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1.
Release rates of recently fixed $ {\text{NH}}^{{\text{ + }}}_{{\text{4}}} $ from non-exchangeable interlayer sites in 2:1 silicate minerals were determined for decomposed granite (DG) saprolites from three locations in California, USA. Recently-fixed $ {\text{NH}}^{{\text{ + }}}_{{\text{4}}} $ release from the DG substrate was quantified by extracting diffused $ {\text{NH}}^{{\text{ + }}}_{{\text{4}}} $ with H-resin, as well as a native, annual grass Vulpia microstachys. The $ {\text{NH}}^{{\text{ + }}}_{{\text{4}}} $ release data varied with via the method of extraction, which included H-resin pre-treatments (Na+ or H+) and V. microstachys uptake (mycorrhizal inoculated or uninoculated). After 6 weeks (1008 h), more $ {\text{NH}}^{{\text{ + }}}_{{\text{4}}} $ was recovered from fixed interlayer positions by the H-resins as compared to uptake by V. microstachys. The H+ treated H-resins recovered more released $ {\text{NH}}^{{\text{ + }}}_{{\text{4}}} $ (≈94 mg ${\text{NH}}^{{\text{ + }}}_{{\text{4}}} - {\text{N}}\;{\text{kg}}^{1} $ or (12%) of total fixed $ {\text{NH}}^{{\text{ + }}}_{{\text{4}}} $ ) in two of the three DG samples as compared to the Na+ treated resins, (which recovered ≈70–78 mg ${\text{NH}}^{{\text{ + }}}_{{\text{4}}} - {\text{N}}\;{\text{kg}}^{{{\text{ - 1}}}} $ (or 9–10%) of the total fixed $ {\text{NH}}^{{\text{ + }}}_{{\text{4}}} $ ). The V. microstachys assimilated 8–9% of the total fixed $ {\text{NH}}^{{\text{ + }}}_{{\text{4}}} $ with mycorrhizal inoculum as compared to only 2% without a mycorrhizal inoculum, over the same time period. The fixed $ {\text{NH}}^{{\text{ + }}}_{{\text{4}}} $ release kinetics from the H-resin experiments were most accurately described by first order and power function models, and can be characterized as biphasic using a heterogeneous diffusion model. Uptake of both the 15N and ambient, unlabelled N from the soils was closely related to plant biomass. There was no significant difference in percent of N per unit of biomass between the control and mycorrhizal treatments. The findings presented here indicate that observed, long-term $ {\text{NH}}^{{\text{ + }}}_{{\text{4}}} $ release rates from DG in studies utilizing resins, may overestimate the levels of fixed $ {\text{NH}}^{{\text{ + }}}_{{\text{4}}} $ made available to plants and microorganisms. Additionally, the study suggested that mycorrhizae facilitate the acquisition and plant uptake of fixed $ {\text{NH}}^{{\text{ + }}}_{{\text{4}}} $ , resulting in markedly increased plant biomass production. 相似文献
2.
A simple method using the O2 electrode that allows examination of the response of respiration and photosynthesis in leaf slices or algae to anoxia and high light under different temperatures useful for the examination of the interactions among photosynthesis, photorespiration, and respiration is described. The method provides a quantifiable assessment of stress tolerance that also permits us to examine fundamental biochemically and genetically related responses involved in stress tolerance and the cooperation among organelles. Additionally, we demonstrated a role for compounds, such as $ {\text{NO}}^{{\text{ - }}}_{{\text{3}}} $ and oxaloacetate, as protective agents against photoinhibition, and we examined the role of dark adaptation in the activation of photosynthesis and $ {\text{NO}}^{{\text{ - }}}_{{\text{3}}} $ -dependent O2 oxygen evolution. A physiological and ecological role of a dark period (night) in stress tolerance is presented. Utilizing the method to follow changes in such metabolic activities as protein synthesis, protein conformation states, enzymes activity, carbon metabolism, and gene expression at different points during the treatments will be educational. 相似文献
3.
Jane S. Murray Zenaida Peralta-Inga Shields Pat Lane Laura Macaveiu Felipe A. Bulat 《Journal of molecular modeling》2013,19(7):2825-2833
In a continuing effort to further explore the use of the average local ionization energy $ \overline{\mathrm{I}}\left( \mathbf{r} \right) $ as a computational tool, we have investigated how well $ \overline{\mathrm{I}}\left( \mathbf{r} \right) $ computed on molecular surfaces serves as a predictive tool for identifying the sites of the more reactive electrons in several nonplanar defect-containing model graphene systems, each containing one or more pentagons. They include corannulene (C20H10), two inverse Stone-Thrower-Wales defect-containing structures C26H12 and C42H16, and a nanotube cap model C22H6, whose end is formed by three fused pentagons. Coronene (C24H12) has been included as a reference planar defect-free graphene model. We have optimized the structures of these systems as well as several monohydrogenated derivatives at the B3PW91/6-31G* level, and have computed their $ \overline{\mathrm{I}}\left( \mathbf{r} \right) $ on molecular surfaces corresponding to the 0.001 au, 0.003 au and 0.005 au contours of the electronic density. We find that (1) the convex sides of the interior carbons of the nonplanar models are more reactive than the concave sides, and (2) the magnitudes of the lowest $ \overline{\mathrm{I}}\left( \mathbf{r} \right) $ surface minima (the $ {{\overline{\mathrm{I}}}_{{\mathrm{S}\text{,}\min }}} $ ) correlate well with the interaction energies for hydrogenation at these sites. These $ {{\overline{\mathrm{I}}}_{{\mathrm{S}\text{,}\min }}} $ values decrease in magnitude as the nonplanarity of the site increases, consistent with earlier studies. A practical benefit of the use of $ \overline{\mathrm{I}}\left( \mathbf{r} \right) $ is that a single calculation suffices to characterize the numerous sites on a large molecular system, such as graphene and defect-containing graphene models. Figure
Convex 0.001 au molecular surface of hydrogenated inverse Stone-Thrower-Wales defect-containing model 4H, with the hydrogen attached to one of the central carbons fusing the two pentagons 相似文献
4.
Sara Tiburtius Susanne Schrof Ferenc Molnár Peter Varga Françoise Peyrin Quentin Grimal Kay Raum Alf Gerisch 《Biomechanics and modeling in mechanobiology》2014,13(5):1003-1023
The key parameters influencing the elastic properties of the mineralized turkey leg tendon (MTLT) were investigated. Two structurally different tissue types appearing in the MTLT were considered: circumferential and interstitial tissue. These differ in their amount of micropores and their average diameter of the mineralized collagen fibril bundles. A multiscale model representing the apparent elastic stiffness tensor of MTLT tissue was developed using the Mori–Tanaka and the self-consistent homogenization schemes. The volume fraction of mineral (hydroxyapatite) in the fibril bundle, \(\hbox {vf}_{{\text {ha}}}^{{\text {MCFB}}}\) , and the tissue microporosity are the variables of the model. The MTLT model was analyzed performing a global sensitivity analysis (Elementary Effects method) and a parametric study. The stiffnesses parallel (axial) and perpendicular (transverse) to the MTLT long axis were the only significantly sensitive components of the apparent stiffness tensor of MTLT tissue. The most important parameters influencing these apparent stiffnesses are \(\hbox {vf}_{{\text {ha}}}^{{\text {MCFB}}}\) , tissue microporosity, as well as shape and distribution of the minerals in the fibril bundle (intra- vs. interfibrillar). The predicted apparent stiffness was converted to acoustic impedance for model validation. From measurements on embedded MTLT samples, including 50- and 200-MHz scanning acoustic microscopy as well as synchrotron radiation micro-computed tomography, we obtained site-matched acoustic impedance and \(\hbox {vf}_{{\text {ha}}}^{{\text {MCFB}}}\) data of circumferential and interstitial tissue. The experimental and the model data compare very well for both tissue types (relative error 6–8 %). 相似文献
5.
It is hypothesized that metabolic and mechanical changes in human locomotion associated with changes in speed v are constrained by two attractive strategies: $Q_{{\text{metab}}} = 1{\text{ and }}\Delta Q_{{\text{metab}}} /\Delta v = {\text{a}}$ positive definite constant. $Q_{{\text{metab}}} = \Delta {\rm E}_{\text{k}} {\text{s}}^{{\text{ - 1}}} /{\text{ml O}}_{\text{2}} {\text{s}}^{{\text{ - 1}}} $ where ΔEs?1 is the summed increments and decrements per unit time in the translational and rotational kinetic energies of the body's segments and ml O2s?1 is the rate at which chemical energy is dissipated. The expected constancy of ΔQ metab/Δv metab was derived from an extension of Ehrenfest's adiabatic hypothesis by which transformations (increases, decreases) in locomotion v can be considered as adiabatic, even though the biological conditions are nonconservative and non-rate-limited. The expected significance of Q metab=1 was derived from stability considerations of the symmetry per stride of stored and dissipated energy. An experimental evaluation was provided by collecting metabolic and mechanical measures on walking (10 subjects) and running (9 subjects) at progressively greater treadmill speeds but within the aerobic limit. Results revealed that walking was restricted to ometab ? 1 with a nonlinear trajectory in v×Q metab coordinates shaped by Q metab=1 (primarily) and the constancy of ΔQ metab/Δv. Running satisfied Q metab > 1, with a linear trajectory in v×Q metab coordinates conforming to ΔQ metab/Δv=a constant, with the constant predicted from invariants in the mechanical space v×ΔE ks?1. Results also suggested that the metabolic costs of running might be predictable from measures made in the v×ΔE ks?1 space. 相似文献
6.
Osvaldo A. Martin Myriam E. Villegas Jorge A. Vila Harold A. Scheraga 《Journal of biomolecular NMR》2010,46(3):217-225
Cysteines possess a unique property among the 20 naturally occurring amino acids: it can be present in proteins in either the reduced or oxidized form, and can regulate the activity of some proteins. Consequently, to augment our previous treatment of the other types of residues, the $ {}^{13}{\text{C}}^{{{\upalpha}}} $ and $ {}^{13}{\text{C}}^{{{\upbeta}}} $ chemical shifts of 837 cysteines in disulfide-bonded cystine from a set of seven non-redundant proteins, determined by X-ray crystallography and NMR spectroscopy, were computed at the DFT level of theory. Our results indicate that the errors between observed and computed $ {}^{13}{\text{C}}^{{{\upalpha}}} $ chemical shifts of such oxidized cysteines can be attributed to several effects such as: (a) the quality of the NMR-determined models, as evaluated by the conformational-average (ca) rmsd value; (b) the existence of high B-factor or crystal-packing effects for the X-ray-determined structures; (c) the dynamics of the disulfide bonds in solution; and (d) the differences in the experimental conditions under which the observed $ {}^{13}{\text{C}}^{{{\upalpha}}} $ chemical shifts and the protein models were determined by either X-ray crystallography or NMR-spectroscopy. These quantum-chemical-based calculations indicate the existence of two, almost non-overlapped, basins for the oxidized and reduced ?SH $ {}^{13}{\text{C}}^{{{\upbeta}}} $ , but not for the $ {}^{13}{\text{C}}^{{{\upalpha}}} $ , chemical shifts, in good agreement with the observation of 375 $ {}^{13}{\text{C}}^{{{\upalpha}}} $ and 337 $ {}^{13}{\text{C}}^{{{\upbeta}}} $ resonances from 132 proteins by Sharma and Rajarathnam (2000). Overall, our results indicate that explicit consideration of the disulfide bonds is a necessary condition for an accurate prediction of $ {}^{13}{\text{C}}^{{{\upalpha}}} $ and $ {}^{13}{\text{C}}^{{{\upbeta}}} $ chemical shifts of cysteines in cystines. 相似文献
7.
de Magalhães Erismann N Caruso Machado E Sant' Anna Tucci ML 《Photosynthesis research》2008,96(2):163-172
Photosynthetic limitations under moderate water deficit were evaluated in ‘Valência’ orange trees grafted on three different
rootstocks, in pots. Net CO2 assimilation rate (A
N), stomatal conductance (g
s), and photosystem II (PS II) operating efficiency (
) in response to changing intercellular CO2 partial pressure (C
i) were analyzed under controlled conditions. Drought decreased A
N and g
s, whereas remained unchanged. This resulted in a higher ratio between electron transport rate (ETR) and gross CO2 assimilation rate (A
G). Since the comparison of A
N–C
i gas exchange curves can lead to incorrect conclusions, a normalization of C
i values () of stressed leaves was applied. Then, the relationship established for irrigated trees between the ETR/A
G ratio and C
i was used to estimate the from ETR/A
G ratios measured under water stress. The response of A
N to suggests that the CO2 diffusional restriction is the main factor that limits photosynthesis in orange leaves under moderate water deficit. 相似文献
8.
Tony Karlsborn A. K. M. Firoj Mahmud Hasan Tükenmez Anders S. Byström 《Metabolomics : Official journal of the Metabolomic Society》2016,12(12):177
Introduction
The Elongator complex, comprising six subunits (Elp1p-Elp6p), is required for formation of 5-carbamoylmethyl (ncm5) and 5-methoxycarbonylmethyl (mcm5) side chains on wobble uridines in 11 out of 42 tRNA species in Saccharomyces cerevisiae. Loss of these side chains reduces the efficiency of tRNA decoding during translation, resulting in pleiotropic phenotypes. Overexpression of hypomodified \( {\text {tRNA}_{{\rm s^{2} {\rm UUU}}}^{{\rm Lys}} , {\rm tRNA}_{{\rm s^{2} {\rm UUG}}}^{{\rm Gln }} \;{\rm and}\;{\rm tRNA}_{{\rm s^{2} {\rm UUC}}}^{{\rm Glu}}} \), which in wild-type strains are modified with mcm5s2U, partially suppress phenotypes of an elp3Δ strain.Objectives
To identify metabolic alterations in an elp3Δ strain and elucidate whether these metabolic alterations are suppressed by overexpression of hypomodified \( {\text {tRNA}_{{\rm s^{2} {\rm UUU}}}^{{\rm Lys}} , {\rm tRNA}_{{\rm s^{2} {\rm UUG}}}^{{\rm Gln }} \;{\rm and}\;{\rm tRNA}_{{\rm s^{2} {\rm UUC}}}^{{\rm Glu}}} \).Method
Metabolic profiles were obtained using untargeted GC-TOF-MS of a temperature-sensitive elp3Δ strain carrying either an empty low-copy vector, an empty high-copy vector, a low-copy vector harboring the wild-type ELP3 gene, or a high-copy vector overexpressing \( {\text {tRNA}_{{\rm s^{2} {\rm UUU}}}^{{\rm Lys}} , {\rm tRNA}_{{\rm s^{2} {\rm UUG}}}^{{\rm Gln }} \;{\rm and}\;{\rm tRNA}_{{\rm s^{2} {\rm UUC}}}^{{\rm Glu}}} \). The temperature sensitive elp3Δ strain derivatives were cultivated at permissive (30 °C) or semi-permissive (34 °C) growth conditions.Results
Culturing an elp3Δ strain at 30 or 34 °C resulted in altered metabolism of 36 and 46 %, respectively, of all metabolites detected when compared to an elp3Δ strain carrying the wild-type ELP3 gene. Overexpression of hypomodified \( {\text {tRNA}_{{\rm s^{2} {\rm UUU}}}^{{\rm Lys}} , {\rm tRNA}_{{\rm s^{2} {\rm UUG}}}^{{\rm Gln }} \;{\rm and}\;{\rm tRNA}_{{\rm s^{2} {\rm UUC}}}^{{\rm Glu}}} \) suppressed a subset of the metabolic alterations observed in the elp3Δ strain.Conclusion
Our results suggest that the presence of ncm5- and mcm5-side chains on wobble uridines in tRNA are important for metabolic homeostasis.9.
10.
Peatland headwater streams are consistently supersaturated with respect to gaseous C and are known to degas CO2 and CH4 directly to the atmosphere. Using a combination of injection of a purposeful gas tracer (propane) and a soluble tracer (NaCl) we carried out 49 measurements of the gas transfer coefficient on 12 representative stream reaches to quantify the gas transfer rates of CO2 and CH4 in headwater (1st–3rd order) streams draining six UK peatlands. These were compared to measured stream reach physical variables, such as discharge and water travel time. Whilst we found that evasion rates were highly variable in space and time, $ {\text{K}}_{{{\text{CO}}_{2} }} $ (gas transfer coefficient of CO2) was positively related to discharge. Individual study sites showed a high degree of variability in gas transfer rates; at all 49 sites median/mean values for $ {\text{K}}_{{{\text{CO}}_{2} }} $ were 0.087/0.157 and $ {\text{K}}_{{{\text{CH}}_{4} }} $ 0.092/0.176 min?1. Median/mean instantaneous CO2 and CH4 evasion rates were 133/367 and 0.22/1.45 μg C m?2 s?1, respectively. Methane evasion rates were therefore more than two orders of magnitude lower than CO2, with CH4 invasion (rather than evasion) measured on 37 % of occasions. Our gas flux measurements from peatland headwater streams are higher than values previously used to estimate landscape scale fluxes and emphasise the importance of the evasion flux term in the overall carbon balance. 相似文献
11.
Toshihiro Miyajima Chikage Yoshimizu Yoshie Tsuboi Yoshiyuki Tanaka Ichiro Tayasu Toshi Nagata Isao Koike 《Biogeochemistry》2009,95(2-3):243-260
The longitudinal variations in the nitrogen (δ15N) and oxygen (δ18O) isotopic compositions of nitrate (NO3 ?), the carbon isotopic composition (δ13C) of dissolved inorganic carbon (DIC) and the δ13C and δ15N of particulate organic matter were determined in two Southeast Asian rivers contrasting in the watershed geology and land use to understand internal nitrogen cycling processes. The $ \delta^{15} {\text{N}}_{{{\text{NO}}_{3} }} $ became higher longitudinally in the freshwater reach of both rivers. The $ \delta^{18} {\text{O}}_{{{\text{NO}}_{3} }} $ also increased longitudinally in the river with a relatively steeper longitudinal gradient and a less cultivated watershed, while the $ \delta^{18} {\text{O}}_{{{\text{NO}}_{3} }} $ gradually decreased in the other river. A simple model for the $ \delta^{15} {\text{N}}_{{{\text{NO}}_{3} }} $ and the $ \delta^{18} {\text{O}}_{{{\text{NO}}_{3} }} $ that accounts for simultaneous input and removal of NO3 ? suggested that the dynamics of NO3 ? in the former river were controlled by the internal production by nitrification and the removal by denitrification, whereas that in the latter river was significantly affected by the anthropogenic NO3 ? loading in addition to the denitrification and/or assimilation. In the freshwater-brackish transition zone, heterotrophic activities in the river water were apparently elevated as indicated by minimal dissolved oxygen, minimal δ13CDIC and maximal pCO2. The δ15N of suspended particulate nitrogen (PN) varied in parallel to the $ \delta^{15} {\text{N}}_{{{\text{NO}}_{3} }} $ there, suggesting that the biochemical recycling processes (remineralization of PN coupled to nitrification, and assimilation of NO3 ?-N back to PN) played dominant roles in the instream nitrogen transformation. In the brackish zone of both rivers, the $ \delta^{15} {\text{N}}_{{{\text{NO}}_{3} }} $ displayed a declining trend while the $ \delta^{18} {\text{O}}_{{{\text{NO}}_{3} }} $ increased sharply. The redox cycling of NO3 ?/NO2 ? and/or deposition of atmospheric nitrogen oxides may have been the major controlling factor for the estuarine $ \delta^{15} {\text{N}}_{{{\text{NO}}_{3} }} $ and $ \delta^{18} {\text{O}}_{{{\text{NO}}_{3} }} $ , however, the exact mechanism behind the observed trends is currently unresolved. 相似文献
12.
Xu Pang Xing-Zhong Yuan Zhen-Dong Cao Shi-Jian Fu 《Journal of comparative physiology. B, Biochemical, systemic, and environmental physiology》2013,183(1):99-108
To investigate the effects of temperature and exercise training on swimming performance in juvenile qingbo (Spinibarbus sinensis), we measured the following: (1) the resting oxygen consumption rate $ \left( {{\dot{\text{M}}\text{O}}_{{ 2 {\text{rest}}}} } \right) $ , critical swimming speed (U crit) and active oxygen consumption rate $ \left( {{\dot{\text{M}}\text{O}}_{{ 2 {\text{active}}}} } \right) $ of fish at acclimation temperatures of 10, 15, 20, 25 and 30 °C and (2) the $ \dot{M}{\text{O}}_{{ 2 {\text{rest}}}} $ , U crit and $ \dot{M}{\text{O}}_{{ 2 {\text{active}}}} $ of both exercise-trained (exhaustive chasing training for 14 days) and control fish at both low and high acclimation temperatures (15 and 25 °C). The relationship between U crit and temperature (T) approximately followed a bell-shaped curve as temperature increased: U crit = 8.21/{1 + [(T ? 27.2)/17.0]2} (R 2 = 0.915, P < 0.001, N = 40). The optimal temperature for maximal U crit (8.21 BL s?1) in juvenile qingbo was 27.2 °C. Both the $ \dot{M}{\text{O}}_{{ 2 {\text{active}}}} $ and the metabolic scope (MS, $ \dot{M}{\text{O}}_{{ 2 {\text{active}}}} - \dot{M}{\text{O}}_{{ 2 {\text{rest}}}} $ ) of qingbo increased with temperature from 10 to 25 °C (P < 0.05), but there were no significant differences between fish acclimated to 25 and 30 °C. The relationships between $ \dot{M}{\text{O}}_{{ 2 {\text{active}}}} $ or MS and temperature were described as $ {\dot{\text{M}}\text{O}}_{{ 2 {\text{active}}}} = 1,214.29/\left\{ {1 + \left[ {\left( {T - 28.8} \right)/10.6} \right]^{2} } \right\}\;\left( {R^{2} = 0.911,\;P < 0.001,\;N = 40} \right) $ and MS = 972.67/{1 + [(T ? 28.0)/9.34]2} (R 2 = 0.878, P < 0.001, N = 40). The optimal temperatures for $ \dot{M}{\text{O}}_{{ 2 {\text{active}}}} $ and MS in juvenile qingbo were 28.8 and 28.0 °C, respectively. Exercise training resulted in significant increases in both U crit and $ \dot{M}{\text{O}}_{{ 2 {\text{active}}}} $ at a low temperature (P < 0.05), but training exhibited no significant effect on either U crit or $ \dot{M}{\text{O}}_{{ 2 {\text{active}}}} $ at a high temperature. These results suggest that exercise training had different effects on swimming performance at different temperatures. These differences may be related to changes in aerobic metabolic capability, arterial oxygen delivery, available dissolved oxygen, imbalances in ion fluxes and stimuli to remodel tissues with changes in temperature. 相似文献
13.
Quantifying the risk of mis-estimating correlation significance of climate–tree growth relationships
In dendroecology, sampling effort has a strong influence of both regional chronology properties and climate–tree growth relationships assessment. Recent studies evidenced that decreasing sample size leads to a weakening of the bootstrapped correlation coefficients ( ${\text{BCC}}$ BCC ). The present analysis focused on the risk of mis-estimating the significance of population ${\text{BCC}}\,\left( {{\text{BCC}}_{\text{POP}} } \right)$ BCC ( BCC POP ) from a sample of N trees, and then proposed an approach to detect and correct mis-estimations using the properties of the sample. The sample size effect and the limits of the correction were illustrated from 840 individual growth chronologies of Corsican pine (Pinus nigra Arnold ssp. laricio Poiret var. Corsicana) sampled in Western France. The 840 trees were used to assess the population characteristics, and the effect of sampling effort was investigated through a simulation approach based on a resampling procedure of N trees amongst 840 (N ? [5; 50]). Our results evidenced that the risk strongly varied amongst the climatic regressors. The highest risks were evidenced for significant ${\text{BCC}}_{\text{POP}}$ BCC POP , with a percentage of mis-estimation ranging from 25 to 80. On the contrary, small samples allowed providing an reliable estimation of the significance of non-significant ${\text{BCC}}_{\text{POP}}$ BCC POP . To a lesser extent, the risk slightly decreased with increasing N, according to a negative exponential trend. The detection and correction method was found relevant to detect mis-estimation only for significant ${\text{BCC}}_{\text{POP}}$ BCC POP ; otherwise, the ${\text{BCC}}_{\text{POP}}$ BCC POP significance was generally overestimated. 相似文献
14.
R. Ryan Geyer Mark D. Parker Ashley M. Toye Walter F. Boron Raif Musa-Aziz 《The Journal of membrane biology》2013,246(12):915-926
Mammalian glycosylated rhesus (Rh) proteins include the erythroid RhAG and the nonerythroid RhBG and RhCG. RhBG and RhCG are expressed in multiple tissues, including hepatocytes and the collecting duct (CD) of the kidney. Here, we expressed human RhAG, RhBG and RhCG in Xenopus oocytes (vs. H2O-injected control oocytes) and used microelectrodes to monitor the maximum transient change in surface pH (ΔpHS) caused by exposing the same oocyte to 5 % CO2/33 mM HCO3 ? (an increase) or 0.5 mM NH3/NH4 + (a decrease). Subtracting the respective values for day-matched, H2O-injected control oocytes yielded channel-specific values (*). $({\Updelta {\text{pH}}_{\text{S}}^{*} })_{{{\text{CO}}_{ 2} }}$ and $({ - \Updelta {\text{pH}}_{\text{S}}^{*} })_{{{\text{NH}}_{ 3} }}$ were each significantly >0 for all channels, indicating that RhBG and RhCG—like RhAG—can carry CO2 and NH3. We also investigated the role of a conserved aspartate residue, which was reported to inhibit NH3 transport. However, surface biotinylation experiments indicate the mutants RhBGD178N and RhCGD177N have at most a very low abundance in the oocyte plasma membrane. We demonstrate for the first time that RhBG and RhCG—like RhAG—have significant CO2 permeability, and we confirm that RhAG, RhBG and RhCG all have significant NH3 permeability. However, as evidenced by $({\Updelta {\text{pH}}_{\text{S}}^{*} })_{{{\text{CO}}_{ 2} }} /({ - \Updelta {\text{pH}}_{\text{S}}^{*} })_{{{\text{NH}}_{ 3} }}$ values, we could not distinguish among the CO2/NH3 permeability ratios for RhAG, RhBG and RhCG. Finally, we propose a mechanism whereby RhBG and RhCG contribute to acid secretion in the CD by enhancing the transport of not only NH3 but also CO2 across the membranes of CD cells. 相似文献
15.
Sandy Adriaenssens Jeroen Staelens Karen Wuyts Roeland Samson Kris Verheyen Pascal Boeckx 《Ecosystems》2012,15(7):1093-1107
Nitrogen (N) retention by tree canopies is believed to be an important process for tree nutrient uptake, and its quantification is a key issue in determining the impact of atmospheric N deposition on forest ecosystems. Due to dry deposition and retention by other canopy elements, the actual uptake and assimilation by the tree canopy is often obscured in throughfall studies. In this study, 15N-labeled solutions ( $ ^{15} {\text{NH}}_{4}^{ + } $ and $ ^{15} {\text{NO}}_{3}^{ - } $ ) were used to assess dissolved inorganic N retention by leaves/needles and twigs of European beech, pedunculate oak, silver birch, and Scots pine saplings. The effects of N form, tree species, leaf phenology, and applied $ {\text{NO}}_{3}^{ - } $ to $ {\text{NH}}_{4}^{ + } $ ratio on the N retention were assessed. Retention patterns were mainly determined by foliar uptake, except for Scots pine. In twigs, a small but significant 15N enrichment was detected for $ {\text{NH}}_{4}^{ + } $ , which was found to be mainly due to physicochemical adsorption to the woody plant surface. The mean $ {{^{15} {\text{NH}}_{4}^{ + } } \mathord{\left/ {\vphantom {{^{15} {\text{NH}}_{4}^{ + } } {^{15} {\text{NO}}_{3}^{ - } }}} \right. \kern-0em} {^{15} {\text{NO}}_{3}^{ - } }} $ retention ratio varied considerably among species and phenological stadia, which indicates that the use of a fixed ratio in the canopy budget model could lead to an over- or underestimation of the total N retention. In addition, throughfall water under each branch was collected and analyzed for $ ^{15} {\text{NH}}_{4}^{ + } $ , $ ^{15} {\text{NO}}_{3}^{ - } $ , and all major ions. Net throughfall of $ ^{15} {\text{NH}}_{4}^{ + } $ was, on average, 20 times higher than the actual retention of $ ^{15} {\text{NH}}_{4}^{ + } $ by the plant material. This difference in $ ^{15} {\text{NH}}_{4}^{ + } $ retention could not be attributed to pools and fluxes measured in this study. The retention of $ ^{15} {\text{NH}}_{4}^{ + } $ was correlated with the net throughfall of K+, Mg2+, Ca2+, and weak acids during leaf development and the fully leafed period, while no significant relationships were found for $ ^{15} {\text{NO}}_{3}^{ - } $ retention. This suggests that the main driving factors for $ {\text{NH}}_{4}^{ + } $ retention might be ion exchange processes during the start and middle of the growing season and passive diffusion at leaf senescence. Actual assimilation or abiotic uptake of N through leaves and twigs was small in this study, for example, 1–5% of the applied dissolved 15N, indicating that the impact of canopy N retention from wet deposition on forest productivity and carbon sequestration is likely limited. 相似文献
16.
Sebastian A. Stoian Chung-Hung Hsieh Michael L. Singleton Andrea F. Casuras Marcetta Y. Darensbourg Kelsey McNeely Kurt Sweely Codrina V. Popescu 《Journal of biological inorganic chemistry》2013,18(6):609-622
Mössbauer studies of [{μ-S(CH2C(CH3)2CH2S}(μ-CO)FeIIFeI(PMe3)2(CO)3]PF6 (1 OX ), a model complex for the oxidized state of the [FeFe] hydrogenases, and the parent FeIFeI derivative are reported. The paramagnetic 1 OX is part of a series featuring a dimethylpropanedithiolate bridge, introducing steric hindrance with profound impact on the electronic structure of the diiron complex. Well-resolved spectra of 1 OX allow determination of the magnetic hyperfine couplings for the low-spin distal FeI ( $ {\text{Fe}}^{\text{I}} _{\text{ D}} $ Fe D I ) site, A x,y,z = [?24 (6), ?12 (2), 20 (2)] MHz, and the detection of significant internal fields (approximately 2.3 T) at the low-spin ferrous site, confirmed by density functional theory (DFT) calculations. Mössbauer spectra of 1 OX show nonequivalent sites and no evidence of delocalization up to 200 K. Insight from the experimental hyperfine tensors of the FeI site is used in correlation with DFT to reveal the spatial distribution of metal orbitals. The Fe–Fe bond in [Fe2{μ-S(CH2C(CH3)2CH2S}(PMe3)2(CO)4] (1) involving two $ d_{{z^{2} }} $ d z 2 -type orbitals is crucial in keeping the structure intact in the presence of strain. On oxidation, the distal iron site is not restricted by the Fe–Fe bond, and thus the more stable isomer results from inversion of the square pyramid, rotating the $ d_{{z^{2} }} $ d z 2 orbital of $ {\text{Fe}}^{\text{I}} _{\text{ D}} $ Fe D I . DFT calculations imply that the Mössbauer properties can be traced to this $ d_{{z^{2} }} $ d z 2 orbital. The structure of the magnetic hyperfine coupling tensor, A, of the low-spin FeI in 1 OX is discussed in the context of the known A tensors for the oxidized states of the [FeFe] hydrogenases. 相似文献
17.
Anthony P. Farrell Erika J. Eliason Timothy D. Clark Maria F. Steinhausen 《Journal of comparative physiology. B, Biochemical, systemic, and environmental physiology》2014,184(7):855-864
While it is well known that O2 is directly removed from the water by skin and gill tissues of fish, the mismatch between O2 removal from water (O2 uptake; \(\dot{V}{\text{O}}_{ 2}\) ) and the O2 delivered to tissues by the primary circulation (O2 consumption; \(\dot{V}{\text{aO}}_{ 2}\) ) has never been measured directly. Using data from four recent studies that simultaneously measured \(\dot{V}{\text{O}}_{ 2}\) and \(\dot{V}{\text{aO}}_{ 2}\) in 2–5 kg Pacific salmon, our analysis revealed that sockeye salmon can remove an additional 12–48 % more O2 from the water than the primary circulation delivers to the systemic tissues. This percentage did not change significantly during swimming activity, a result that contradicts an earlier prediction that the difference should decrease when \(\dot{V}{\text{O}}_{ 2}\) increases during exercise. In resting Chinook salmon, a similar percentage difference in simultaneously measured \(\dot{V}{\text{O}}_{ 2}\) and \(\dot{V}{\text{O}}_{ 2}\) was observed, yet the difference tended to disappear during acute heat stress to a near lethal temperature. These results emphasize that caution should be exercised when using the Fick equation to estimate cardiac output because the overestimate of cardiac output that results from using the Fick equation in Pacific salmon is not small, may not be fixed and may exist in other teleosts. 相似文献
18.
PAM (Pulse Amplitude Modulation) fluorometer techniques directly measure the light reactions of photosynthesis that are otherwise difficult to estimate in CAM (Crassulacean Acid metabolism) plants such as pineapple (Ananas comosus comosus cv. Phuket). PAM machines calculate photosynthesis as the Electron Transport Rate (ETR) through PSII (4 electrons per O2 produced) as mol m?2 s?1. P vs. E curves fitted the waiting-in-line function (an equation of the form $ {\hbox{ETR}} = \left( {{\hbox{ET}}{{\hbox{R}}_{{ \max }}} \times {\hbox{E}}/{{\hbox{E}}_{\rm{opt}}}} \right).{{\hbox{e}}^{{1} - {\rm{E}}/{\rm{Eopt}}}} $ ) allowing half-saturating and optimal irradiances (Eopt) to be estimated. Effective Quantum Yield (Ymax), Electron Transport Rate (ETRmax) and the Non-Photochemical Quenching parameter, NPQmax all vary on a diurnal cycle but the parameter qNmax does not show a systematic variation over a diurnal period. Phuket pineapple is a “sun plant” with Optimum Irradiance (Eopt) from 755 to 1,130 μmol m?2 s?1 (400–700 nm) PAR but photosynthetic capacity is very low in the late afternoon even though light conditions are favourable for rapid photosynthesis. Total CO2 fixed nocturnally as C4-dicarboxylic acids by leaves of the Phuket pineapple was only ≈0.14 gC m?2 d?1 (0.012 mol C m?2 d?1). Titratable acid of leaves was depleted about 3 pm (15:00) and shows a classical CAM diurnal cycle. The Phuket pineapple variety only stored enough CO2 as C4 acids to account for only about 2.5% of photosynthesis (Pg) estimated using the PAM machine (≈5.6 gC m?2 d?1). Phuket pineapples are classifiable as CAM-Cycling plants but nocturnal fixation of CO2 is so low compared to the more familiar Smooth Cayenne variety that it probably recycles only a small proportion of the respiratory CO2 produced in leaves at night and so even CAM-cycling is only of minor importance to the carbon economy of the plant. Unlike the Smooth Cayenne pineapple variety, which fixes large amounts of CO2 nocturnally, the Phuket pineapple is for practical purposes a C3 plant. 相似文献
19.
Yasuyuki Maki Yumeno Endo Miyako Fukushima Mayumi Nishiyama Toshiaki Dobashi Hiroyuki Sumino Masami Murakami 《Journal of Biorheology》2013,26(1-2):69-73
Recently, a microchannel flow analyzer (MC-FAN) has been used to study the flow properties of blood. However, the correlation between blood passage time measured by use of the MC-FAN and hemorheology has not been clarified. In this study, a simple model is proposed for estimation of liquid viscosity from the passage time t p of liquids. The t p data for physiological saline were well represented by the model. According to the model, the viscosity of Newtonian fluids was estimated reasonably well from the t p data. For blood samples, although the viscosity $ \eta_{\text{mc}} $ estimated from t p was shown to be smaller than the viscosity $ \eta_{{450{\text{s}}^{ - 1} }} $ measured by use of a rotatory viscometer at a shear rate of 450 s?1, $ \eta_{\text{mc}} $ was correlated with $ \eta_{{450{\text{s}}^{ - 1} }} $ . An empirical equation for estimation of $ \eta_{{450{\text{s}}^{ - 1} }} $ from $ \eta_{\text{mc}} $ of blood samples is proposed. 相似文献
20.
Mass attenuation coefficient, $ \mu_{m} $ , atomic cross-section, $ \sigma_{i} $ , electronic cross-section, $ \sigma_{e} $ , effective atomic number, $ Z_{\text{eff}} $ and effective electron density, $ N_{\text{el}} $ , were determined experimentally and theoretically for some vitamins (retinol, beta-carotene, thiamine, riboflavin, niacinamide, pantothenic acid, pyridoxine, biotin, folic acid, cyanocobalamin, ascorbic acid, cholecalciferol, alpha-tocopherol, ketamine, hesperidin) at 30.82, 59.54, 80.99, 356.61, 661.66 and 1,408.01?keV photon energies using a NaI(Tl) scintillation detector. The theoretical mass attenuation coefficients were estimated using mixture rules. The calculated values were compared with the experimental values for all vitamins. 相似文献