Zooplankton and salinity in the Rufiji River delta,Tanzania

A comparative analysis of the zooplankton from different salinities was carried out in the Rufiji River delta system, located on the mid Tanzanian coastline opposite Mafia Island (7° 45 S, 39° 20 W).Zooplankton samples were collected by vertical, oblique and horizontal surface tows (250 µm mesh) at three sites, namely at the river mouth (salinity = 20–25), in the estuary (salinity = 12–14), and in the upper reaches of the river (salinity = 0). Samples taken in the river mouth and estuary were collected at two times of the day, which coincided approximately with midday and sunset.A comparison of zooplankton diversity and abundance at the three sites showed that a much richer, more diverse fauna existed at the river mouth and estuary compared to the upper reaches. The zooplankton collected both at the mouth and in the estuary were very abundant at certain times of the day, although differences in faunal composition were found between the two sites.     

Study of the vegetation in the Multiple Use Natural Reserve of Monterrico (Guatemala)

The Multiple Use Natural Reserve of Monterrico lies on the Pacific coast of the southwest Guatemala in the Chiapas Sector of the Chiapaneca-Hondureña Province. It belongs to the Guatemalan System of Protected Areas and has a predominantly estuarine and coastal marine ecosystem. We took 218 vegetation relevés that contained 72 species belonging to 138 genera and 69 plant families. Multivariate analysis techniques have led to the determination of seven different associations. Three of them are mangrove swamp associations (Lagunculario-Rhizophoretum manglis; Lagunculario-Avicennietum germinantis Peinado, Alcaraz, Delgadillo, De la Cruz, Álvarez and Aguirre, 1994; Rhizophoretum manglis Cuatrecasas, 1958). Three new associations are proposed. These are one reed–bulrush association (Typho domingensis-Phragmitetum australisass. nova) and two sand-dwelling associations, one made up of evergreen grasses dominated by Canavalia rosea which grows on mobile dunes (Thephrosio-Canavalietum roseaeass. nova) and a dry forest phytocoenosis dominated by deciduous and some evergreen species, such as Pithecellobium dulce, that grow on more consolidated sandy soils (Gliricidio-Pithecellobietum dulcisass. nova). Finally, special mention must be made of the presence of the pleustohelophytic association Eichhornietum crassipedis Samek and Moncada, 1971. This is the first time that these mangrove swamp associations and this hydrophytic association have been recorded in Guatemala.     

Time scales of circulation and mixing processes of San Francisco Bay waters

Conceptual models for tidal period and low-frequency variations in sea level, currents, and mixing processes in the northern and southern reaches of San Francisco Bay describe the contrasting characteristics and dissimilar processes and rates in these embayments: The northern reach is a partially mixed estuary whereas the southern reach (South Bay) is a tidally oscillating lagoon with density-driven exchanges with the northern reach.The mixed semidiurnal tides are mixtures of progressive and standing waves. The relatively simple oscillations in South Bay are nearly standing waves, with energy propagating down the channels and dispersing into the broad shoal areas. The tides of the northern reach have the general properties of a progressive wave but are altered at the constriction of the embayments and gradually change in an upstream direction to a mixture of progressive and standing waves. The spring and neap variations of the tides are pronounced and cause fortnightly varying tidal currents that affect mixing and salinity stratification in the water column.Wind stress on the water surface, freshwater inflow, and tidal currents interacting with the complex bay configuration are the major local forcing mechanisms creating low-frequency variations in sea level and currents. These local forcing mechanisms drive the residual flows which, with tidal diffusion, control the water-replacement rates in the estuary. In the northern reach, the longitudinal density gradient drives an estuarine circulation in the channels, and the spatial variation in tidal amplitude creates a tidally-driven residual circulation. In contrast, South Bay exhibits a balance between wind-driven circulation and tidally-driven residual circulation for most of the year. During winter, however, there can be sufficient density variations to drive multilayer (2 to 3) flows in the channel of South Bay.Mixing models (that include both diffusive and dispersive processes) are based on time scales associated with salt variations at the boundaries and those associated with the local forcing mechanisms, while the spatial scales of variations are dependent upon the configuration of the embayments. In the northern reach, where the estuarine circulation is strong, the salt flux is carried by the mean advection of the mean salt field. Where large salinity gradients are present, the tidal correlation part of the salt flux is of the same order as the advective part. Our knowledge of mixing and exchange rates in South Bay is poor. As this embayment is nearly isohaline, the salt flux is dominated entirely by the mean advection of the mean salt field. During and after peaks in river discharge, water mixing becomes more dynamic, with a strong density-driven current creating a net exchange of both water mass and salt. These exchanges are stronger during neap tides.Residence times of the water masses vary seasonally and differ between reaches. In the northern reach, residence times are on the order of days for high winter river discharge and of months for summer periods. The residence times for South Bay are fairly long (on the order of several months) during summer, and typically shorter (less than a month) during winter when density-driven exchanges occur.     

Invasibility of four plant communities in the Llobregat delta (Catalonia, NE of Spain) in relation to their historical stability

Presence and cover of alien plants were analysed in relation to recent naturalness changes (1956–1999) in the Llobregat delta by means of GIS techniques and field surveys. Two land cover maps of 1956 and 1999 were generated by photo-interpretation of orthoimages and they were then reclassified into naturalness classes, defined as the degree of preservation of the pristine state. The resulting naturalness maps were combined in order to obtain a naturalness change map, which was used to design field sampling in four pristine communities: reedbeds, rushbeds, halophilous scrubs and fixed dune communities. Two study areas were selected for each community and three stability regimes (stable, semi-stable and non-stable) obtained from the naturalness change map. Five vegetation inventories were performed on average in each of these areas using the classical sigmatist method. Results showed a negative relationship between stability and invasibility, with several variations between communities. No alien species were found in stable areas of all communities. Alien species number, species percentage and relative cover increased from semi-stable to non-stable regimes in reedbeds and dune communities, indicating that reversion towards the climax reduces opportunities for alien establishment in these communities. In contrast, halophilous habitats such as rushbeds and scrubs did not exhibit significant differences between semi-stable and non-stable plots, probably because saline stress makes their invasion by alien plants difficult, even under disturbance.     

Structural properties of two types of mangrove stands on the northwestern coast of Sri Lanka

Mangrove stands in Puttalam lagoon and Dutch bay, two interconnected lagoons situated on the northwestern coast of Sri Lanka have been classified broadly into two groups, i.e., estuarine and island/mainland-fringing stands. Structural diversity of six mangrove stands, representing the two types was studied in terms of floristic composition, density, basal area, mean stand diameter, tree height, standing above-ground biomass and leaf-area index.Rhizophora mucronata andAvicennia marina were the dominant species. Higher mean stand diameters for the mangrove stands in Puttalam lagoon indicated greater maturity than the estuarine mangrove stands in Dutch bay. Nevertheless, estuarine stands in Dutch bay were structurally more complex (complexity indices 8.11–22.7) than the island/mainland-fringing mangrove stands (complexity indices 1.38–6.78). Higher number of species present in the estuarine mangrove stands is the major element that contributes to the higher values for the complexity indices for those stands. This appears to mask the contribution of stand-age to the complexity of a mangrove stand. Therefore complexity indices alone may not be used to explain adequately the structural diversity among mangrove stands.     

History and biogeography of the mangrove ecosystem,based on a critical reassessment of the paleontological record

The geological record of mangrove plants is based on comparablemorphological characteristics of pollen, fruits and wood, of fossil andmodern species. But this record relies on the assumption that the ecologicaland habitat preferences of ancestral taxa have remained similar throughages. A reexamination of fossil evidence of Avicennia, Pelliciera,Sonneratia, Rhizophora, Bruguiera, Ceriops, etc.reveals that the modern mangrove flora was pantropic by the Eocene, andappears to have originated during Paleocene times. Earlier Paleozoic andMesozoic candidates for a mangrove ecology lack conclusive evidence oftheir exclusive association with tidal environments. It is therefore clear thatcontinental drift had a limited role in the dispersal and development ofmodern mangrove floras. The Eocene/Oligocene boundary crisis appears toherald a beginning of the biogeographic split between the current-dayeastern and western provinces of mangrove plants. But, while the climaticorigins of this major disjunction is not clearly understood, our reassessmentof Tertiary paleoclimates suggests that the major cooling events of themiddle Paleocene, the end of the Eocene and the middle Pliocene were themost likely influences on the evolution of mangrove floras. The associatedinvertebrates, especially molluscs, further support our assertion that amodern mangrove ecosystem was established only during the earliestEocene times. We summarize our interpretation in a set of 9 palinspasticmaps of fossil mangrove genera through their evolution ending with thecurrent, bipartite distribution of present day taxa.     

A review on the present status and management of mangrove wetland habitat resources in Bangladesh with emphasis on mangrove fisheries and aquaculture

The mangrove forest of Bangladesh, the largest continuous mangrove bulk, is one of the most important features of the coastal area of the country. The existence of the mangrove has increased the values of other coastal and marine resources such as the coastal and marine fisheries by increasing productivity and supporting a wide biological diversity. The deltaic mangrove of Bangladesh is ecologically different from the other, mostly nondeltaic mangroves of the world and is unique also in its floral and faunal assemblage; therefore, a number of endangered plants and animals that are extinct from other parts of the world, are existing in Bangladesh mangrove. However, the mangrove has been under intensive pressure of exploitation for the last few decades which, in addition to direct clearance and conversion have placed the mangrove under extreme threat. Shrimp farming is the most destructive form of resource use the mangrove has been converted to, which contributed significantly to mangrove destruction with a corresponding loss of biological resources. Concerns have been raised among the ecologists, biologists, managers and policy makers since the early 1990s; deliberate destruction of mangrove and unplanned development of coastal aquaculture particularly shrimp aquaculture have been put under extreme criticism and the sustainability has been questioned. The present status of the mangrove resources including mangrove fisheries and aquaculture and management practices have been reviewed in this paper; impacts of different forms of human interventions and resource use have also been discussed. It is suggested that the management options and the policy aspects should be critically reviewed and amended accordingly; beneficiaries and stakeholders at all levels of resource exploitation must take part and contribute to conservation and management. An immediate need for mangrove conservation has been identified.     

Sources of organic carbon in mangrove sediments: variability and possible ecological implications

Mangrove sediments from three different mangrove ecosystems (Coringa Wildlife Sanctuary in the Godavari Delta, Andhra Pradesh, India, and Galle and Pambala, south-west Sri Lanka) were analysed for their organic carbon content, elemental ratios (C:N) and carbon stable isotope composition. Organic carbon content (0.6 – 31.7% dry weight), C/N ratios (7.0 – 27.3) and ¹³C (between –29.4 and –20.6) showed a wide range of values. Lower stocks of organic carbon coincided with low C/N (atom) ratios and less negative ¹³C values, indicating import of marine or estuarine particulate suspended matter. High organic carbon stocks coincided with high C/N ratios and ¹³C values close, but not equal, to those of the mangrove vegetation. The variations observed in this study and published literature data could be adequately described by a simple two-end mixing model, whereby marine/estuarine suspended matter and mangrove litter were taken as end members. Thus, while in some mangrove ecosystems or vegetation zones, organic carbon stocks can be very high and are almost entirely of mangrove origin, there also appear to be cases in which deposited estuarine or marine suspended matter is the dominant source of organic carbon and nitrogen in mangrove sediments. This situation is remarkably similar to that observed in temperate salt marsh ecosystems where the importance of local vascular plant production to the sediment organic carbon pool is equally variable. The observed high variability in organic matter origin is thought to have a major impact on the overall carbon dynamics in intertidal mangrove ecosystems.     

Incidence of heavy metals in the mangrove flora and sediments in Kerala, India

The mangroves of Kerala on the south-west coast of India are fast disappearing due to land reclamation and other anthropogenic disturbances. There are very few ecosystem level studies made in these much threatened biotopes in Kerala. The present study involves the measurement of heavy metals in the mangrove flora and sediments of three mangrove habitats along the Kerala coast. Sampling was carried out for a period of one year at bi-monthly intervals, with concentrations of Fe, Mn, Cu,Zn,Pb and Co analysed using atomic absorption spectrophotometry. An appreciable variation was observed in metal concentrations indifferent mangrove species. Cu, Zn and Pb were found to be in higher concentrations in Avicennia officinalis whereas higher levels of Fe, Mn and Co were observed in the species Barringtonia racemosa. The analysis of heavy metals indicated a high level of metal pollutants such as Fe, Cu, Zn and Pb in the mangrove habitats of Quilon and Veli compared to the relatively uncontaminated areas of Kumarakom. This revised version was published online in August 2006 with corrections to the Cover Date.     

The spring-time abundance and feeding ofEurytemora affinis (Poppe) in Volkerak-Zoommeer,a newly-created freshwater lake system in the Rhine delta (The Netherlands)

Eurytemora affinis, a calanoid copepod, has been encountered in Volkerak-Zoommeer (Rhine delta region, S.W. Netherlands) both before this lake system was isolated in 1987 from the estuarine influence, and after. It was the main particle-feeding crustacean at all the 3 sampling stations in March–April 1990 when it reached densities of up to 215 ind.l^–1. Its decline from mid April onwards, and low densities through summer, coincided with increase in cladocerans, especiallyDaphnia spp. (D. pulex andD. galeata), a decrease in seston (<33m) and chlorophyll concentrations and in primary production rates. The clearance rates (CR) ofEurytemora measured in the spring period varied enormously (0.6–24 ml.ind^–1.d^–1) depending mainly on size (0.44–1.06 mm), food concentration (0.8–2.2 mg C.l^–1), and the water temperature which varied only narrowly (8.0–9.0°C). Mean ingestion rates of the animals measuring 0.68±0.02 mm during the study was 6.7±3.2 gC.ind^–1.d^–1; and assimilation efficiency varied between 27 and 53% (mean: 41±9%). The weight specific CR (SCR) varied between 0.96 and 6.4 litre.mg^–1 body C.d^–1. Pooled regression of SCR on the animal's body weight at the 3 study stations revealed a significant inverse relationship. Also daily ration and specific assimilation ofE. affinis varied greatly and inversely with the body weight. This calanoid contributed from about 50 to 100% to the zooplankton community grazing rates and assimilation rates, the former often exceeding the phytoplankton primary production.     

Faunal impact on vegetation structure and ecosystem function in mangrove forests: A review

The last 20 years witnessed a real paradigm shift concerning the impact of biotic factors on ecosystem functions as well as on vegetation structure of mangrove forests. Before this small scientific revolution took place, structural aspects of mangrove forests were viewed to be the result of abiotic processes acting from the bottom-up, while, at ecosystem level, the outwelling hypothesis stated that mangroves primary production was removed via tidal action and carried to adjacent nearshore ecosystems where it fuelled detrital based food-webs. The sesarmid crabs were the first macrofaunal taxon to be considered a main actor in mangrove structuring processes, thanks to a number of studies carried out in the Indo-Pacific forests in the late 1970s and early 1980s. Following these classical papers, a number of studies on Sesarmidae feeding and burrowing ecology were carried out, which leave no doubts about the great importance of these herbivorous crabs in structuring and functioning Old world ecosystems. Although Sesarmidae are still considered very important in shaping mangrove structure and functioning, recent literature emphasizes the significance of other invertebrates. The Ocypodidae have now been shown to have the same role as Sesarmidae in terms of retention of forest products and organic matter processing in New world mangroves. In both New and Old world mangroves, crabs process large amounts of algal primary production, contribute consistently to retention of mangrove production and as ecosystem engineers, change particle size distribution and enhance soil aeration. Our understanding of the strong impact of gastropods, by means of high intake rates of mangrove products and differential consumption of propagules, has changed only recently. The role of insects must also be stressed. It is now clear that older techniques used to assess herbivory rates by insects strongly underestimate their impact, both in case of leaf eating and wood boring species and that herbivorous insects can potentially play a strong role in many aspects of mangrove ecology. Moreover, researchers only recently realized that ant–plant interactions may form an important contribution to our understanding of insect–plant dynamics in these habitats. Ants seem to be able to relieve mangroves from important herbivores such as many insects and sesarmid crabs. It thus seems likely that ants have positive effects on mangrove performance.     

Phenolic compounds and their anti-oxidative properties and protein kinase inhibition from the Chinese mangrove plant Laguncularia racemosa

Phenolic compounds, named integracin D (1), (7′R, 8′S, 8S)-8-hydroxyisoguaiacin (3), (2R, 3R) pinobanksin-3-caffeoylate (5) and threo-8S-7-methoxysyringylglycerol (6), respectively, were isolated from the Chinese mangrove plant Laguncularia racemosa (L) Gaertn. f. (Combretaceae), together with 23 known phenolic metabolites. Their structures were elucidated on the basis of extensive spectroscopic analyses including that of IR, UV, MS, CD, 1D and 2D NMR spectra as well as by comparison with literature data. Compound 5 showed significant anti-oxidative activity in the DPPH and TEAC free-radical-scavenging assays, while several of the phenolic compounds were tested for protein kinase inhibitory activity in an assay involving 24 different human tumor related protein kinases. Compounds 5, 7, and 23 showed potential inhibition with IC₅₀ values between 2.2 and 3.6 μg/mL toward individual kinases. The ellagic acid derivatives were tested for insecticidal activity.     

Sphingolipids in human lens membranes: an update on their composition and possible biological implications

The unique nature of the most abundant phospholipids in human lens membranes remained overlooked until the 1990s when it was possible to discern dihydrosphingomyelins (DHSMs) from the more common sphingomyelins (SMs). Unlike in other mammalian membranes, DHSMs comprise nearly half of the phospholipids in adult human lenses. Compared to SMs with a trans double bond between carbons 4 and 5 of the sphingoid backbone, the absence of this unsaturation site in DHSMs allows the participation of the OH group on C3 in intermolecular H-bonds and leads to stronger interlipid interactions with both neighboring DHSMs and cholesterol. Phospholipid compositional changes with age and lens region observed in mammals with various life spans and lens growth rates, suggest that the highest levels of DHSMs along with the lowest amounts of phosphatidylcholines and SMs are found in lenses with the lowest growth rate, namely human lenses. The participation of phospholipid metabolites in the control of mitosis and elongation of lens cells is plausible and deserves investigation.     

Disposition of trace elements in the mangrove ecosystem and their effects on Ucides cordatus (Linnaeus, 1763) (Crustacea,Decapoda)

BioMetals - The tropical mangrove at the Estação Ecológica do Lameirão (Southeastern Brazil), an ecosystem of high socio-economic value, receives a large load of pollutants from...     

The effects of diel changes in circulation and mixing on the longitudinal distribution of phytoplankton in a canyon‐shaped Mediterranean reservoir

1. The near‐surface distribution of phytoplankton cells along the thalweg of a canyon‐shaped reservoir (El Gergal, southern Spain) during two surveys is described and interpreted as the result of time‐varying large‐scale circulation patterns, vertical mixing processes and the physiological capacity of algal cells to regulate its position in the water column. 2. Vertical gradients of chlorophyll‐a concentration developed in the water column during the day but disappeared at night, as a result of the shoaling and deepening of the diurnal mixed layer (dml). The changes in the depth of the dml are largely controlled in El Gergal by convectively driven mixing processes. The longitudinal circulation changes, in turn, as a result of weak and diurnal land‐sea breezes. The distribution of algal cells was patchy at all times but did not change during any of the surveys. 3. An expression is proposed to estimate time scales for the development of horizontal patchiness T_P based on simple concepts of transport. It is shown that T_P is in the order of a week, indicating that horizontal patchiness does not respond immediately to hourly changes in the controlling factors. The magnitude of T_P, though, depends on how the vertical distribution of chlorophyll‐a and longitudinal currents change on subdiurnal time scales. In particular, T_P is sensitive to the lag existing between the momentum and heat fluxes through the free surface, driving circulation and vertical mixing.     

Influence of an ecosystem engineer,the emergent macrophyte Sparganium erectum,on seed trapping in lowland rivers and consequences for landform colonisation

1. Plant physical ecosystem engineers can influence vegetation population and community dynamics by modifying, maintaining or creating habitats. They may also have the potential to act upon biotic processes, such as seed dispersal. 2. Examples exist of reduction in seed dispersal distances in vegetated compared to unvegetated terrestrial environments, and concentration of seed deposits associated with plant patches. Such effects in aquatic environments have been little studied, but the engineering effect of plant patches on patterns of flow velocity and sediment deposition in streams suggests that they may play a similar role. 3. In this study, we assess the potential of an emergent aquatic species, Sparganium erectum, to play a role in physically modifying river habitats and trapping seeds by examining patterns of seed deposition and substrate type in 47 river reaches across England and southern Scotland, U.K. 4. Areas of the river channel within or adjacent to S. erectum patches harboured more plant seeds and more species than unvegetated areas and had finer, sandier substrates with higher organic matter, total nitrogen and total phosphorus content. Most seed species were competitive, indicating that they were well suited to colonise the competitive environment of an S. erectum patch, and could potentially further stabilise accumulated sediments and contribute to landform development. 5. We demonstrate that S. erectum patches influence both the physical environment and the retention of seeds, in consistent patterns across the channel bed, for a range of lowland rivers that vary in stream power and geology and which can be expected to vary in levels of supply of fine sediment and seeds. 6. Our findings support the hypothesis that the fundamental influence of a riverine ecosystem‐engineering species on slowing fluid flow links the habitat creation process of sediment sorting and retention to seed trapping. We suggest the process is applicable to a wide range of aquatic and riparian vegetation. We also suggest that the mono‐specific and competitive growth, which is typical of these engineering species, will strongly influence the recruitment of trapped seeds.     

Characterization of 24 microsatellite loci in delta smelt, Hypomesus transpacificus, and their cross-species amplification in two other smelt species of the Osmeridae family

We characterized 24 polymorphic tetranucleotide microsatellite loci for delta smelt (Hypomesus transpacificus) endemic to the San Francisco Bay Estuary, CA, USA. Screening of samples (n = 30) yielded two to 26 alleles per locus with observed levels of heterozygosity ranging from 0.17 to 1.0. Only one locus deviated from Hardy–Weinberg equilibrium, suggesting these individuals originate from a single panmictic population. Linkage disequilibrium was found in two pairs of loci after excluding the locus out of Hardy–Weinberg equilibrium. Twenty‐two primer pairs cross‐amplified in wakasagi smelt (Hypomesus nipponensis), and 15 primer pairs cross‐amplified in longfin smelt (Spirinchus thaleichthys).     

Ribozymes of the hepatitis delta virus: recent findings on their structure, mechanism of catalysis and possible applications.

Although the delta ribozymes have been studied for more than ten years the most important information concerning their structure and mechanism of catalysis were only obtained very recently. The crystal structure of the genomic delta ribozyme turns out to be an excellent example of the extraordinary properties of RNA molecules to fold into uniquely compact structures. Details of the X-ray structure have greatly stimulated further studies on the folding of the ribozymes into functionally active molecules as well as on the mechanism of RNA catalysis. The ability of the delta ribozymes to carry out general acid-base catalysis by nucleotide side chains has been assumed in two proposed mechanisms of self-cleavage. Recently, considerable progress has been also made in characterizing the catalytic properties of trans-acting ribozyme variants that are potentially attractive tools in the strategy of directed RNA degradation.     

Dependence of phenanthrene dissipation in mangrove sediment on the distance to root surface of Kandelia obovata L

We explored the relationship between the distance from roots and rhizosphere-mediated phenanthrene (PHE) dissipation in planted mangrove sediment. A compartmentalized device (rhizobox) was used that separated root surface and four consecutive rhizosphere layers that extended 0-2, 2-4, 4-6, and >6 mm away from the root surface. Kandelia obovata L. Druce seedlings were grown for 4 months in sediment spiked with 10 mgkg(-1) PHE. PHE dissipation, microbial community structure and enzymatic activities at millimeter scale in the vicinity of plant roots were analyzed. Results indicated significant differences in PHE dissipation through the various layers in the planted rhizobox. PHE dissipation exhibited the most rapid loss in the 0-2 mm near-rhizosphere layer, the lowest in far-rhizosphere (>6 mm) layer. Microbial community structure as indicated by denaturing gradient gel electrophoresis (DGGE) profiles showed that special bacterial species and larger bacterial numbers were observed in near-rhizosphere layers. Depending on the distance to root surface, near-rhizosphere bacterial species and enzymatic activities were more abundant than root compartment and far-rhizosphere, resulting in rapid dissipation of PHE.     

Evolutionary patterns and processes in the genus Rosa (Rosaceae) and their implications for host-parasite co-evolution

The genus Rosa (Rosaceae) is a remarkable genus with respect to systematic biology. Multiple reproductive strategies ranging from apomixis to outcrossing including hybridisation, as well as different modes of character inheritance like matroclinal, paternal or sex unrelated ones. This complexity makes the genus a model in which simple concepts of radiation, speciation and taxonomy come to their limits. Analyses of the evolutionary patterns and processes in Rosa give clear evidence for the stochastic character of this specific evolutionary scenario.