高通量质谱法用于小鼠器官内源性肽的鉴定

内源性肽以细胞因子、生长激素、激素肽等形式在人体的内分泌、神经、细胞生长和生殖各个领域发挥功能。神经肽是一种内源性肽,与痛觉、睡眠、情绪、学习与记忆等生理活动相关,不但存在于脑部神经细胞,也存在于其他体液和器官内并发挥重要作用。目前对器官内源性肽的研究仍不足,尤其是其中的神经肽。文中应用液质联用串联质谱高通量鉴定胰腺、心脏、肝脏和肾脏中内源性肽的分布以及神经肽的种类。鉴定结果显示,在肝脏中内源性肽和神经肽的数目最多,而胰腺中最少;所鉴定到的内源性肽具有器官特异性,在4个器官中分别呈现不同的动态分布;4个器官中神经肽的LPV(最长肽变异体)数目差异较大,而且基因家族的分布也各不相同,比如胰腺中的神经肽多属于Glucagon家族,心脏中的神经肽分别属于ACBD7、Granins、PEBP等几个家族。鉴定结果将为疾病的机制研究和治疗药物的研发提供参考。     

免疫系统也合成和释放神经内分泌多肽

曾经认为,神经内分泌多肽是神经内分泌系统的内源性信息物质,但目前已确定其在免疫系统中也有合成与释放。自从１９８０年以来,已有２０余种垂体激素,下丘脑释放激素或其它神经肽在免疫系统中被发现。Ｔ淋巴细胞、Ｂ淋巴细胞、单核细胞、巨噬细胞、肥大细胞和多形核细胞中都能合成和释放神经内分泌多肽。与此同时,这些肽类物质在免疫系统中的释放调节及其功能意义的研究也十分活跃。     

神经肽的研究进展

<正> 神经肽研究已有长足的进展。五十年代研究了脑垂体所分泌的各种多肽激素,六十年代研究的重点转移到由下丘脑所形成的许多激素释放因子和释放激素抑制因子,七十年代发现脑啡肽及阿片样肽,近几年来在众多的胃肠激素中又发现大部分活性肽亦存在于脑组织,迄今已发现40余种。据晚近文献报道,这些多肽可能作为递质或激素参与人类脑功能,内分泌功能和消化功能等方     

昆虫神经肽研究进展

近年来鉴定了化学结构的昆虫神经肽数目呈快速上升趋势, 家蚕滞育激素和性信息素合成激活肽被分离纯化.三种近年出现的研究方法对寻找新型昆虫神经肽起到重要作用,已经成功地鉴定了数个新型神经肽.昆虫神经肽cDNA或基因组DNA克隆显示了新的结构信息和神经肽间的相互关系.     

蛋白质组学肽段鉴定可信度评价方法

蛋白质组学基于质谱数据鉴定肽段和蛋白质，从而给出基因表达的直接证据，帮助解析蛋白质的结构和功能，研究蛋白质与疾病的关系，提供靶向治疗方案，而这些都取决于鉴定的肽段和蛋白质的准确性。蛋白质组学常采用目标-诱饵库方法（target-decoy approach，TDA）对鉴定的肽段和蛋白质进行质量控制，并对其进行改进演化后应用到子类肽段（比如突变肽段和修饰肽段等）和交联肽段等特殊鉴定结果的可信度评价中。然而，TDA存在两个局限，即错误率估计值不够准确以及不能评价单个鉴定结果的可信度，经过TDA质量控制后的结果还需要进一步检验，因此领域内也提出了一系列其他方法（本文统称为Beyond-TDA方法），协同加强肽段的可信度评价。本文对数据依赖模式下采集的质谱数据肽段层面的TDA常规方法和特殊方法进行了综述，对Beyond-TDA方法进行了分类阐述，并总结了各种方法的优势与不足。     

蛋白质组研究中离子阱串联质谱数据搜库结果解释方法

基于离子阱串联质谱仪的鸟枪法是一种高通量的蛋白质鉴定方法。得到的数据一般使用软件SEQUEST搜索蛋白质序列数据库,得到肽段鉴定列表以及相应的打分。为了得到蛋白质鉴定列表,还需要进行肽段鉴定结果的过滤和假阳性率的计算,然后根据肽段鉴定结果组装蛋白质列表。这两个问题目前还没有很好地解决。对已有的方法进行总结和比较,可以给搜库结果解释方法的选择提供参考,对数据质量控制方法的改进也有所帮助。     

八肽胆囊收缩素在痛觉调制中的抗阿片作用及其机理分析

自1975年发现脑啡肽以来,十余年间已陆续发现了20多种阿片肽。在研究它们的功能中发现,内源性释放的阿片肽如果量大、持续时间长,也可引起与外源性注射吗啡相类似的耐受现象。这种现象提出一个值得研究的问题:体内是否具有内源性的抗阿片物质(AOS)与阿片肽相抗衡?在发现脑啡肽后不久,Terenius和Ungar等曾提出体内存在AOS的设想及初步的实验证据。我们实验室也从电针耐受的大鼠脑中提取出一种具有抗阿片活性的小肽。1985年,日本Kaneko等从牛脑中提纯了第一个抗阿片肽——血管紧张素II,此后国际上又陆续发现了十几种具有抗阿片活性的神经肽,它们多数是已知结构的神经肽,新发现其具有抗阿片功能,少数是新确定结构的小肽。近几年,关于抗阿片物质的研究已成为     

头足类神经肽研究进展

神经肽是一类由神经内分泌组织分泌的小分子多肽。近年来随着头足类的经济价值越来越受到人们的重视,其神经肽的研究也日趋深入。通过高效液相色谱分离纯化、质谱鉴定、免疫组化定位和分子克隆等技术方法发现神经肽对头足类的生殖调控等具有重要意义。本文就目前已发现的7类头足类神经肽的种类、分布、结构与功能进行了综述,同时,展示了目前头足类神经肽研究存在的问题,并对头足类神经肽的发展趋势和应用前景进行了展望。     

奶牛重要经济性状全基因组关联分析研究进展

产奶性状是奶牛最重要的生产性状,随着平衡育种理念的提出和发展,繁殖性状、体型性状、健康性状和长寿性等功能性状也逐渐被重视并纳入育种规划中。鉴定产奶性状和功能性状主效基因或遗传标记并将之应用于奶牛标记辅助选择可望加快遗传进展。随着高密度SNP标记的高通量检测技术的发展,全基因组关联分析已成为鉴定畜禽重要经济性状基因的重要途径。文章对奶牛产奶性状和功能性状全基因组关联分析研究进展进行综述。     

奶牛重要经济性状全基因组关联分析研究进展

产奶性状是奶牛最重要的生产性状, 随着平衡育种理念的提出和发展, 繁殖性状、体型性状、健康性状和长寿性等功能性状也逐渐被重视并纳入育种规划中。鉴定产奶性状和功能性状主效基因或遗传标记并将之应用于奶牛标记辅助选择可望加快遗传进展。随着高密度SNP标记的高通量检测技术的发展, 全基因组关联分析已成为鉴定畜禽重要经济性状基因的重要途径。文章对奶牛产奶性状和功能性状全基因组关联分析研究进展进行综述。     

High identification rates of endogenous neuropeptides from mouse brain

Mass spectrometry-based neuropeptidomics is one of the most powerful approaches for identification of endogenous neuropeptides in the brain. Until now, however, the identification rate of neuropeptides in neuropeptidomics is relatively low and this severely restricts insights into their biological function. In the present study, we developed a high accuracy mass spectrometry-based approach to enhance the identification rates of neuropeptides from brain tissue. Our integrated approach used mixing on column for loading aqueous and organic extracts to reduce the loss of peptides during sample treatment and used charge state-directed tandem mass spectrometry to increase the number of peptides subjected to high mass accuracy fragmentation. This approach allowed 206 peptides on average to be identified from a single mouse brain sample that was prepared using 15 μL of solutions per 1 mg of tissue. In total, we identified more than 500 endogenous peptides from mouse hypothalamus and whole brain samples. Our identification rate is about two to four times higher compared to previously reported studies conducted on mice or other species. The hydrophobic peptides, such as neuropeptide Y and galanin, could be presented and detected with hydrophilic peptides in the same LC-MS run, allowing a high coverage of peptide characterization over an organism. This will advance our understanding of the roles of diverse peptides and their links in the brain functions.     

Neuropeptides and the central regulation of body temperature during fever and hibernation

Neuropeptides, acting on structures within the central nervous system influence body temperature. Non-opioid peptides induce hypothermia usually, while opioid peptides are mostly hyperthermic. Neuropeptides exert their effect only when injected into specific brain areas.

Hypo- Or hyperthermic effect of neuropeptides may be either due to changes in threshold body temperatures for induction of thermoregulatory effectors or due to changes in hypothalamic thermosensitivity.

At the cellular level the opioid peptides also act differently than the non-opioid peptides. The opioid peptides mostly inhibit spontaneous neuronal firing, while the non-opioid peptides usually stimulate it. Neuropeptides exert their influence on all neurones in the hypothalamus, independently on their temperature characteristics.

Neuropeptides may play a role in the regulation of body temperature under stressful conditions and during fever or hibernation, in particular. Some neuropeptides, namely AVP, -MSH and ACTH, act as natural antipyretic substances by lowering the threshold for cold thermogenesis.

Neuropeptides also modulate food intake, reproduction and many other functions which are substantially changed during hibernation. There appears to be a correlation between the effect of peptides on the control of food intake and on the control of body temperature. Opioid peptides, which increase food intake, induce hyperthermia, while non-opioid peptides, which are appetite inhibiting, induce hypothermia. The exact role o neuropeptides in the regulation of body temperature, food intake and gonadal activity of hibernators remains unclear, however.     

Receptor for the pain modulatory neuropeptides FF and AF is an orphan G protein-coupled receptor

Opiate tolerance and dependence are major clinical and social problems. The anti-opiate neuropeptides FF and AF (NPFF and NPAF) have been implicated in pain modulation as well as in opioid tolerance and may play a critical role in this process, although their mechanism of action has remained unknown. Here we describe a cDNA encoding a novel neuropeptide Y-like human orphan G protein-coupled receptor (GPCR), referred to as HLWAR77 for which NPAF and NPFF have high affinity. Cells transiently or stably expressing HLWAR77 bind and respond in a concentration-dependent manner to NPAF and NPFF and are also weakly activated by FMRF-amide (Phe-Met-Arg-Phe-amide) and a variety of related peptides. The high affinity and potency of human NPFF and human NPAF for HLWAR77 strongly suggest that these are the cognate ligands for this receptor. Expression of HLWAR77 was demonstrated in brain regions associated with opiate activity, consistent with the pain-modulating activity of these peptides, whereas the expression in adipose tissue suggests other physiological and pathophysiological activities for FMRF-amide neuropeptides. The discovery that the anti-opiate neuropeptides are the endogenous ligands for HLWAR77 will aid in defining the physiological role(s) of these ligands and facilitate the identification of receptor agonists and antagonists.     

Neuropeptidomics strategies for specific and sensitive identification of endogenous peptides

A new approach using targeted sequence collections has been developed for identifying endogenous peptides. This approach enables a fast, specific, and sensitive identification of endogenous peptides. Three different sequence collections were constituted in this study to mimic the peptidomic samples: SwePep precursors, SwePep peptides, and SwePep predicted. The searches for neuropeptides performed against these three sequence collections were compared with searches performed against the entire mouse proteome, which is commonly used to identify neuropeptides. These four sequence collections were searched with both Mascot and X! Tandem. Evaluation of the sequence collections was achieved using a set of manually identified and previously verified peptides. By using the three new sequence collections, which more accurately mimic the sample, 3 times as many peptides were significantly identified, with a false-positive rate below 1%, in comparison with the mouse proteome. The new sequence collections were also used to identify previously uncharacterized peptides from brain tissue; 27 previously uncharacterized peptides and potentially bioactive neuropeptides were identified. These novel peptides are cleaved from the peptide precursors at sites that are characteristic for prohormone convertases, and some of them have post-translational modifications that are characteristic for neuropeptides. The targeted protein sequence collections for different species are publicly available for download from SwePep.     

Peptidomics of the larval Drosophila melanogaster central nervous system

Neuropeptides regulate most, if not all, biological processes in the animal kingdom, but only seven have been isolated and sequenced from Drosophila melanogaster. In analogy with the proteomics technology, where all proteins expressed in a cell or tissue are analyzed, the peptidomics approach aims at the simultaneous identification of the whole peptidome of a cell or tissue, i.e. all expressed peptides with their posttranslational modifications. Using nanoscale liquid chromatography combined with tandem mass spectrometry and data base mining, we analyzed the peptidome of the larval Drosophila central nervous system at the amino acid sequence level. We were able to provide biochemical evidence for the presence of 28 neuropeptides using an extract of only 50 larval Drosophila central nervous systems. Eighteen of these peptides are encoded in previously cloned or annotated precursor genes, although not all of them were predicted correctly. Eleven of these peptides were never purified before. Eight other peptides are entirely novel and are encoded in five different, not yet annotated genes. This neuropeptide expression profiling study also opens perspectives for other eukaryotic model systems, for which genome projects are completed or in progress.     

Peptidomics-based discovery of novel neuropeptides

Modern proteomic methodologies have significantly improved the possibilities of large-scale identification of proteins. However, these methodologies are limited by their inability to reliably detect endogenously expressed peptides. We describe a novel approach of combining sample preparation, comprising focused microwave irradiation and mass spectrometric peptide profiling that has enabled us to simultaneously detect more than 550 endogenous neuropeptides in 1 mg of hypothalamic extracts. Automatic switching tandem mass spectrometry and amino acid sequence determination of the peptides showed that they consist of both novel and previously described neuropeptides. The methodology includes virtual visualization of the peptides as two- and three-dimensional image maps. In addition, several novel and known post-translational modifications of the neuropeptides were identified. The peptidomic approach proved to be a powerful method for investigating endogenous peptides and their post-translational modifications in complex tissues such as the brain. It is anticipated that this approach will complement proteomic methods in the future.     

Mass spectral comparison of the neuropeptide complement of the stomatogastric ganglion and brain in the adult and embryonic lobster, Homarus americanus

Neuropeptides in the stomatogastric ganglion (STG) and the brain of adult and late embryonic Homarus americanus were compared using a multi-faceted mass spectral strategy. Overall, 29 neuropeptides from 10 families were identified in the brain and/or the STG of the lobster. Many of these neuropeptides are reported for the first time in the embryonic lobster. Neuropeptide extraction followed by liquid chromatography coupled to quadrupole-time-of-flight mass spectrometry enabled confident identification of 24 previously characterized peptides in the adult brain and 13 peptides in the embryonic brain. Two novel peptides (QDLDHVFLRFa and GPPSLRLRFa) were de novo sequenced. In addition, a comparison of adult to embryonic brains revealed the presence of an incompletely processed form of Cancer borealis tachykinin-related peptide 1a (CabTRP 1a, APSGFLGMRG) only in the embryonic brain. A comparison of adult to embryonic STGs revealed that QDLDHVFLRFa was present in the embryonic STG but absent in the adult STG, and CabTRP 1a exhibited the opposite trend. Relative quantification of neuropeptides in the STG revealed that three orcokinin family peptides (NFDEIDRSGFGF, NFDEIDRSGFGFV, and NFDEIDRSGFGFN), a B-type allatostatin (STNWSSLRSAWa), and an orcomyotropin-related peptide (FDAFTTGFGHS) exhibited higher signal intensities in the adult relative to the embryonic STG. RFamide (Arg-Phe-amide) family peptide (DTSTPALRLRFa), [Val¹]SIFamide (VYRKPPFNGSIFa), and orcokinin-related peptide (VYGPRDIANLY) were more intense in the embryonic STG spectra than in the adult STG spectra. Collectively, this study expands our current knowledge of the H. americanus neuropeptidome and highlights some intriguing expression differences that occur during development.     

Brain and gut neuropeptides in peripheral blood mononuclear cells

Neuropeptides, initially thought to be common features of gut and brain, are only synthesized in immune cells and modulate immune functions. The presence and possible functions of these peptides in immune cells in both physiological or pathological conditions have been investigated in our laboratory in the last years. Some of the data obtained are reviewed here, and future developments of the field are indicated.