Gender distribution,sexual size dimorphism and morphometric sexing in ballan wrasse Labrus bergylta

In wild ballan wrasse Labrus bergylta, mass–length relationships were not different between genders, and positive allometry was found in the mixed‐gender population. Male‐biased sexual size dimorphism was significant and the most effective morphometric method for sexing L. bergylta outside of the species spawning window used body mass (M_B in g), total body length (L_T in mm) and Fulton's condition factor (K) as discriminant variables to predict gender with 91% accuracy. The discriminant score (S_D) of a specimen can be calculated as S_D = 0·01 M_B ? 0·016 L_T ? 3·835 K + 6·252 to predict its gender as female or male if S_D is < 1·459 or S_D is > 1·504, respectively. There was a potential trend towards earlier sexual inversion compared to previous studies at comparable latitudes. Sex change is a phenotypically plastic trait under social control in haremic fishes and should be monitored in increasingly exploited L. bergylta.     

The effects of salinity on acute and chronic nickel toxicity and bioaccumulation in two euryhaline crustaceans: Litopenaeus vannamei and Excirolana armata

We investigated the influence of salinity (5 ppt versus 25 ppt) on acute (96-h LC₅₀) and chronic toxicity (15–30 day LC₅₀) of Ni in two euryhaline crustaceans, the shrimp (Litopenaeus vannamei) and the isopod (Excirolana armata). 96-h LC50 values were 41 μmol L⁻¹ and 362 μmol L⁻¹ for L. vannamei and 278 μmol L⁻¹ and > 1000 μmol L⁻¹ for E. armata at 5 ppt and 25 ppt, respectively. Speciation analysis demonstrated that complexation with anions such as SO₄²⁻, HCO₃⁻ and Cl⁻ at 25 ppt had a negligible effect on reducing the free Ni²⁺ ion component in comparison to 5 ppt. The salinity-dependent differences in acute Ni toxicity could not be explained by differences in Ni bioaccumulation. Therefore, differences in physiology of the organisms at the two salinities may be the most likely factor contributing to differences in acute Ni toxicity. Chronic LC₅₀ values (2.7–23.2 μmol L⁻¹) were similar in the two species, but salinity had no significant effect, indicating that water chemistry and osmoregulatory strategy do not influence chronic toxicity. However chronic (15-day) mortality in both species could be predicted by acute (96-h) Ni bioaccumulation patterns.     

Some Results on Error Rates for Quadratic Discrimination with Known Population Parameters

Let population Π_i, i = 1,2, be characterized by a multivariate normal density function, N(μ_i,∑_i), i = 1, 2, respectively. This paper provides conditions under which simple conditional error rates may be computed for the quadratic discriminant function with known population parameters. Also, a simple bound on the overall error rate is derived. Examples are given which demonstrate the proposed methods.     

Polarization of counterions in polyelectrolytes

A theory of the polarization of counterions bound to a polyion, such as a DNA, in low and high electric field strengths is developed using statistical mechanics of inhomogeneous systems. For low fields, one finds that the polarizability p is (Zq)² ρ0βL³/(12[1 + Lρ0σ(L, b, ζ, Z, I, ρ0)]J), where σ = ∫¹₀ (λ′ − λ₀ {dc(λ − λ′)/dλ}_{λ = λ0} dλ′J), Z and L are the valence and the length of the polyion, respectively, q is the proton charge, β = 1/k_BT, T is the temperature, k_B is the Boltzmann constant, I is the ionic strength, λ = x/L and λ₀ = x₀/L are scaled distances, x₀ is a reference point such that the inhomogeneous counterion density at x₀ is equal to ρ₀—the uniform density in the absence of an electric field E—and c(x) is the direct correlation function of the homogeneous counterion-polyion phase, which includes attractive and repulsive interactions. If Lσ(L, .) is much less than one, then the polarizability is proportional to L³. If the term Lσ(L, .) is much larger than one, the polarizability scales as L². The induced dipole moment saturates and its value is the same as that of Mandel-Manning theories. The onset of the saturation, however, depends critically on the direct correlation function and hence polyelectrolyte effects. In the formalism, the polarization of the counterions is the equilibrium response to an electric field provided E is less than E_saturated. A dynamical scheme that incorporates the fact that in high fields the bound counterions conduct is discussed. © 1996 John Wiley & Sons, Inc.     

A simple thermodynamic model of the liquid-ordered state and the interactions between phospholipids and cholesterol

A theoretical model is proposed to describe the heat capacity function and the phase behavior of binary mixtures of phospholipids and cholesterol. The central idea is that the liquid-ordered state (L_o) is a thermodynamic state or an ensemble of conformations of the phospholipid, characterized by enthalpy and entropy functions that are intermediate between those of the solid and the liquid-disordered (L_d) states. The values of those thermodynamic functions are such that the L_o state is not appreciably populated in the pure phospholipid, at any temperature, because either the solid or the L_d state have much lower free energies. Cholesterol stabilizes the L_o state by nearest-neighbor interactions, giving rise to the appearance of the L_o phase. The model is studied by Monte Carlo simulations on a lattice with nearest-neighbor interactions, which are derived from experiment as much as possible. The calculated heat capacity function closely resembles that obtained by calorimetry. The phase behavior produced by the model is also in agreement with experimental data. The simulations indicate that separation between solid and L_o phases occurs below the melting temperature of the phospholipid (T_m). Above T_m, small L_d and L_o domains do exist, but there is no phase separation.     

Conserved amino acid networks involved in antibody variable domain interactions

Engineered antibodies are a large and growing class of protein therapeutics comprising both marketed products and many molecules in clinical trials in various disease indications. We investigated naturally conserved networks of amino acids that support antibody V_H and V_L function, with the goal of generating information to assist in the engineering of robust antibody or antibody‐like therapeutics. We generated a large and diverse sequence alignment of V‐class Ig‐folds, of which V_H and V_L domains are family members. To identify conserved amino acid networks, covariations between residues at all possible position pairs were quantified as correlation coefficients (?‐values). We provide rosters of the key conserved amino acid pairs in antibody V_H and V_L domains, for reference and use by the antibody research community. The majority of the most strongly conserved amino acid pairs in V_H and V_L are at or adjacent to the V_H–V_L interface suggesting that the ability to heterodimerize is a constraining feature of antibody evolution. For the V_H domain, but not the V_L domain, residue pairs at the variable‐constant domain interface (V_H–C_H1 interface) are also strongly conserved. The same network of conserved V_H positions involved in interactions with both the V_L and C_H1 domains is found in camelid V_HH domains, which have evolved to lack interactions with V_L and C_H1 domains in their mature structures; however, the amino acids at these positions are different, reflecting their different function. Overall, the data describe naturally occurring amino acid networks in antibody Fv regions that can be referenced when designing antibodies or antibody‐like fragments with the goal of improving their biophysical properties. Proteins 2009. © 2008 Wiley‐Liss, Inc.     

Oscillator strengths of the 1La and 1Lb absorption bands of tryptophan and several other indoles

The intensities of the indolyl ¹L_a and ¹L_b absorption bands were investigated by using 5-methoxyindole as a model compound. With 5-methoxyindole dissolved in weakly interacting solvents, almost the entire ¹L_b electronic transition occurs at longer wavelengths than the ¹L_a transition. The resolved spectrum of 5-methoxyindole permitted estimation of its oscillator strengths and also those of other indoles dissolved in cyclohexane: indole, 0.129 (¹L_a), 0.019 (¹L_b); 5-methylindole, 0.129 (¹L_a), 0.027 (¹L_b); 5-methoxyindole, 0.138 (¹L_a), 0.045 (¹L_b); 3-methylindole and N-stearyl-L -tryptophan n-hexyl ester, 0.127 (¹L_a), 0.027 (¹L_b). Hydrogen bonding to 1-methyl-2-pyrrolidinone does not measurably affect the total near-ultraviolet oscillator strength of indoles (less than 5% change). In water and ethanol, the oscillator strength of 3-methylindole and tryptophan is 15–20% less than that of 3-methylindole dissolved in cyclohexane. The spectra of the N-stearyl n-hexyl esters of tryptophan and 1-methyltryptophan dissolved in methylcyclohexane can be generated by using ¹L_a and ¹L_b bands having shapes similar to those observed for 5-methoxyindole, if the ¹L_a and ¹L_b bands are shifted so that their O-O bands overlap (289.5 nm for tryptophan and 299.5 nm for 1-methyltryptophan).     

Population biology and assessment of the white-spotted spinefoot, Siganus canaliculatus (Park, 1797), in the southern Arabian Gulf

The age, growth, mortality, reproduction and resource status of Siganus canaliculatus in the southern Arabian Gulf were investigated using a combination of size frequency, biological and size‐at‐age data. Defined structural increments consisting of alternating translucent and opaque bands in transverse sections of sagittal otoliths were validated as annuli. The maximum absolute age estimate was 7.8 years. Parameter values of the von Bertalanffy growth function fit to size‐at‐age data (males and females combined) were: k = 1.0, L_∞ = 24.8 cm (L_F), t_o = −0.1 years. Fish in spawning condition were only observed between April and July although patterns in gonadosomatic indices suggested a second but less well defined spawning event in November. The mean sizes and ages at first sexual maturity were 21.5 cm L_F (1.9 years) for males and 25.7 cm L_F (2.1 years) for females. Fish were fully recruited to the fishery at a size (L₁₀₀ = 19.7 cm L_F) that was smaller than the sizes at which sexual maturity was attained. The annual instantaneous rate of fishing mortality (F = 0.85 year⁻¹) (0.26–1.44 year⁻¹ 95% CI) was considerably greater than the target (F_opt = 0.33 year⁻¹) and limit (F_limit = 0.44 year⁻¹) biological reference points, indicating that the stock is overexploited.     

Genetic analysis for main length ratio associated with morphological traits in Japanese flounder Paralichthys olivaceus

The objective of this study was to estimate genetic parameters of main length ratios associated with morphological traits in Paralichthys olivaceus. At 180, 240 and 360 days of age, body length (L₁), head length (L₂), body depth (L₃), caudal peduncle depth (L₄) and caudal‐peduncle length (L₅) were observed in 4757–5224 individuals from 52 full‐sib families. Based on these observed traits, the main length‐ratio traits including L₃:L₁, L₂:L₁, L₅:L₁ and L₄:L₃ were constructed. Three single‐trait animal models were used to examine the phenotypic variation of length‐ratio traits and were compared using the likelihood ratio test. As a result, the optimal model for all the analysed traits was determined as the model with the fixed, additive genetic and full‐sib family effects. Using the optimal model, animal model analysis for single trait showed that heritabilities were estimated to be low, ranging from 0·122 to 0·276. The estimates for all length‐ratio traits decreased while the days of age increased except for L₃:L₁. Multivariate animal model analysis indicated that within and among days of age, genetic correlations between length‐ratio traits were different in the direction and magnitude. Genetic parameter estimation of main length ratios would be helpful for genetic improvement of body shape in P. olivaceus.     

Purification and characterization of laccase-1 fromPleurotus florida

Pleurotus florida (ITCC 3308) produces two laccase enzymes (L₁ and L₂) in potato-dextrose media containing 0.5% yeast extract. Concentrated culture filtrate was separated on DEAE-Sephadex (A-50) column into two enzyme peaks, subsequently named L₁ and L₂. The L₁ enzyme has been purified to homogeneity by ion-exchange and gel-permeation chromatography. L₁ is a monomeric glycoprotein with a molar mass of 77 and 82 kDa as determined by SDS-PAGE and gelfiltration chromatography, respectively. The pI value of L₁ has been determined to be 4.1. The optimum reaction temperature of the enzyme is 50°C. TheK _m and some other kinetic parameters of L₁ have been determined. Cyanide and azide completely inhibit the enzyme activity. The enzyme was fully active in 1: 1 (V/V) buffer-chloroform for at least 2 h. Spectroscopic analysis revealed that the enzyme has four copper atoms, a type 1 copper, a type 2 copper and a type 3 binuclear copper.     

叶施NO对NaCl胁迫下红砂幼苗叶片和根系中氮代谢酶及营养物质的影响

以当年生红砂(Reaumuria soongorica)幼苗为材料,采用盆栽实验,考察叶面喷施不同浓度(0、0.01、0.10、0.25、0.50、1.00 mmol·L^-1)NO供体硝普钠 (SNP) 对NaCl(300 mmol·L^-1)胁迫下红砂根、叶中可溶性蛋白、游离氨基酸和硝态氮含量,以及谷氨酰胺合成酶(GS)、谷氨酸合酶(GOGAT)、硝酸还原酶(NR)活性的影响,并采用主成分分析和隶属函数法筛选NO对NaCl胁迫缓解效应的氮代谢指标和最佳NO浓度,以探讨外源NO对NaCl 胁迫下红砂缓解效应的氮代谢响应机制。结果表明：(1)在300 mmol·L^-1 NaCl胁迫处理下,红砂幼苗根、叶中可溶性蛋白、硝态氮含量以及GS、GOGAT、NR活性均比对照显著下降。(2)外源NO能显著提高盐胁迫下红砂叶、根中GS、GOGAT、NR活性和硝态氮含量,增加根中可溶性蛋白和游离氨基酸含量。(3)NR和GOGAT活性可用于评价NO对NaCl胁迫下红砂幼苗的缓解作用,外源NO(SNP)对红砂幼苗在NaCl胁迫下的缓解效果强弱表现为0.25 mmol·L^-1> 0.50 mmol·L^-1> 0.10 mmol·L^-1> 1.00 mmol·L^-1> 0.01 mmol·L^-1。研究发现,300 mmol·L^-1 NaCl胁迫显著抑制了红砂幼苗氮代谢,外源NO(SNP)有助于提高盐胁迫下红砂NR活性,加快硝态氮转化为铵态氮,促进红砂叶片和根中GS/GOGAT对转化物的同化,从而增强红砂幼苗的耐盐性,并以0.25 mmol·L^-1SNP处理时缓解作用最佳;NR和GOGAT活性可作为NO缓解盐胁迫的评价指标。     

Genetic and physiological evidence concerning the development of chemically sensitive voltage-dependent ionophores in L6 cells

The electrophysiological properties of a tissue culture muscle line, L₆, and a K⁺ resistant mutant (MK₁) derived from L₆ were determined to elucidate certain aspects of membrane differentiation and function. MK₁ was selected as a clone of myoblasts resistant to the toxic effects of 55 mM K⁺. The resting potentials of L₆ and MK₁ myoblasts and myotubes were K⁺ dependent and equal. The amplitudes of the action potentials were equal in normal medium, but 27.7 mM K⁺ interfered with or eliminated the ability of L₆ myotubes to produce action potentials. MK₁ myotubes produced nearly normal action potentials under these conditions. Thus, the K⁺ resistant myoblasts differentiate into myotubes which have an action potential generating mechanism much less sensitive to K⁺ than the normal mechanism. Also, both d-tubocurarine and α-bungarotoxin enhance the amplitude of the action potentials produced by L₆ myotubes in the presence of 27.7 mM K⁺; these compounds do not enhance the amplitude of the action potentials produced by MK₁ myotubes under the same conditions. It is proposed that as a consequence of differentiation a type of ionophore present in myoblasts becomes a voltage-dependent ionophore in myotubes. Furthermore, these voltage-dependent ionophores can be chemically sensitive.     

Life history of the symbiotically luminous cardinalfish Siphamia tubifer (Perciformes: Apogonidae)

Characteristics of the life history of the coral reef‐dwelling cardinalfish Siphamia tubifer, from Okinawa, Japan, were defined. A paternal mouthbrooder, S. tubifer, is unusual in forming a bioluminescent symbiosis with Photobacterium mandapamensis. The examined S. tubifer (n = 1273) ranged in size from 9·5 to 43·5 mm standard length (L_S), and the minimum size at sexual maturity was 22 mm L_S. The number of S. tubifer associated during the day among the spines of host urchins was 22·9 ± 16·1 (mean ± s.d .; Diadema setosum) and 3·6 ± 3·2 (Echinothrix calamaris). Diet consisted primarily of crustacean zooplankton. Batch fecundity (number of eggs; F_B) was related to L_S by the equations: males (fertilized eggs) F_B = 27·5L_S ? 189·46; females (eggs) F_B = 31·3L_S ? 392·63. Individual mass (M; g) as a function of L_S was described by the equation: . Growth, determined from otolith microstructure analysis, was described with the von Bertalanffy growth function with the following coefficients: L_∞ = 40·8 mm L_S, K = 0·026 day^?1 and t₀ = 23·25 days. Planktonic larval duration was estimated to be 30 days. The age of the oldest examined individual was 240 days. The light organ of S. tubifer, which harbours the symbiotic population of P. mandapamensis, increased linearly in diameter as S. tubifer L_S increased, and the bacterial population increased logarithmically with S. tubifer L_S. These characteristics indicate that once settled, S. tubifer grows quickly, reproduces early and typically survives much less than 1 year in Okinawa. These characteristics are generally similar to other small reef fishes but they indicate that S. tubifer experiences higher mortality.     

Analysis of the electrophoretic properties of double-stranded DNA and RNA in agarose gels at a finite voltage gradient

The electrophoretic mobilities of double-stranded (ds) DNAs and ds RNAs of various lenths, L, were measured in gels of 0.4–1.8% (w/v) agarose at a voltage gradient of 1.0 V/cm. Differences in the electrophoresis of ds DNA and ds RNA are presented and discussed. A general expression is derived that describes the electrophoretic mobility, M, of either type of ds nucleic acid as a function of the gel concentration and the nucleic acid length: M = M′₁(L/L₀)^?x ? M₂, where M′₁ and L₀ are constants, and x and M₂ depend on the agarose gel concentration. The results obtained by fitting our data with this equation are consistent with the mobilities of nucleic acids in a wide range of gel concentrations, including free electrophoresis in solution and electrophoresis in gles of high agarose concentration in which nuleic acids are expected to reptate through the gel matrix. Finally, various methods of plotting agarose gel electrophoresis data are discussed.     

Development and ossification of the feeding apparatus in the larvae of two co‐occurring species of kob (Sciaenidae), Argyrosomus japonicus and Argyrosomus inodorus,in South Africa

The teeth of the oral jaws of two sympatric species of Argyrosomus, Argyrosomus japonicus and Argyrosomus inodorus, found along the South African coast developed first on the premaxilla and then on the dentary of the lower jaw. Teeth were observed on the premaxilla of A. inodorus [head length (L_H) = 1·0 mm; notochord length (L_N) = 2·7 mm] at a smaller size than in A. japonicus (L_H = 1·2 mm; L_N = 4·7 mm). The ventral elements of the gill arches (hypo‐ and basibranchials) were not ossified by the end of preflexion. The fifth ceratobranchial began ossifying and possessed pharyngeal teeth by 1·2 mm L_H (L_N = 4·7 mm) in A. japonicus and 1·1 mm L_H (L_N = 3·2 mm) in A. inodorus. To complement the osteological data, stomach contents were also analysed as a proxy for feeding apparatus functionality. Prey were first present in the stomach of A. japonicus at 1·2 mm L_H (L_N = 4·7 mm) and only 22% of the stomachs contained no prey suggesting that A. japonicus is already actively foraging by preflexion. In comparison, 83% of the stomachs of A. inodorus contained no prey and a single prey item was present in the largest examined specimen (L_H = 1·6 mm; L_N = 5·4 mm). Elements of the feeding apparatus begin to ossify early during ontogeny. While the overall pattern of ossification is similar between the two species, A. japonicus may be able to begin feeding at smaller head lengths relative to A. inodorus in their nursery habitats.     

Isometric partitioning of hydraulic conductance between leaves and stems: balancing safety and efficiency in different growth forms and habitats

Recent advances in modelling the architecture and function of the plant hydraulic network have led to improvements in predicting and interpreting the consequences of functional trait variation on CO₂ uptake and water loss. We build upon one such model to make novel predictions for scaling of the total specific hydraulic conductance of leaves and shoots (k_L and k_SH, respectively) and variation in the partitioning of hydraulic conductance. Consistent with theory, we observed isometric (slope = 1) scaling between k_L and k_SH across several independently collected datasets and a lower ratio of k_L and k_SH, termed the leaf‐to‐shoot conductance ratio (C_LSCR), in arid environments and in woody species. Isometric scaling of k_L and k_SH supports the concept that hydraulic design is coordinated across the plant. We propose that C_LSCR is an important adaptive trait that represents the trade‐off between efficiency and safety at the scale of the whole plant.     

An <Emphasis Type="Italic">L</Emphasis><Subscript>1</Subscript>-regularized logistic model for detecting short-term neuronal interactions

Interactions among neurons are a key component of neural signal processing. Rich neural data sets potentially containing evidence of interactions can now be collected readily in the laboratory, but existing analysis methods are often not sufficiently sensitive and specific to reveal these interactions. Generalized linear models offer a platform for analyzing multi-electrode recordings of neuronal spike train data. Here we suggest an L ₁-regularized logistic regression model (L ₁ L method) to detect short-term (order of 3 ms) neuronal interactions. We estimate the parameters in this model using a coordinate descent algorithm, and determine the optimal tuning parameter using a Bayesian Information Criterion. Simulation studies show that in general the L ₁ L method has better sensitivities and specificities than those of the traditional shuffle-corrected cross-correlogram (covariogram) method. The L ₁ L method is able to detect excitatory interactions with both high sensitivity and specificity with reasonably large recordings, even when the magnitude of the interactions is small; similar results hold for inhibition given sufficiently high baseline firing rates. Our study also suggests that the false positives can be further removed by thresholding, because their magnitudes are typically smaller than true interactions. Simulations also show that the L ₁ L method is somewhat robust to partially observed networks. We apply the method to multi-electrode recordings collected in the monkey dorsal premotor cortex (PMd) while the animal prepares to make reaching arm movements. The results show that some neurons interact differently depending on task conditions. The stronger interactions detected with our L ₁ L method were also visible using the covariogram method.     

Decoupling Photocurrent Loss Mechanisms in Photovoltaic Cells Using Complementary Measurements of Exciton Diffusion

Significant work has been directed at measuring the exciton diffusion length (L_D) in organic semiconductors due to its significance in determining the performance of photovoltaic cells. Several techniques have been developed to measure L_D, often probing photoluminescence or charge carrier generation. Interestingly, in this study it is shown that when different techniques are compared, both the diffusive behavior of the exciton and active carrier recombination loss pathways can be decoupled. Here, a planar heterojunction device based on the donor–acceptor pairing of boron subphthalocyanine chloride‐C₆₀ is examined using photoluminescence quenching, photovoltage‐, and photocurrent‐based L_D measurement techniques. Photovoltage yields the device relevant L_D of both active materials as a function of forward bias subject to geminate recombination losses. These values are used to accurately predict the photocurrent as a function of voltage, suggesting geminate recombination is the dominant mechanism responsible for photocurrent loss. By combining these measurements with photocurrent and photoluminescence quenching, the intrinsic L_D, as well as the voltage‐dependent charge transfer state dissociation and charge collection efficiencies are quantitatively determined. The results of this work provide a method to decouple all relevant loss pathways during photoconversion, and establish the factors that can limit the performance of excitonic photovoltaic cells.     

Increase in urinary markers during the acute phase reflects the degree of chronic tubulointerstitial injury after ischemia-reperfusion renal injury

Context: Acute kidney injury (AKI) could lead to progressive chronic kidney disease (CKD). Objectives: To demonstrate that urinary markers in AKI are associated with the degree of persistent renal injury. Material and methods: Human L-FABP chromosomal transgenic (T_g) mice were subjected to ischemia-reperfusion (I/R) clamping renal pedicle for 20?min or 30?min. Kidneys were obtained at one and 40 days after I/R. Results: Urinary L-FABP, NGAL, Kim-1 and albumin levels increased during the acute phase and were significantly correlated with the degree of tubulointerstitial fibrosis during the chronic phase. Discussion and conclusion: These markers could detect higher risk of progression to CKD.     

Acute toxicity of tributyltin to encapsulated embryos of a marine gastropod

The marine gastropod Buccinanops globulosus is known to have high imposex incidence in areas moderately polluted by tributyltin (TBT). Acute toxicity was previously studied in adults but no information is known about embryonic intracapsular development. To estimate the potential effects of organotin pollution on the progeny of B. globulosus, acute toxicity tests were conducted on encapsulated and excapsulated pre-hatching embryos. The lethal median concentration estimated for 96?h (LC₅₀ 96?h) in B. globulosus excapsulated embryos was 196.70?µg?TBTCl?L^?1, while in encapsulated embryos it was 2951.28?µg?TBTCl?L^?1. The LC₅₀ 96?h was 15-fold higher for encapsulated embryos compared to excapsulated embryos, denoting egg capsule protection against pollutants from the external environment. Our results show that TBT pollution can have significant effects in molluscs other than the chronic effect of imposex.