Dispersal,kinship and inbreeding in an island population of the Great Tit

We investigated the kinship structure of an island population of the Great Tit (Parus major). Kinship of birds could be inferred by comparing their family trees. Dispersal was also studied to explain the observed pattern of kinship. On the island of Vlieland the tits breed in several wooded areas. Both males and females preferred to breed in their natal area; males did so more strongly than females. Hence gene flow between the areas is restricted. However, within the largest wooded area females showed random dispersal, while males showed a slight tendency to breed near their natal site. The degree of kinship of neighbouring birds is a suitable control group for the relatedness of partners that takes into account the effects of dispersal. In the largest wooded area, birds were on average equally related to their partner and to their neighbours. Moreover, the mean coefficient of kinship between male and female neighbours was equal to the average kinship in this part of the population. We conclude that mating is random with respect to kinship. There is no evidence for avoidance of inbreeding. It is unlikely that kin recognition plays an important role in the process of mate choice in this population of Great Tits. We suggest that ecological factors are the main causes for the observed patterns of dispersal and mating. On the island more female than male immigrants enter the population each year. Incidental data indicate an exchange of birds between the population studied and surrounding populations. Ancestries of immigrants are not known, and indeed a first analysis of all birds, including immigrants, showed that males were more closely related than females. However, differential immigration could not fully explain the observed difference in kinship. The presence of local adaptation in males is suggested as a possible additional cause.     

Estimation of genetic distances from human and mouse introns

Background  

Using genetic distances measured from exons, it has been observed that the mutation rate is not constant along mammalian chromosomes. Exons constitute only 1% of the human genome, however, and thus they cannot provide a complete picture of the mutational variation in the genome.     

A new species of Allium (Alliaceae) from Dalmatia,Croatia

Allium croaticum , a new species from the island of Vis in Central Dalmatia (Croatia) is described and illustrated. Its relationships with allied species belonging to the A. stamineum group (Allium section Codonoprasum) are discussed. It is a diploid species (2n = 16), colonizing calcareous screes and flowering in early summer. Its morphology, leaf anatomy, karyology, palynology, ecology and taxonomic position are examined. © 2008 The Linnean Society of London, Botanical Journal of the Linnean Society, 2008, 158 , 106–114.     

Overweight and fatness in Dalmatia, Croatia: comparison with the U.S. population reference

Subscapular skinfold, elbow breadth and upper arm indicators of nutritional status were studied in the population of Dalmatia in Croatia. Age- and sex-specific percentiles were obtained from 4373 subjects, 18 to 74 years of age, and compared to the U.S. NHANES I and II reference data. There were significant differences between these data sets in all studied variables. The results complement those reported previously for BMI and triceps skinfold and indicate that high prevalence of overweight in Dalmatians largely reflects their muscularity and skeletal robustness rather than excess body fatness. The findings suggest that the U.S. upper percentiles of BMI and skinfolds are inadequate for the assessment of excess body fatness in Dalmatian population. The obtained population-specific percentile distributions should be used provisionally as the reference data for group comparisons in the Dalmatian region.     

Complex segregation analysis of body height,weight and BMI in pedigree data from Middle Dalmatia,Croatia

It has recently been reported that the mode of inheritance of body height, weight and BMI in five ethnically and geographically different populations can be described in terms of a major gene (MG) model. Here, using the pedigree sample from the island populations of Middle Dalmatia, Croatia (1,312 observed individuals in 462 pedigrees), the evidence is presented that supports the above findings. By applying the usual transmission probability tests, the hypothesis has been accepted that a significant part of the variation of each one of those three basic morphological traits can be attributed to the effect of a putative large-effect gene. The effect of a putative MG is responsible for 39-50% of age and sex adjusted trait's variation and for 34-48% of the total (non age-adjusted) variation of height, weight and BMI.     

Ancestral kinship and cancer in Lastovo Island, Croatia.

The aim of this study was to compute the average kinship coefficient of cancer cases in an extreme isolate (Lastovo Island, Croatia) and to compare it to the corresponding value for the island's unaffected population. Kinship estimates were obtained by Wright's path method (phi) based on pedigree reconstruction and Lasker's coefficient of relationship by isonymy (Ri) based on surname distribution. A total of 76 cancer cases were recorded on the island between 1971 and 1995. The unaffected control population of 1144 persons was obtained from the population census in 1971. The data on five ancestral generations were collected from parish registries preserved in the local church, and included 5484 persons born on the island between 1750 and 1970. Both Wright's path method and Lasker's isonymy method indicated significantly greater kinship of female cancer cases than of the unaffected population. Cancer cases with increased values of Ri among them and Ri among their ancestors included cancers of the ovary, colon, brain, breast, and prostate and leukemias. This study confirms the role of heredity and common ancestry in the development of cancer, providing a rough insight into their relative importance for specific cancer sites.     

Borings in mobile clasts from Eocene conglomerates of Northern Dalmatia (Coastal Dinarides, Croatia)

Summary Bored clasts occur in Eocene conglomerates deposited in the upper shoreface and beachface settings of the Dinaric foreland basin. The trace fossil assemblage consists ofGastrochaenolites, Trypanites, and possibly some other ichnotaxa and may be compared to theTrypanites Ichnofacies. The preservation characteristics of the borings reflect many stages of colonisation/boring and abrasion. The removal of shells of the boring bivalves, the different depths of the abrasional truncation of borings, and the predominant preservation of the largest excavations (Gastrochaenolites) in the ichnocoenosis are related to repeated phases of abrasion, caused by the mobility of clasts. Coastal gravel is a specific variant of hard substrates, whose mobility controls the colonisation of borers, the type of assemblage and its preservation potential.     

Stratigraphic framework, discontinuity surfaces, and regional significance of Campanian slope to ramp carbonates from central Dalmatia, Croatia

The sedimentology, microfacies, and stratigraphic age (from planktonic and benthic foraminifera and strontium-isotope stratigraphy) of a 300-m-thick Upper Cretaceous carbonate succession from the Island of ?iovo (central Dalmatia, Croatia) were analyzed in order to determine the lithostratigraphic, depositional, and chronostratigraphic framework. The Cretaceous strata were deposited in the southern part of the long-lasting (Late Triassic to Paleogene) Adriatic-Dinaridic Carbonate Platform (ADCP), one of a few late Mesozoic, intra-Tethyan, peri-Adriatic (sub)tropical archipelagos. The succession is separated by a firmground formational boundary into two lithostratigraphic units: the underlying Middle to Upper Campanian Dol Formation consisting of slope pelagic limestone with intercalated turbidites and debrites, and the overlying Upper Campanian ?iovo Formation composed of outer-ramp bioclastic-lithoclastic and echinoderm-dominated packstone. Age, lithology, and depositional settings of the ?iovo Formation are different from other penecontemporaneous, regionally important inner-platform carbonate successions within the ADCP domain. Therefore, the ?iovo Formation is proposed here as a new lithostratigraphic unit. Regionally important condensed intervals in the form of at least two firmground surfaces, characterized by Thalassinoides burrows (with phosphatic mineralization) that belong to the Glossifungites ichnofacies, occur in the lowermost part of the ?iovo Formation. Abrupt shallowing of depositional environments at the boundary between the Dol and the ?iovo Formation, and the generation of the formational boundary firmground, likely correlate with the regionally recorded Upper Campanian Event that represents a global eustatic sea-level fall. A regionally important subaerial exposure surface with nodular calcrete, rhizoliths, and Microcodium aggregates in the upper part of the ?iovo Formation represents a regional subaerial unconformity that was recorded across the ADCP domain and was interpreted as a consequence of diachronous and differential uplift of various parts of the platform in response to the formation of a forebulge in front of the approaching Dinaridic orogen.     

Individual phenotype, kinship, and the occurrence of inbreeding in song sparrows

Inbreeding load, a key parameter in evolutionary ecology, is frequently estimated by regressing fitness (or related traits) on inbreeding coefficient across population members. This approach assumes that inbreeding occurs randomly with respect to an individual's intrinsic ability to produce fit offspring; estimated loads might otherwise be biased by covariation between inbreeding and individual quality. This assumption, however, is rarely validated. We tested whether, in free-living song sparrows Melospiza melodia, an individual's observed kinship with its social mate (and hence the degree of inbreeding in which an individual participated) was correlated with specific phenotypic traits that are likely to indicate individual quality. Males (and to some extent females) that hatched earlier within their cohort, had shorter tarsi, bred earlier during their first year, or survived fewer years paired with more closely related mates and therefore produced relatively inbred offspring. These correlations arose because males with specific phenotypes were more closely related to the female population (and therefore more likely to pair with closer relatives under random pairing), and because males with specific phenotypes paired with closer relatives than expected. Such correlations could bias estimated inbreeding loads, and should be considered in quantitative genetic analyses of phenotypic variance in populations in which inbreeding occurs.     

Path analysis of familial resemblance in blood pressure in Middle Dalmatia,Croatia

The familial resemblance in blood pressure in Middle Dalmatia, Croatia, has been analyzed using the Path-analytic approach. The sample consisted of 1,126 examinees (526 males and 600 females, aged 17 to 87), inhabitants of the Middle Dalmatia's islands of Brac, Hvar, Korcula and the Peljesac peninsula. The Path analysis was performed with the assumption that each family member (father, mother, offspring 1 and 2) has a latent variable (C) that influences both the blood pressure values (P) and the morphological dimensions significantly correlated with blood pressure (Q). According to the estimates revealed from the most parsimonious models, the diastolic blood pressure has a more pronounced genetic component (h2 = 30-32%) than the systolic blood pressure (h2 = 15%). In contrast to the low intergenerational influences, the members of the same generation showed pronounced effects of shared environment. Common (non-transmitted) offsprings' environment (B) explains 44% of variance of the individual offspring's environment (C) in systolic and 33-35% in diastolic blood pressure. The correlation of father's and mother's environment (u2) was high in the case of diastolic blood pressure (33-44%) but for the systolic blood pressure it was not significantly different from zero. According to the presented results in insular/peninsular population of Middle Dalmatia, family resemblance of systolic and diastolic blood pressure differs. The resemblance is higher in diastolic blood pressure with stronger additive genetic component and stronger environmental and/or genetic component related with morphology. The sources of high heritability of diastolic blood pressure in Middle Dalmatia as well as the sources of high prevalence of hypertension in the same population are the phenomena that might be connected and thus deserve to be further explored in incoming analyses.     

Apolipoprotein H genetic variability in the population of Krk Island,Croatia

Apolipoprotein polymorphisms are emerging as suitable markers for the study of the formation of human populations. In contrast to the data available for apolipoprotein E, the data regarding apolipoprotein H (protein, apoH; gene, APOH) variations are only beginning to accumulate. By blood plasma isoelectric focusing and immunoblotting, we analyzed the distribution of apoH phenotypes in 397 individuals (192 males; 205 females) from seven villages of an autochthonous population of the eastern Adriatic island of Krk. APOH allele frequencies were: APOH*2 = 0.877, APOH*3 = 0.098, APOH*1 = 0.025, with the majority of the sample being homozygous. No significant differences between villages were observed. When these data were compared to those of other populations studied so far, a significant association between APOH allele frequencies and latitude was observed. We hypothesize that this association reflects differences in diet composition across different climatic zones.     

Group structure, kinship, inbreeding risk and habitual female dispersal in plural-breeding mammals

In most plural-breeding mammals, female group members are matrilineal relatives but, in a small number of species, all adult females are immigrants who are seldom closely related to each other. Some explanations of contrasts in female philopatry suggest that these differences are a consequence of variation in resource distribution and feeding competition, whereas others argue that they reflect variation in the risk of close inbreeding to philopatric females. However, neither explanation has been tested against quantitative comparisons. Here, we use quantitative comparisons and phylogenetic reconstructions to show that contrasts in female philopatry in plural breeders are associated with the risk that a female's father is reproductively active in her group when she starts to breed, supporting the suggestion that habitual female dispersal has evolved to minimize the risk of inbreeding.     

Pedigree analysis of the Turkish Arab horse population: structure,inbreeding and genetic variability

The aim of this study was to evaluate genetic variability in the Turkish Arab horse population using pedigree information. This study is the first detailed pedigree analysis of the breed in Turkey. Pedigree data were collected from the National Studbook. The pedigree data for 23 668 horses, born between 1904 and 2014, were used in the analysis. From this data set, a reference population (RP) of 14 838 animals symbolising the last generation was defined. Demographic parameters, the inbreeding level (F), the average relatedness (AR), the effective population size (N_e), the effective number of founders (f_e), the effective number of ancestors (f_a) and the number of founder genome equivalents (f_g) were calculated for the population. The average generation interval for the RP was 12.2±4.6 years, whereas the calculated pedigree completeness levels were 98.2%, 96.6% and 95.0% for the first, second and third known generations. The mean equivalent generations (t), the average complete generations and the mean maximum generations for the RP were 7.8, 5.4 and 12.2, respectively, whereas the meanFand AR were 4.6% and 9.5% for the RP. The rate of inbred animals was 94.2% for the RP, whereas the number of founders, the number of ancestors and thef_e,f_aandf_gwere 342, 223, 40, 22 and 9.6 for the RP. The large differences observed betweenf_e, and the number of founders demonstrates that genetic diversity decreased between the founder and the RP. Contribution of the 14 most influential founder to the RP was 50.0%, whereas just eight ancestral horses can account for 50% of the genetic variability.N_eestimated via an individual increase in inbreeding per generation (${\overline{N}}_{\text{e}}$), and paired increase in coancestry$\left(\text{}{\overline{N}}_{eC}\right)$, were 74.4±3.9 and 73.5±0.58, respectively. The inbreeding increases with the pedigree knowledge. In addition, the decrease in inbreeding in last years is more noticeable.     

Estimation of effective population sizes from data on genetic markers

The effective population size (Ne) is an important parameter in ecology, evolutionary biology and conservation biology. It is, however, notoriously difficult to estimate, mainly because of the highly stochastic nature of the processes of inbreeding and genetic drift for which Ne is usually defined and measured, and because of the many factors (such as time and spatial scales, systematic forces) confounding such processes. Many methods have been developed in the past three decades to estimate the current, past and ancient effective population sizes using different information extracted from some genetic markers in a sample of individuals. This paper reviews the methodologies proposed for estimating Ne from genetic data using information on heterozygosity excess, linkage disequilibrium, temporal changes in allele frequency, and pattern and amount of genetic variation within and between populations. For each methodology, I describe mainly the logic and genetic model on which it is based, the data required and information used, the interpretation of the estimate obtained, some results from applications to simulated or empirical datasets and future developments that are needed.