MRSA的7种新SCCmec型别及其抗药特性

为探明海口地区耐甲氧西林金黄色葡萄球菌(MRSA)的耐药性和携带的葡萄球菌染色体mec盒(SCCmec)型别,对收集的1174株金黄色葡萄球菌用PBP2a检测法确证为MRSA有686株,用多重PCR对58株进行SCCmec分型测定,并用K-B琼脂扩散法和E-test法测定其对临床常用7类抗生素的代表性药物耐药性。结果在17株中又发现了7种新的SCCmec型别,其结构特点为:New3含A、F、H、M4个位点,New4型含F、H、M3个位点,New5含D、B、M3个位点,New6型含A、B、M3个位点,New7型含H、E、C、M4个位点,New8型含A、M两个位点,New9型含A、C、M3个位点;它们均与报道型别的结构特点存在明显差异;且携带新型的MRSA菌株,其分布特点及抗药性也与已报道的菌株存在差异:多分自门诊病人,且耐药性高,抗药谱较广,值得引起高度重视和关注。     

MRSA的7种新SCCmec型别及其抗药特性

为探明海口地区耐甲氧西林金黄色葡萄球菌(MRSA)的耐药性和携带的葡萄球菌染色体mec盒(SCCmec)型别,对收集的1174株金黄色葡萄球菌用PBP2a检测法确证为MRSA有686株,用多重PCR对58株进行SCCmec分型测定,并用K-B琼脂扩散法和E-test法测定其对临床常用7类抗生素的代表性药物耐药性。结果在17株中又发现了7种新的SCCmec型别,其结构特点为:New3含A、F、H、M4个位点,New4型含F、H、M3个位点,New5含D、B、M3个位点,New6型含A、B、M3个位点,New7型含H、E、C、M4个位点,New8型含A、M两个位点,New9型含A、C、M3个位点;它们均与报道型别的结构特点存在明显差异;且携带新型的MRSA菌株,其分布特点及抗药性也与已报道的菌株存在差异:多分自门诊病人,且耐药性高,抗药谱较广,值得引起高度重视和关注。     

Mechanisms of song differentiation in introduced populations of Chaffinches Fringilla coelebs in New Zealand

Chaffinches Fringilla coelebs were introduced to New Zealand from Great Britain over 100 years ago, and since then their songs have diverged from British ones in both syllable structure and basic organization of syllable sequences. The New Zealand populations seem to be unique in that their songs have undergone differentiation of trill segments by progressive elaboration of syllable morphology and hp ascending and descending changes of pitch. Published sonagrams of British song types have significantly more trill phrases and significantly fewer syllables in the end phrase than do Yew Zealand ones. Many New Zealand song types have much elaborated end phrases and concomitantly simpler trill segments, with songs quite commonly having only one trill phrase. This reversal of complexity between the trill and end phrase in New Zealand seems to have been derived by progressive reduction of the ultimate trill phrase to one syllable, and by recombination of end phrase syllables from different song types into one compound end phrase. The significance of the increased complexity in the end phrases of many song types may relate to the sound transmission properties of dense pine forests in New Zealand, in which Chaffinches are ubiquitous. Elaborate end phrases degrade much less from reverberation in pine forests because individual syllables have more dispersed temporal patterning.
Recombination of syllables to form new song types is a major mechanism of song differentiation in New Zealand. Although whole song copying is the predominant mode of replication, very few song types in a locality sample are composed of a unique set of syllables. Rather, song types in an area are interconnected by different combinations of shared syllables, suggesting that the incorporation of some local syllables in a bird's repertoire is sufficient to signal its status as a member of a neighbourhood and also allows the evolution of broadcast complexity.     

Photoreceptor evolution: ancient siblings serve different tasks

Photoreceptor cells of vertebrate eyes are fundamentally different from those of invertebrate eyes. New work on the brain of a ragworm now suggests that ancestral bilaterians possessed both types of photoreceptor cell.     

Bryozoans and microbial communities of cool-temperate to subtropical latitudes—paleoecological implications

The environmental distribution of encrusting bryozoans settling on disarticulated and living bivalve shells has been recorded from five stations in Japan and New Zealand. Some insight into the observed distribution patterns emerges from information on the interaction of bryozoans with microbial mats. Advancing existing classifications, we have subdivided the encrusting bryozoan morphotypes into seven different growth types that largely reflect the biological potentials of bryozoans in competition for space on substrate surfaces. The frequency distribution of these types (s-/c-/m-/z-laminae, runners, spots, bryostromatolites) reveals the influence of microbial mats as a control factor of bryozoan substrate coverage. Microbial mats in turn are correlated with latitudinal gradients in Japan and New Zealand from cool-temperate to subtropical and tropical waters. Unlike erect bryozoans, laminar ones are probably underrated as facies fossils. Accordingly, laminar bryozoan growth types are reconsidered as a tool for paleoecological interpretation of marine hard substrate communities.     

Reaction centres: the structure and evolution of biological solar power

Reaction centres are complexes of pigment and protein that convert the electromagnetic energy of sunlight into chemical potential energy. They are found in plants, algae and a variety of bacterial species, and vary greatly in their composition and complexity. New structural information has highlighted features that are common to the different types of reaction centre and has provided insights into some of the key differences between reaction centres from different sources. New ideas have also emerged on how contemporary reaction centres might have evolved and on the possible origin of the first chlorophyll-protein complexes to harness the power of sunlight.     

Mitochondrial control-region sequence variation in aboriginal Australians.

The mitochondrial D-loop hypervariable segment 1 (mt HVS1) between nucleotides 15997 and 16377 has been examined in aboriginal Australian people from the Darling River region of New South Wales (riverine) and from Yuendumu in central Australia (desert). Forty-seven unique HVS1 types were identified, varying at 49 nucleotide positions. Pairwise analysis by calculation of BEPPI (between population proportion index) reveals statistically significant structure in the populations, although some identical HVS1 types are seen in the two contrasting regions. mt HVS1 types may reflect more-ancient distributions than do linguistic diversity and other culturally distinguishing attributes. Comparison with sequences from five published global studies reveals that these Australians demonstrate greatest divergence from some Africans, least from Papua New Guinea highlanders, and only slightly more from some Pacific groups (Indonesian, Asian, Samoan, and coastal Papua New Guinea), although the HVS1 types vary at different nucleotide sites. Construction of a median network, displaying three main groups, suggests that several hypervariable nucleotide sites within the HVS1 are likely to have undergone mutation independently, making phylogenetic comparison with global samples by conventional methods difficult. Specific nucleotide-site variants are major separators in median networks constructed from Australian HVS1 types alone and for one global selection. The distribution of these, requiring extended study, suggests that they may be signatures of different groups of prehistoric colonizers into Australia, for which the time of colonization remains elusive.     

Patterns of genetic variation in the adaptive radiation of New World crossbills (Aves: Loxia)

Incipient species groups or young adaptive radiations such as crossbills (Aves: Loxia) present the opportunity to investigate directly the processes occurring during speciation. New World crossbills include white-winged crossbills (Loxia leucoptera), Hispaniolan crossbills (Loxia megaplaga), and red crossbills (Loxia curvirostra complex), the last of which is comprised of at least nine morphologically and vocally differentiated forms ('call types') where divergent natural selection for specialization on different conifer resources has been strongly implicated as driving diversification. Here we use amplified fragment length polymorphism (AFLP) markers to investigate patterns of genetic variation across populations, call types, and species of New World crossbills. Tree-based analyses using 440 AFLP loci reveal strongly supported clustering of the formally recognized species, but did not separate individuals from the eight call types in the red crossbill complex, consistent with recent divergence and ongoing gene flow. Analyses of genetic differentiation based on inferred allele frequency variation however, reveal subtle but significant levels of genetic differentiation among the different call types of the complex and indicate that between call-type differentiation is greater than that found among different geographic locations within call types. Interpreted in light of evidence of divergent natural selection and strong premating reproductive isolation, the observed genetic differentiation suggests restricted gene flow among sympatric call types consistent with the early stages of ecological speciation.     

H.p.l.c. analysis of di- and tri-carboxylic porphyrins in porphyric patients.

New h.p.l.c. methods have been developed for the quantitative determination of di- and tri-carboxylic porphyrin methyl esters, and applied to the analysis of faecal extracts from patients with four different types of porphyria.     

Integrating Comparative Risk Assessment with Multi-Criteria Decision Analysis to Manage Contaminated Sediments: An Example for the New York/New Jersey Harbor

Current environmental challenges involve complex assessment and analysis of tradeoffs among differing criteria, expectations, and levels of certainty. Using multi-criteria decision analysis in combination with comparative risk assessment, a systematic and transparent framework can be created to integrate different types and sources of decision-relevant information. Although examples of decision analysis abound in the literature and academic efforts, its use within the practice of risk assessment and environmental management is still being established. This article provides an example of the use of decision analysis study that builds on a previous screening-level, comparative risk assessment of contaminated sediment from the New York/New Jersey harbor area. Using multi-criteria decision analysis, we explored the effect of different criteria weights, utility functions, and cost estimates on the ranking of seven contaminated sediment management alternatives. Values used in weighting decision criteria were surveyed from two interaction sessions with sediment management professionals.     

Ultrastructural study of the microsporidian chytridiopsis typographi (Chytridiopsida: Microspora) infecting the bark beetle,Ips typographus (Scolytidae: Coleoptera), with new data on spore dimorphism

Two types of sporogony of the microsporidian Chytridiopsis typographi in the midgut of adult bark beetle, Ips typographus, have been examined by means of light and electron microscopy. New data are reported on spore dimorphism and on the formation of pansporoblasts in two types of sporogony. Thin-walled spores, larger in size, are formed in a parasitophorous vacuole in the host columnar cells. Thick-walled spores are formed in a minimal vacuole in the host. The ultrastructure of the spore walls and the cyst wall are different from the organization in other microsporidia. Both spore types have identical internal structures and viable spores.     

Seed morphology in New WorldAntirrhineae (Scrophulariaceae): Systematic and phylogenetic implications

Seeds of 39 species representing all native genera and sections of New WorldAntirrhineae were examined with the Scanning Electron Microscope and Light Microscope. Based on seed shape and surface ornamentation, seven morphological categories are recognized: cristate, tetracostate, foveolate, tumid tuberculate/cristate, circumalate, medusiform, and a miscellaneous category. Most sections and/or generic categories can be characterized by a single morphological type, althoughMaurandya s.l. has several distinctive seed types included within present generic boundaries. The cristate seed type is believed to be the “primitive type” from which the medusiform and tumid tuberculate/cristate types have developed. The tumid tuberculate/cristate type presumably gave rise to the circumalate, tetracostate, and foveolate patterns. The miscellaneous category (represented byLinaria andKickxia) may be phyletically remote from the other New World types. Seeds of the New WorldAntirrhineae mostly seem to be adapted for water dispersal although some adaptations for wind dispersal (e.g. wings, light weight) are evident. Free-hand sections and seed coat clearings indicate that circumalate seeds are of two different anatomical patterns; such structural diversity may be found in the other seed types.     

Neural stem cells in the brain

Stem cells in the central nervous system were usually considered as relevant for evaluation only in embryonic time. Recent advances in molecular cloning and immunological identification of the different cell types prove the presence of neurogenesis of the new neurons in adult mammals brains. New neurons are born in two areas of the mammal and human brain--sybventricular zone and subgranular zone of dentate gyrus. New born granular neurons of dentate gyrus have a great importance for memory and learning. New neurons originate from precursors which in culture and in situ could also transform into astrocytes and oligodendrocytes, thus fulfill criteria of neural stem cells. In culture, mitotic activity of these stem sells depends on fibroblast growth factor 2 and epidermal growth factor. Depletion of cultural medium of these factors and addition of serum, other growth factors (Platelet-derived growth factor and ciliary neurotrophic factor) leads to generation of neurons and astrocytes. Isolation and clonal analysis of stem cells is based on immunological markers such as nestin, beta-tubulin III, some types of membrane glicoproteids. Identification and visualization of stem cells in brain revealed two populations of cells which have properties of stem cells. In embryonic time, radial glia cells could give origin to neurons, in mature brain cells expressing glial fibrillar acidic protein typical marker of astrocytes fulfill criteria for stem cells. Neural stem cells could transform not only into mature neurons and glial cells but also into blood cells, thus revealing broad spectrum of progenitors from different embryonic tissues. Further progress in this field of neurobiology could give prosperity in the cell therapy of many brain diseases.     

Characterization of six microsatellite DNA loci for Sorex arizonae

Sorex arizonae is a rare species that occupies a narrow range of habitat types in several mountain ranges of New Mexico, Arizona and Northern Mexico. Here we identify and characterize six microsatellite loci for this species. We screened 63 individuals from four different localities from New Mexico and Arizona to analyse genetic variability. Alleles ranged from three to 16. Heterozygosity ranged from 40% to 78%. Most polymorphic loci were in Hardy–Weinberg equilibrium with the exception of one locus. Primers appear to have reasonable cross‐species applicability as five loci amplified in another shrew species (Sorex monticolus).     

Multinomial Distribution and Ascertainment by Sex

New ascertainment models taking into account partitioning by sex and without any constraint concerning dominance of alleles are proposed. These originate beginning from two major pathways. The first pathway assumes independence and that the family sizes for both males and females are known. The second pathway assumes dependence and that only the total family size is known. Ascertainment probabilities based on several different types of dependence are found. Results are obtained for incomplete multiple ascertainment.     

Pollen characteristics of New Zealand Gnaphalieae (Compositae) and their taxonomic significance II. Tem

Pollen ultrastructure has been investigated in 35 taxa of Gnaphalieae (Compositae), predominantly from New Zealand. Pollen grains of all taxa examined are tectate‐columellate and caveate. The characters regarded as particularly distinctive include variability of columellar form and internal organisation of the columellae. The importance of pollen characters in the classification of the New Zealand Gnaphalieae is discussed. The species of Haastia, characterised by senecioid pollen and internal tecta, do not belong to the Gnaphalieae. In the species with helianthoid pollen and sub‐columellae five different columellae types can be distinguished.     

The ecology of Araucaria species in New Guinea. I. Ordination studies of forest types and environments

Previous studies of the ecology and regeneration strategies of Araucaria cunninghamii and A. hunsteinii in New Guinea rainforests have treated these species as ecologically identical and disagree concerning their ability to maintain a stable population size in forest communities dominated by angiosperms. Vegetation data from a number of 0.5 ha forest sites in New Guinea are analysed in order to characterize forest types and their environmental regimes in the altitudinal zone from 700 to 1500 m a.s.l. Particular attention is paid to forests containing Araucaria species. Nodal component analysis identifies a number of distinct forest types or ‘series’, each dominated by a different species. Continuity analysis displays the location of sites and species in non-linear ordination space. Subsequent regression of environmental data on the position of sites in ordination space shows that forest types are separated along gradients related to altitude and rainfall on the one hand, and soil nutrient concentrations on the other. A. cunninghamii is generally found in wetter and less nutrient-rich sites than A. hunsteinii. The analysis of species presence data, as opposed to quantitative data, shows that whilst forest types are easily differentiated according to their dominant species, changes in floristic composition are subtle along the altitudinal and other gradients recognized.     

Making sense of Jewish ethnicity: Identification patterns of New Zealanders of mixed parentage

Modern social life is sometimes characterized as ‘post‐traditional’, an environment where personal identity is continually reconstructed. Concepts of ethnic identity on the other hand usually evoke some notion of tradition, continuity with the past, and intersubjectivity. This article discusses the personal accounts of Jewishness given by a sample of New Zealanders with ‘mixed’ (Jewish and gentile) backgrounds. It explores and analyses their use of themes that come from both modernity and Jewish tradition and defines the different types of identification implicit in their accounts. Particular attention is paid to how these kinds of identification are transmitted, because the literature (on both Jewishness and ethnicity in general) contains debates about the persistence of different expressions of identity. I conclude that a substantial dispersal of Jewish identity has occurred in New Zealand which apparently contradictory theoretical positions are useful in explaining. This suggests that a more holistic perspective is required to account adequately for the diversity of ethnic identity in contemporary society.     

Multi-attribute ecological river typology for assessing ecological condition and conservation planning

A river classification framework is needed to make good management and planning decisions about river health and biodiversity. We developed a multi-attribute ecological river typology to address this need in the Australian State of New South Wales (801,428 km²). Multivariate patterns in data collected from 322 reference sites were used to define river types for each attribute: abiotic features (10 types), fish assemblages (6 types) and macroinvertebrate assemblages from river edges (8 types) and riffle zones (5 types). We used classification tree analysis to define broad regions for each attribute and then to construct identification keys for river types within each region using slope, elevation, maximum distance from source, latitude and mean annual rainfall. These keys allow the mapping of the likely spatial extent of river types and the assignment of a multi-attribute river-type identity to a river reach anywhere in the State. We used the average dissimilarity distances among the river types and the rates of misclassification of reference sites to assess the reliability of the assignments for different attributes in different regions. This approach to river classification can be applied anywhere in the world, resulting in simple to highly complex typologies depending on data availability. In data-poor areas it may result in a single attribute typology based on remotely derived variables and a coarsely defined reference condition. In data-rich areas the typology may have a large number of attributes using very large datasets with high resolution. Handling editor: D. Dudgeon     

Evolution of Two Types of Rhesus Lymphocryptovirus Similar to Type 1 and Type 2 Epstein-Barr Virus

Rhesus monkeys and other nonhuman Old World primates are naturally infected with lymphocryptoviruses (LCV) that are closely related to Epstein-Barr virus (EBV). A rhesus LCV isolate (208-95) was derived from a B-cell lymphoma in a simian immunodeficiency virus-infected rhesus macaque. The EBNA-2 homologues from 208-95 and a previous rhesus LCV isolate (LCL8664) were polymorphic on immunoblotting, so the EBNA-2 genes from these two rhesus LCV were cloned, sequenced, and compared. The EBNA-2 genes have 40% nucleotide and 41% amino acid identities, and the differences are similar to those between the type 1 and type 2 EBV EBNA-2. Sequence from a portion of the LMP1 gene which is extremely divergent among different LCV was virtually identical between the 208-95 and LCL8664 strains, confirming a common rhesus LCV background. Thus, the EBNA-2 polymorphism defines the presence of two different rhesus LCV types, and both rhesus LCV types were found to be prevalent in the rhesus monkey population at the New England Regional Primate Research Center. The existence of two rhesus LCV types suggests that the selective pressure for the evolution of two LCV types is shared by human and nonhuman primate hosts.