Nesting bird species in sun coffee, pasture, and understory forest in southern Costa Rica

We investigated avian nest distribution and success in understoryforest, sun coffee plantations, and pasture in southern Costa Rica. Nestsearching occurred in plantations and forest in 1999 and 2000 and in pastures in2000. Nests were monitored until they failed or fledged young. Antbirds(Thamnophilidae) were the most common understory forest nesters and were notfound nesting in the plantations or pastures. Common nesting species in theplantations included Turdidae, Tyrannidae, Cardinalidae, and Thraupidae, many ofwhich are typical of forest edge/canopy or open, scrubby habitats. Two speciesassociated with forest interior, Henicorhina leucostictaand Buarremon brunneinucha, were found nesting in theplantations. Pastures supported similar types of nesting species as theplantations, with the exception of the forest-interior species. Daily mortalityrates (DMRs) for above-ground cup-nesting species in plantations and pastureswere similar to those for species nesting in forest at our site and a site inPanama. The results indicate that conversion from forest to pastures and suncoffee plantations diminishes nesting habitat for forest-interior species, whilenumerous forest edge/canopy species and open-country species are able to nest inthese agricultural land-cover types. As a group, species nesting in theplantations and pastures do not have unusually high nest mortality rates,although species-specific studies are lacking. Nesting species distributionsacross habitat types and DMRs at our study site may be influenced by the largeamount of forest in the landscape.     

Comparing forest structure and biodiversity on private and public land: secondary tropical dry forests in Costa Rica

Secondary forests constitute a substantial proportion of tropical forestlands. These forests occur on both public and private lands and different underlying environmental variables and management regimes may affect post‐abandonment successional processes and resultant forest structure and biodiversity. We examined whether differences in ownership led to differences in forest structure, tree diversity, and tree species composition across a gradient of soil fertility and forest age. We collected soil samples and surveyed all trees in 82 public and 66 private 0.1‐ha forest plots arrayed across forest age and soil gradients in Guanacaste, Costa Rica. We found that soil fertility appeared to drive the spatial structure of public vs. private ownership; public conservation lands appeared to be non‐randomly located on areas of lower soil fertility. On private lands, areas of crops/pasture appeared to be non‐randomly located on higher soil fertility areas while forests occupied areas of lower soil fertility. We found that forest structure and tree species diversity did not differ significantly between public and private ownership. However, public and private forests differed in tree species composition: 11 percent were more prevalent in public forest and 7 percent were more prevalent in private forest. Swietenia macrophylla, Cedrela odorata, and Astronium graveolens were more prevalent in public forests likely because public forests provide stronger protection for these highly prized timber species. Guazuma ulmifolia was the most abundant tree in private forests likely because this species is widely consumed and dispersed by cattle. Furthermore, some compositional differences appear to result from soil fertility differences due to non‐random placement of public and private land holdings with respect to soil fertility. Land ownership creates a distinctive species composition signature that is likely the result of differences in soil fertility and management between the ownership types. Both biophysical and social variables should be considered to advance understanding of tropical secondary forest structure and biodiversity.     

Richness of cultivable endophytic fungi along an altitudinal gradient in wet forests of Costa Rica

We collected various plant species along an altitudinal gradient ranging from 400 to 2900 m in tropical wet forests of Costa Rica, isolated the associated endophytic fungi, and performed bioinformatic analyses to determine whether changes in altitude are related to changes in their richness and community structure. We showed that the richness of endophytic fungi varied along the altitudinal gradient, being higher in the lowest stratum and decreasing as elevation increases. Each stratum presented a particular composition and diversity of endophytes, although the whole population was characterized by the presence of a few dominant and apparently ubiquitous species, coexisting with a number of less abundant species that presented a more limited host range. These results have important implications for better understanding the role of altitude on the distribution and composition of endophytic fungal populations in tropical forests, but also for maximizing the number and diversity of endophytic isolates in bioprospecting campaigns.     

The freshwater Copepoda (Crustacea) of Costa Rica with notes on some species

Sixteen species of Copepoda were recorded in this first detailed study of Costa Rican zooplankton. Two of these species are halophile. Notes are given on some of the species and their distribution. One new species found will be described elsewhere. The Costa Rican fauna resembles in composition the fauna of other Central American and Caribbean regions. Relatively few species were recorded. This is partly due to a low intensity of sampling but also to the paucity of lentic habitats. The occurrence of two circumtropical species of Mesocyclops is interesting.

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Résumé 16 espèces de Copépodes ont été inventoriées au cours d'une première étude détaillée du zooplankton dulcaquicole de Costa Rica. Deux des espèces trouvées sont halophiles. Des remarques sont faites a propos de quelques espèces et de leur répartition. Une nouvelle espèce est nouvelle — elle sera décrite par ailleurs. La fauna de Costa Rica ressemble par sa composition à celle des autres pays d'Amérique centrale et des îles caraibes. Relativement peu d'espèces sont notées. La faible intensité de l'échantillonnage mais aussi la pauvreté en habitats limniques en sont responsables. La présence de deux espèces circumtropicales de Mesocyclops est intéressante.

     

Soluble reactive phosphorus (SRP) transport and retention in tropical, rain forest streams draining a volcanic landscape in Costa Rica: in situ SRP amendment to streams and laboratory studies

Soluble reactive phosphorus (SRP) transport/retention was determined in two rain forest streams (Salto, Pantano) draining La Selva Biological Station, Costa Rica. There, SRP levels can be naturally high due to groundwater enriched by geothermal activity within the surfically dormant volcanic landscape, and subsequently discharged at ambient temperature. Combined field and laboratory approaches simulated high but natural geothermal SRP input with the objective of estimating the magnitude of amended SRP retention within high and low SRP settings and determining the underlying mechanisms of SRP retention. First, we examined short-term SRP retention/transport using combined SRP-conservative tracer additions at high natural in situ concentrations. Second, we attempted to observe a DIN response during SRP amendment as an indicator of biological uptake. Third, we determined SRP release/retention using laboratory sediment assays under control and biologically inhibited conditions. Short-term in situ tracer-SRP additions indicated retention in both naturally high and low SRP reaches. Retention of added SRP mass in Upper Salto (low SRP) was 17% (7.5 mg-P m⁻² h⁻¹), and 20% (10.9 mg-P m⁻² h⁻¹) in Lower Salto (high SRP). No DIN response in either nitrate or ammonium was observed. Laboratory assays using fresh Lower Salto sediments indicated SRP release (15.4 ± 5.9 μg-P g dry wt.⁻¹ h⁻¹), when incubated in filter sterilized Salto water at ambient P concentration, but retention when incubated in filter sterilized river water amended to 2.0 mg SRP l⁻¹ (233.2 ± 5.8 μg-P g dry wt.⁻¹ h⁻¹). SRP uptake/release was similar in both control- and biocide-treated sediments indicating predominantly abiotic retention. High SRP retention even under biologically saturated conditions, absence of a DIN response to amendment, patterns of desorption following amendment, and similar patterns of retention and release under control and biologically inhibited conditions all indicated predominantly abiotic P flux.     

Comparison of two sampling methods for biomonitoring using aquatic macroinvertebrates in the Dos Novillos River, Costa Rica

Benthic macroinvertebrates are the most commonly suggested group of organisms for freshwater biomonitoring and have been extensively studied in temperate areas. On the other hand, the methodology and theoretical background of biomonitoring have not yet been sufficiently adapted to tropical aquatic environments. The main focus of this study was the testing and comparison of two different collection methods in order to determine water quality and possible anthropogenic influences on the river Dos Novillos, Limón, Costa Rica. For the first method, aquatic invertebrates were collected for 120 min with a strainer, from different microhabitats, picked from the substrate and preserved directly in the field with 70% alcohol. For the second method, organic and inorganic materials, including benthic organisms, were gathered from different microhabitats with a D-shaped net for 10 min, with separation and sorting done in the laboratory. Results from five sampling campaigns showed that each sampling method differed in the composition of the fauna collected (Sørensen similarity index = 80%), although water quality categories obtained from the BMWP-CR index showed no differences between the two methods. The advantages and disadvantages of each method are discussed, and according to the results obtained from this study, further testing for an adequate methodology in tropical rivers is still necessary.     

Population structure and genetic diversity in four tropical tree species in Costa Rica

Despite intensified interest in conservation of tropical forests, knowledge of the population genetics of tropical forest trees remains limited. We used random amplified polymorphic DNA (RAPD) data to evaluate trends in genetic diversity and differentiation for four tropical tree species, Alchornea latifolia, Dendropanax arboreus, Inga thibaudiana and Protium glabrum . These species occur at contrasting population densities along an elevational gradient and we use RAPD and ecological data to examine natural levels of genetic diversity of each species, trends in genetic variability with population density and structure, genetic differentiation along the elevation gradient, and the relationship between genetic diversity and such factors as seed dispersal and pollination syndrome. At the distances we examined (plot distances ranging from 0.8 to 8.6 km) there was very little genetic structuring at any distance along the gradient. All four species exhibited levels of variation expected for spatial distribution, mating system and pollinator syndrome; greater than 96% of the genetic variation occurred within plots for Inga thibaudiana, Protium glabrum and Dendropanax arboreus. Alchornea latifolia only occurred in a single plot. The results of this study contribute to a growing database of genetic diversity data that can be utilized to make predictions about the effect of disturbance and subsequent reductions in population size on genetic variation and structure in tropical tree species.     

A new species of Paullinia (Sapindaceae) from Costa Rica

Paullinia fournieri, a new species from Costa Rica is described, illustrated, and its relationships to other species are discussed.     

Extensive land use and the logic of the latifundio: A case study in Guanacaste Province,Costa Rica

Traditional explanations of extensive land use on large unproductive estates in Latin American have failed to understand important aspects of the economic and political logic behind such enterprises. This article examines the reasons for the low productivity of cattle ranches over a period which spans the consolidation of haciendas in a frontier zone and their subsequent integration into the international beef market. The persistence of extensive land use in a modern export economy is explained as resulting from characteristics of the world beef market, local ecology, the Costa Rican credit and tax systems, and the social composition and political power of the landowning class.     

The soil C pool in different agroecosystems derived from the dry tropical forest of Guanacaste, Costa Rica

Inventories of soil C pools are still lacking from tropical sites. Our objective was to assess total C and N concentrations in the different mineral soil fractions down to 50 cm depth in relation to selected physical and chemical properties of 5 ecosystems at La Flor Sustainable Center in Guanacaste, Costa Rica. The ecosystems studied were a derived savanna with scattered trees, a gallery forest, an abandoned Mango indigofera L. plantation, a Citrus sp. plantation, and a Saccharum officinarum L. (sugarcane) plantation. Significant differences were found for the main fixed factor ecosystem for all variables analyzed (ANOVA). The TSC concentration was significantly higher in the sugarcane plantation compared to the rest of land use systems. The TSC concentration decreased significantly with increase in depth in all ecosystems and ranged from 20.3–38.3 to 4.3–20.9 g kg⁻¹ in the 0–10 and 40–50 cm depth, respectively. In all cases, the clay + silt fraction (<50 μm) contained the highest C concentration. N concentration (0–10 cm depth) at La Flor ranged from 0.32 to 0.19%, and decreased in the order sugarcane > Curatella savanna > Mango and Citrus plantations > gallery forest. A principal component analysis (PCA) performed with all variables studied showed that the ordination of land uses (ecosystems) in the factorial plane defined by the first two axes was significant (Monte Carlo permutation test, P < 0.0001). The highest TSC pool down to 50 cm depth was obtained in the sugarcane plantation (160 Mg C ha⁻¹) while less C was found in the rest of ecosystems, i.e. from 66 (gallery forest) to 80 Mg C ha⁻¹ (Curatella savanna). The TSC concentration obtained in the sugarcane plot is likely the result of the incorporation of surface residues into the soil that would have otherwise been lost through burning, which is the current practice in the region. Further studies on C stabilization in the clay fraction are thus needed to test the hypothesis of soil C enrichment due to residue management. Finally, trade-offs are to be considered for both preservation of the fragile dTf and the productivity of derived land uses that increases soil C at the same time.     

The occurrence of Frankia in tropical forest soils of Costa Rica

Infective and effective Frankia were shown to occur in five diverse tropical forest soils of Costa Rica. Results of a plant infection assay indicated that Frankia is a common component of the soil biota in low and high elevation, primary and secondary forest soils. This is the first report of Frankia in lowland tropical rainforests of the Americas. These results suggest either a nonsymbiotic population of soil Frankia, the presence of unknown actinorhizal host species, or an ability of Frankia to be dispersed over long distances.     

The Influence of Habitat Variables on Bird Communities in Forest Remnants in Costa Rica

This study examined the effects of forest structure (tree species richness, canopy height, percent canopy cover, understory density, tree density and DBH) and avian species traits (nest type and indicator list status) on the diversity, abundance and dissimilarity of bird communities in forest remnants and reforestation areas adjacent to Costa Rican banana plantations. Bird species richness and abundance were significantly related to tree species richness, canopy height and canopy cover in multiple linear regressions, the latter two forest structure variables being the best statistical predictors. Stratification of analyses by bird species indicator categories improved fits of regressions, because correlations with environmental variables differed in sign for different guilds of birds, a result likely to hold for other avifaunas. Analysis of avifauna dissimilarities among sites demonstrated that the species composition of bird communities was highly correlated with forest structure and tree species composition. Logistic regressions indicated that birds making protected (cavity, burrow, pendant, sphere and covered) nests were 2–6 times more likely to be present in the study avifauna than birds making open (cup, saucer, platform and scrape) nests and indicators of disturbed habitats were 11 times more likely to be present than indicators of primary forest. The forest structure data used were simple and inexpensive to collect, and data on avian traits were drawn from the literature. Thus, these methods could easily be replicated at other locations and would be valuable management aids and biodiversity assessment tools for conservation planning.     

Tree community diversity of lowland swamp forest in Northeast Costa Rica, and changes associated with controlled selective logging

In the Atlantic lowlands of Northeast Costa Rica, logging occurs in tracts of poorly drained wet forest ('swamp forest'), yet little is known about factors affecting swamp forest diversity or the potential for biodiversity retention during harvest. This paper quantitatively describes the species composition and diversity of the swamp forest habitat, and reports the immediate impact of controlled, selective logging on tree community diversity. Pentaclethra macroloba (Leguminosae), Carapa nicaraguensis (Meliaceae) and Pterocarpus officinalis (Leguminosae) accounted for >70% of the primary swamp forest basal area. Nevertheless, 225 species from 53 families with individuals 10cm dbh were encountered in 16.4 ha; most species had very low abundances. Gamma diversity is a component of overall swamp forest diversity. Extraction of 49.2m3ha–1 (5.5 trees ha–1) of timber from a 4ha plot reduced species richness by 14, supporting assertions that random mortality during logging can affect the distribution of rare species. However, tree community diversity as measured by rarefaction was not greatly affected by selective logging. Total post-logging stem recruitment over a 3-year period was greater in logged plots than in undisturbed plots; the recruitment of the ruderal species Ochroma lagopus (Bombacaceae) was the most clearly affected by logging. Any localized dominance by this species will be limited in space and time in a carefully managed forest. The results suggest that controlled selective logging can be consistent with biodiversity conservation, and complement protected areas in Northeast Costa Rica.     

A Model to Assess Restoration of Abandoned Pasture in Costa Rica Based on Soil Hydrologic Features and Forest Structure

An ecological functional assessment (EFA) was used on 10 southwest Costa Rica sites representing a chronosequence of formerly pastured lands to undisturbed tropical wet forest. Ecological functional assessment is a tool designed to assess wetland functions in the United States that was adapted to upland forests. Models to indicate characteristic soil hydrologic features and soil structure and aboveground spatial structure of habitat were used to examine the degree to which selected sites within the chronosequence approach the undisturbed condition of the natural forest. An index of the functional model for the maintenance of characteristic soil hydrologic features (such as infiltration, bulk density, etc.) showed that the 20‐year‐old secondary forest was at approximately 60% of the condition of the undisturbed sites, whereas active pasture was evaluated at approximately 20% of the reference undisturbed forest; 4‐ and 10‐year‐old sites were intermediate. The spatial structure of habitat model showed that 20‐year‐old secondary forest was approximately 50% of reference forest, whereas active pasture was approximately 10% of the condition of undisturbed forest; 4‐year‐old sites were evaluated at approximately 20% and 10‐year‐old sites at approximately 60% of the reference state. Overall the functional assessment process indicated that degraded tropical wet forest sites have recovered almost 60% of their functional qualities 10 years following pasture abandonment. These results indicate that EFA can be a useful technique for monitoring restoration programs in the tropics.     

Structure and floristics of secondary and old-growth forest stands in lowland Costa Rica

We characterized stand structure and floristic composition of woody life forms in three, 16–18 yr old secondary stands that regenerated after pasture abandonment, and three nearby old-growth stands of tropical rain forest in lowland Costa Rica. Basal area and stem density for each of four plant size classes (seedlings, saplings, treelets, trees) were similar among stand types, but density of adult canopy palms (individuals 10 cm DBH), was lower in the secondary stands. We estimate that 15% of the basal area of stems 10 cm DBH correspond to remnant trees in our secondary stands. The observed rapid woody regrowth compared to other published studies in the lowland neotropics, can be attributed to moderate land use and possibly, to the influence of nutrient-rich volcanic soils in the study area. Overall, plant species richness was lower in the secondary stands, but this difference was less pronounced in the smallest size classes (seedlings, saplings). Median percent similarity of all pairwise stand comparisons showed that floristic composition of saplings (stems 1 m tall and 5 cm DBH) was more similar between secondary and old-growth stands than for trees (stems 10 cm DBH). Because the potential value of secondary forests in conserving woody plant diversity appears highest for the young size classes, we suggest that further studies on floristic composition, especially those addressing the dynamics of the understory component, are needed to refine our understanding of the role of this natural resource in the maintenance of plant biodiversity in disturbed landscapes.     

哥斯达黎加外海夏季表层浮游动物种类组成及分布

根据2009年7—8月在东热带太平洋哥斯达黎加外海(4°30’—10°24’N、91°20’—100°00’W)进行茎柔鱼探捕调查期间采集的表层浮游动物资料,对其种类组成、生物量及其分布进行了分析。结果表明,调查海域,鉴定出腔肠动物8目10科17属23种;甲壳动物8目30科43属74种;毛颚动物1目1科1属4种;尾索动物3目3科5属5种;环节动物为1目3科5属6种;软体动物1目1科3属3种;其他浮游动物有头足类的幼体、鱼卵和仔稚鱼以及浮游幼虫。调查海域总生物量和丰度的平均值分别为(124.78±176.83)mg/m3和(848±1219)个/m3,生物量较大的类群主要是甲壳动物的桡足类和毛颚动物的箭虫类其中桡足类的丰度(727个/m3)为最高,其次为箭虫类(373个/m3);出现频率较高的为桡足类、箭虫类、长尾类、头足类和鱼类仔稚鱼。     

A taxonomic revision of Encyclia (Orchidaceae: Laeliinae) in Costa Rica

A taxonomic revision of Encyclia (Orchidaceae) in Costa Rica is presented. The taxonomic history of the genus and its phylogenetic position are discussed. Characters of vegetative and floral morphology are described and their taxonomic significance is discussed. The genus is treated as comprising nine species in the country and a key to species is provided. Each taxon is described on the basis of Costa Rican material, illustrated in a composite plate, and its distribution within the country is assessed. Distribution maps for all the taxa are given. Overall distribution, derivation of name, synonymy, notes on species ecology and diagnostic features are presented for each taxon. The names Encyclia tonduziana and Epidendrum mooreanum are typified. © 2012 The Linnean Society of London, Botanical Journal of the Linnean Society, 2012, 168 , 395–448.