, but still many diseases are incurable. The last years, cellular (gene) therapy has become a hot topic in biomedical research for the potential treatment of cancer, AIDS and diseases involving cell loss or degeneration. Here, we will focus on two major areas within cellular therapy, cellular immunotherapy and stem cell therapy, that could benefit from the introduction of neo-expressed genes through mRNA electroporation for basic research as well as for clinical applications. For cellular immunotherapy, we will provide a state-of-the-art on loading antigen-presenting cells with antigens in the mRNA format for manipulation of T cell immunity. In the area of stem cell research, we will highlight current gene transfer methods into adult and embryonic stem cells and discuss the use of mRNA electroporation for controlling guided differentiation of stem cells into specialized cell lineages.     

Are zinc-bound metallothionein isoforms (I+II and III) involved in impaired thymulin production and thymic involution during ageing?

In the elderly, many alterations of both innate and clonotypic immunity have been described. Alterations to the immune system in the elderly are generally viewed as a deterioration of immunity, leading to the use of the term immunosenescence. However, although many immunological parameters are often notably reduced in the elderly, retained function of both innate and clonotypic immunity in the elderly is tightly correlated to health status. Recognising the important role of the immune system in ageing, over the last few years, journals oriented towards gerontology and geriatric sciences have increasingly published articles dealing with the immunology of ageing, but a specialised journal in this area does not exist. Immunity & Ageing is a new Open Access, peer reviewed journal that aims to cover all the topics dealing with innate and clonotypic immunity which are relevant to ageing. The journal will provide an opportunity to focus on this topic, which is emerging as one of the critical mechanisms of ageing. Furthermore, as an online, Open Access journal, Immunity & Ageing will promote immediate accessibility to research, which is generally not possible for articles published in printed journals. We hope this forum, concentrating on the themes of ageing and immunology with a strong focus on human studies, will create a new perspective for viewing a world that is inevitably becoming older.