Rapid Biomass Quality Determination of Corn Stover Using Near-Infrared Reflectance Spectroscopy

Near-infrared reflectance spectroscopy (NIRS) has been used extensively in the forage industry for rapid measurement of forage constituents and could be useful for determining quality of biomass feedstocks at the point of delivery. In previous work, we developed an assay that partitions feedstock carbohydrates based on their availability to be converted to fermentable sugars, including non-structural carbohydrates (C _N), biochemically available carbohydrates (C _B) with an associated first-order availability rate constant (k _B), and unavailable carbohydrates (C _U ). Additional quality parameters measured included neutral detergent lignin (NDL), total available carbohydrates (C _A), and total carbohydrates (C _T). We evaluated the variability of biomass quality parameters in a set of corn stover samples and developed calibration equations for determining parameter values using NIRS. Fifty-two corn stover samples harvested in Iowa and Wisconsin in 2005 and 2006 were analyzed using a high-throughput assay for determining feedstock quality for biochemical conversion. Non-structural carbohydrates ranged from 84 to 155?g?kg^?1 dry matter (DM); C _B ranged from 354 to 557?g?kg^?1 DM; k _B ranged from 0.199 to 0.330?h^?1; C _A ranged from 463 to 699?g?kg^?1 DM, and NDL ranged from 32 to 74?g?kg^?1 DM. Significant differences (P?<?0.0001) among samples were observed for all parameters, except k _B. Near-infrared reflectance spectroscopy calibration equations were developed for C _N, C _B, C _A, C _U , C _T, and NDL. It was not possible to generate a meaningful calibration equation for k _B. There is significant variability within the corn stover population for several key quality-related carbohydrate and lignin constituents which can be predicted reliably using NIRS.     

Reaction of cythchrome c with one-electron redox reagents. I. Reduction of ferricytochrome c by the hydrated electron produced by pulse radiolysis

Pulse radiolysis-kinetic spectrometry has been used to investigate the reaction of hydrated electrons with ferricytochrome c in dilute aqueous solution at pH 6.5–7.0. Time resolutions from 2·10^?7 to 1 s were employed. Transient spectra from 320 to 580 nm were characterized with a wavelength resolution of ±0.5 nm. 1 In neutral salt-free solution, k(ferricytochrome c+e^?_aq)=(6.0±0.9)·10¹⁰ M^?1·s^?1 and k(ferricytochrome c+H)=(1.2±0.2)·10¹⁰ M^?1·s^?1. The reaction of ferricytochrome c with hydrated electrons is sensitive to ionic strength; in 0.1 M NaClO₄, k(ferricytochrome c+e^?_aq)=(2.4±0.4)·10¹⁰ M^?1·s^?1. In contrast, k(ferricytochrome c+H) is insensitive to ionic strength. Time resolution of three spectral stages has been accomplished. The primary spectrum is the first observable spectrum detectable after irradiation and is formed in a second-order process. Its rate of formation is indisting-uishable from the rate of disappearance of the electron spectrum. The secondary spectrum is generated in a true first order intramolecular process, k(p→s)=(1.2±0.1)·10⁵ s^?1. The tertiary spectrum is also generated in a true first-order process, k(s→t)=(1.3±0.2)·10² s^?1. The specific rates of both transformations are independent of the wavelength of measurement. The tertiary spectrum, observable 50 ms after initial reaction and remaining unchanged thereafter for at least 1 s, shows that relaxed ferrocytochrome c is the only detectable product. This product is not autoxidizable, as expected for native reduced enzyme. It is more probable that the intramolecular changes responsible for the p→s and s→t spectral transformations involve the influence of conformational relaxation of ferrocytochrome c upon electronic energy states then that they are intramolecular transmission of reducing equivalents from primary sites of electron attachment.     

Kinetics of polymerization of deoxyhemoglobin S and mixtures of hemoglobin A and hemoglobin S at high hemoglobin concentrations

Transverse water proton relaxation times (T₂) have been measured as a function of time after deoxygenation of solutions containing hemoglobin S. The shortened T₂ values observed upon deoxygenation of hemoglobin S result from an increase in the correlation time (τ_c) of the water fraction irrotationally bound to deoxyhemoglobin S as it polymerizes. Therefore, the change in τ_c as a function of time after deoxygenation can be used to measure the rate of polymer formation. The change in τ_c observed is reasonably fit by the first-order equation τ = τ₀ (1 ? e^?kt) + τ_oxy. At a total hemoglobin concentration of approximately 300 mg/ml, the pseudo-first-order rate constant in a heterozygous AS sample is 25 times slower than in a homozygous S sample, k = 0.019 and 0.47 s^?1, respectively. Since the transit time for an erythrocyte in vivo is approximately 15 s, these results suggest that the heterozygous A/S erythrocyte would traverse the circulation and become reoxygenated before extensive polymerization and, therefore, cell sickling could occur. For the homozygous S/S erythrocyte, there is ample time for polymerization and for cell sickling during circulation.     

Formation of nonquasineutral vortex plasma structures with a zero net current

A nonquasineutral vortex structure with a zero net current is described that arises as a result of electron drift in crossed magnetic and electric fields, the latter being produced by charge separation on a spatial scale of about the magnetic Debye radius r _B = |B|/(4πen _e ). In such a structure with a radius of r ～ r _B , the magnetic field is maintained by a drift current on the order of the electron Alfvén current J _Ae = m _e c ³/(2e) and can become as strong as B ? m _e c ²/(er). Estimates show that, in a plasma with a density of n _e = 10²¹?10²³ cm^?3 and with nonzero electron vorticity driven by high-power laser radiation on a time scale on the order of θ _pe ^?1 , magnetic fields with a strength of B ～ 10⁸?10⁹ G are generated on micron and submicron scales. The system with closed current that is considered in the present paper can also serve as a model of hot spots in the channel of a Z-pinch.     

Highly active β-xylosidases of glycoside hydrolase family 43 operating on natural and artificial substrates

The hemicellulose xylan constitutes a major portion of plant biomass, a renewable feedstock available for conversion to biofuels and other bioproducts. β-xylosidase operates in the deconstruction of the polysaccharide to fermentable sugars. Glycoside hydrolase family 43 is recognized as a source of highly active β-xylosidases, some of which could have practical applications. The biochemical details of four GH43 β-xylosidases (those from Alkaliphilus metalliredigens QYMF, Bacillus pumilus, Bacillus subtilis subsp. subtilis str. 168, and Lactobacillus brevis ATCC 367) are examined here. Sedimentation equilibrium experiments indicate that the quaternary states of three of the enzymes are mixtures of monomers and homodimers (B. pumilus) or mixtures of homodimers and homotetramers (B. subtilis and L. brevis). k _cat and k _cat/K _m values of the four enzymes are higher for xylobiose than for xylotriose, suggesting that the enzyme active sites comprise two subsites, as has been demonstrated by the X-ray structures of other GH43 β-xylosidases. The K _i values for d-glucose (83.3–357 mM) and d-xylose (15.6–70.0 mM) of the four enzymes are moderately high. The four enzymes display good temperature (K _t ^0.5?～?45 °C) and pH stabilities (>4.6 to <10.3). At pH 6.0 and 25 °C, the enzyme from L. brevis ATCC 367 displays the highest reported k _cat and k _cat/K _m on natural substrates xylobiose (407 s^?1, 138 s^?1?mM^?1), xylotriose (235 s^?1, 80.8 s^?1?mM^?1), and xylotetraose (146 s^?1, 32.6 s^?1?mM^?1).     

Toxic effects of chlorpyrifos on the growth,hematology, and different organs histopathology of Nile tilapia,Oreochromis niloticus

Chlorpyrifos is a widely applied insecticide that permeates on most waterways and affects aquatic organisms. The growth performances, hematological and histological impacts on Nile tilapia, Oreochromis niloticus following a 60 day of exposure to varying concentrations of chlorpyrifos 20 EC (T₁ 08 µgL^?1, T₂ 16 µgL^?1, and T₃ 32 µgL^?1) were compared to a control T_c 0 µgL^?1. The 96-hour LC50 of chlorpyrifos 20 EC was calculated as 46.80 μgL^?1. The water quality parameters were recorded regularly. The value of dissolved O₂ and NH₃ stayed rather steady, although temperature varied considerably. It was revealed that as chlorpyrifos levels go up, the percentage of weight gain (WG %), specific growth rates (SGR), and survival rate decreases. The control group T_c had the highest percentages of SGR weight (1.16 ± 0.58) and the T₃ group had the lowest percentages of SGR weight (0.25 ± 0.77). The hematological assessment showed significant differences of hemoglobin concentration, white blood cell counts and red blood cell numbers between chlorpyrifos treatment and control group (P < 0.05). Histological alterations in the liver, gills, and muscle tissues reported to be worse for T₃ as compared to others. There were no statistical differences in GSI, HSI values between control and treatment groups. The chlorpyrifos 20 EC was shown to be highly toxic to O. niloticus at sub-lethal dosages.     

Localization of magnetized electrons in current filaments as a fundamental cause of Coulomb explosion

Mechanisms for generating current filaments in a dense plasma under the action of focused laser pulses and in a Z-pinch configuration are discussed. The main properties of current filaments with a zero and nonzero electron vorticity Ω _e =B?(c/e)?×p _e that originate at magnetic fields in the range 4πn _e m _e c²?B²?4πn _i m _i c² are investigated under the conditions of Coulomb explosion at currents below the ion Alfvén current. A study is made of the equilibrium configurations of nonquasineutral current filaments in a purely longitudinal (B_z) and a purely azimuthal (B_θ) magnetic field and also in a more general case of a helical magnetic field, having two components, under conditions such that the charge separation occurs on a spatial scale on the order of the magnetic Debye radius r_B ? |B|/(4πen_e. It is shown that strong electric fields generated in the current filaments are comparable in magnitude to the atomic field and are capable of accelerating ions to energies of several tens of megaelectronvolts. The ion dynamics in strong electric fields of the filaments is calculated numerically and is shown to lead to the formation of collisionless shock waves on time scales on the order of several inverse ion plasma frequencies ω _pi ^?1 . The possible formation of current filaments on different spatiotemporal scales is considered.     

Single-molecule measurements of dissociation rates and energy landscapes of binary trans snare complexes in parallel versus antiparallel orientation

Interactions between synaptobrevin 2 (Sb2) and syntaxin 1A (Sx1A) can be readily isolated and studied with the use of force spectroscopy single-molecule measurements. We studied interactions between Sx1A and Sb2 in two different orientations (parallel and antiparallel) using four different terminus configurations of these proteins. Force-loading experiments indicated that protein pairs in any configuration/orientation are zippered. We measured the extension and force for disassembly of these interactions, calculated the spontaneous dissociation lifetimes, and determined their free energies, enthalpies, and entropies. Although the free energies were very similar for all four configurations (∼28 k_BT (Eyring model) and ∼20 k_BT (Kramers model)), the enthalpy changes of binary Sx1A-Sb2 interactions varied between 24.7 k_BT and 33.1 k_BT. This variation is consistent with the conformation changes that occur during disassembly of the various protein terminus configurations, as verified by alterations in the extension. The parallel interactions appear to be energetically somewhat advantageous over antiparallel configurations/orientation, especially when the N-termini of Sx1A-Sb2 are left to interact freely.     

The Gaussian curvature elastic energy of intermediates in membrane fusion

The Gaussian curvature elastic energy contribution to the energy of membrane fusion intermediates has usually been neglected because the Gaussian curvature elastic modulus, κ, was unknown. It is now possible to measure κ for phospholipids that form bicontinuous inverted cubic (Q_II) phases. Here, it is shown that one can estimate κ for lipids that do not form Q_II phases by studying the phase behavior of lipid mixtures. The method is used to estimate κ for several lipid compositions in excess water. The values of κ are used to compute the curvature elastic energies of stalks and catenoidal fusion pores according to recent models. The Gaussian curvature elastic contribution is positive and similar in magnitude to the bending energy contribution: it increases the total curvature energy of all the fusion intermediates by 100 units of k_BT or more. It is important to note that this contribution makes the predicted intermediate energies compatible with observed lipid phase behavior in excess water. An order-of-magnitude fusion rate equation is used to estimate whether the predicted stalk energies are consistent with the observed rates of stalk-mediated processes in pure lipid systems. The current theory predicts a stalk energy that is slightly too large, by ∼30 k_BT, to rationalize the observed rates of stalk-mediated processes in phosphatidylethanolamine or N-monomethylated dioleoylphosphatidylethanolamine systems. Despite this discrepancy, the results show that models of fusion intermediate energy are accurate enough to make semiquantitative predictions about how proteins mediate biomembrane fusion. The same rate model shows that for proteins to drive biomembrane fusion at observed rates, they have to perform mediating functions corresponding to a reduction in the energy of a purely lipidic stalk by several tens of k_BT. By binding particular peptide sequences to the monolayer surface, proteins could lower fusion intermediate energies by altering the elastic constants of the patches of lipid monolayer that form the stalk. Here, it is shown that if peptide binding changes κ or some other combinations of local elastic constants by only tens of percents, the stalk energy and the energy of catenoidal fusion pores would decrease by tens of k_BT relative to the pure lipid value. This is comparable to the required mediating effect. The curvature energies of stalks and catenoidal fusion pores have almost the same dependence on monolayer elastic constants as the curvature energies of the rhombohedral and Q_II phases; respectively. The effects of isolated fusion-relevant peptides on the energies of these intermediates can be determined by studying the effects of the peptides on the stability of rhombohedral and Q_II phases.     

Nitrofuran induced mutagenesis and error prone repair in Escherichia coli

The binding of cis(c)- and trans(t)-Pt(NH₃)₂Cl₂ to DNA at platinum/DNA-nucleotide ratios (R_i) of 0.1 or less has been studied by means of radioactive ^195mPt-labeled compounds. Kinetic data are consistent with the following scheme:

At 25°C and pH 5–6 in 5 mM NaClO₄, the values for the rate constants in the above scheme for the c-isomer are k₂ = 2.2 × 10^?5 sec^?1, k₇ = 0.32 (sec M)^?1, and k₈ = 143 (sec M)^?1; for the t-isomer the values are k₂ < 0.5 × 10^?5 sec^?1 and k₇ = 0.95 (sec M)^?1. Platinum-DNA adducts do not undergo detectable exchange after 3 days at 37°C, indicating the absence of a dynamic equillibrium. For both isomers the rate of binding is the same for single- and double-stranded DNA. The conclusions derived from Ag⁺ and H⁺ titration studies are consistent with binding at guanine N(7) for R_i < 0.1. The reaction rate is competitively inhibited by various salts and buffers and is suppressed by raising the pH (50% inhibition of initial rates at pH 7.3). At 37°C and pH 7 in 0.15 M NaCl, 6–8% of both the c- and t-isomers bind to DNA in 24 h, suggesting that both compounds should bind to DNA under biological conditions.     

Photoinduced electron transfer in cytochrome bc1: Dynamics of rotation of the Iron-sulfur protein during bifurcated electron transfer from ubiquinol to cytochrome c1 and cytochrome bL

The electron transfer reactions within wild-type Rhodobacter sphaeroides cytochrome bc₁ (cyt bc₁) were studied using a binuclear ruthenium complex to rapidly photooxidize cyt c₁. When cyt c₁, the iron?sulfur center Fe₂S₂, and cyt b_H were reduced before the reaction, photooxidation of cyt c₁ led to electron transfer from Fe₂S₂ to cyt c₁ with a rate constant of k_a = 80,000 s^?1, followed by bifurcated reduction of both Fe₂S₂ and cyt b_L by QH₂ in the Q_o site with a rate constant of k₂ = 3000 s^?1. The resulting Q then traveled from the Q_o site to the Q_i site and oxidized one equivalent each of cyt b_L and cyt b_H with a rate constant of k₃ = 340 s^?1. The rate constant k_a was decreased in a nonlinear fashion by a factor of 53 as the viscosity was increased to 13.7. A mechanism that is consistent with the effect of viscosity involves rotational diffusion of the iron?sulfur protein from the b state with reduced Fe₂S₂ close to cyt b_L to one or more intermediate states, followed by rotation to the final c₁ state with Fe₂S₂ close to cyt c₁, and rapid electron transfer to cyt c₁.     

Effect of Chromium-Enriched Yeast on Fasting Plasma Glucose, Glycated Haemoglobin and Serum Lipid Levels in Patients with Type 2 Diabetes Mellitus Treated with Insulin

Chromium is required for a normal insulin function, and low levels have been linked with insulin resistance. The aim of this study was to follow the effect of chromium supplementation on fasting plasma glucose (FPG), glycated haemoglobin (HbA_1c) and serum lipids in patients with type 2 diabetes mellitus (DM2) on insulin therapy. Eleven randomly selected patients with DM2 on insulin therapy were supplemented with a daily dose of 100 μg chromium yeast for the first supplementation period of 2 weeks. In the second supplementation period, the chromium dose was doubled and continued for the next 6 weeks. The third phase was a 6-week washout period. After each period, the levels of FPG and HbA_1c were compared with the corresponding values at the end of the previous period. Serum triglycerides, total HDL and LDL cholesterol values after supplementation were compared with the baseline values. FPG decreased significantly after the first period of chromium supplementation (p?<?0.001), and a tendency to a further reduction was observed after the second supplementation period. Similarly, HbA_1c decreased significantly in both periods (p?<?0.02 and p?<?0.002, respectively). Eight weeks after withdrawal of chromium supplementation, both FPG and HbA_1c levels returned to their pre-intervention values. The serum lipid concentrations were not significantly influenced by chromium supplementation. Chromium supplementation could be beneficial in patients with DM2 treated with insulin, most likely due to lowered insulin resistance leading to improved glucose tolerance. This finding needs to be confirmed in a larger study.     

Experimental evidence for membrane-mediated protein-protein interaction

Membrane proteins diffuse within the membrane, form oligomers and supramolecular assemblies. Using high-speed atomic force microscopy, we present direct experimental measure of an in-membrane-plane interaction potential between membrane proteins. In purple membranes, ATP-synthase c-rings formed dimers that temporarily dissociated. C-ring dimers revealed subdiffusive motion, while dissociated monomers diffused freely. C-rings center-to-center distance probability distribution allowed the calculation and modeling of an in-membrane-plane energy landscape that presented repulsion at 80 Å, most stable dimer association at 103 Å (−3.5 k_BT strength), and dissociation at 125 Å (−1 k_BT strength). This first experimental data of nonlabeled membrane protein diffusion and the corresponding in-membrane-plane interaction energy landscape characterized membrane protein interaction with an attractive range of several k_BT that reaches to a radius of ∼50 Å within the membrane plane.     

Structural Effects and Translocation of Doxorubicin in a DPPC/Chol Bilayer: The Role of Cholesterol

We use molecular dynamics simulations to characterize the influence of cholesterol (Chol) on the interaction between the anticancer drug doxorubicin (DOX) and a dipalmitoyl phosphatidylcholine/Chol lipid bilayer. We calculate the potential of mean force, which gives us an estimate of the free energy barrier for DOX translocation across the membrane. We find free energy barriers of 23.1 ± 3.1 k_BT, 36.8 ± 5.1 k_BT, and 54.5 ± 4.7 k_BT for systems composed of 0%, 15%, and 30% Chol, respectively. Our predictions agree with Arrhenius activation energies from experiments using phospholipid membranes, including 20 k_BT for 0% Chol and 37.2 k_BT for 20% Chol. The location of the free energy barrier for translocation across the bilayer is dependent on composition. As Chol concentration increases, this barrier changes from the release of DOX into the water to flip-flop over the membrane center. The drug greatly affects local membrane structure by attracting dipalmitoyl phosphatidylcholine headgroups, curving the membrane, and allowing water penetration. Despite its hydrophobicity, DOX facilitates water transport via its polar groups.     

Nicotinamide adenine dinucleotide (NAD+). Formal potential of the NAD+/NAD· couple and NAD· dimerization rate

The rate constant, k_d, for the dimerization of the free radical (NAD^·), produced on the initial one-electron reduction of NAD⁺, was measured by double potential-step chronoamperometry, fast-scan cyclic voltammetry (cathodic-anodic peak current ratio) and slow-scan cyclic voltammetry (peak potential shift) for a medium in which neither NAD⁺ nor its reduction products are adsorbed at the solution/electrode interface. All three methods give concordant values of k_d (approx. 3·10⁷ M^?1·s^?1), which are in reasonable accord with the values determined by pulse radiolysis but are considerably greater than values previously determined electrochemically. For the NAD⁺/NAD^· couple, the heterogeneous rate constant (k_s,h) exceeds 1 cm·s^?1 at 25°C and the formal potential (E⁰_c) vs. sce is ? 1.155 V at 25°C and ? 1.149 V at 1°C at pH 9.1, with an uncertainty of about ±0.005 V.     

Kinetics of some electron-transfer reactions in biological photosystems. I. Pulse radiolysis study of spinach ferredoxin reduction by the hydrated electron and CO−2 radical

The reduction of spinach ferredoxin by the CO^?₂ radical and the hydrated electron (e^?_aq) has been studied by pulse radiolysis in the pH range between 5.05 and 9.67. The reduction of oxidized spinach ferredoxin by both CO^?₂ and e^?_aq was found to be essentially quantitative. The CO^?₂ radical reduces spinach ferredoxin by a single second-order process at a rate k₅ = (6.2 ± 0.6) · 10⁷ M^?1 · s^?1. Reduction by e^?_aq follows a biphasic pathway. The first phase obeys second-order kinetics for the reduction of the cluster, k_app = (9.4 ± 0.3) · 10⁹ M^?1 · s^?1. The second phase follows an intramolecular first-order reaction k_B = (8.3 ± 1.7) · 10² s^?1 which is observed as a further reduction of the active site. Spectral changes accompanying the reduction of oxidized spinach ferredoxin in the ultraviolet and visible range are discussed.     

Thermodynamics of the first transition in writhe of a small circular DNA by Monte Carlo simulation

Monte Carlo simulations are employed to investigate the thermodynamics of the first transition in writhe of a circular model filament corresponding to a 468 base-pair DNA. Parameters employed in these simulations are the torsional rigidity, C = 2.0 × 10⁻¹⁹ dyne cm², and persistence length, P = 500 Å. Intersubunit interactions are modeled by a screened Coulomb potential. For a straight line of subunits this accurately approximates the nonlinear Poisson-Boltzmann potential of a cylinder with the linear charge density of DNA. Curves of relative free energy vs writhe at fixed linking difference (Δ1) exhibit two minima, one corresponding to slightly writhed circles and one to slightly underwrithed figure-8's, whenever Δ1 lies in the transition region. The free energies of the two minima are equal when Δ1_c = 1.35, which defines the midpoint of the transition. At this midpoint, the free energy barrier between the two minima is found to be ΔG_bar = (0.20) k_BT at 298 K. Curves of mean potential energy vs writhe at fixed linking difference similarly exhibit two minima for Δ1 values in the transition region, and the two minimum mean potential energies are equal when Δ1 = 1.50. At the midpoint writhe, Δ1_c = 1.35, the difference in mean potential energy between the minimum free energy figure-8 and circle states is (1.3) k_BT, and the difference in their entropies is 1.3 k_B. Thus, the entropy of the minimum free energy figure-8 state significantly exceeds that of the circle at the midpoint of the transition. The first transition in writhe is found to occur over a rather broad range of Δ1 values from 0.85 to 1.85. The twist energy parameter (E_T), which governs the overall free energy of supercoiling, undergoes a sigmoidal decrease, while the translational diffusion coefficient undergoes a sigmoidal increase, over this same range. The static structure factor exhibits an increase, which reflects a decrease in radius of gyration associated with the circle to figure-8 transition. © 1996 John Wiley & Sons, Inc.     

Nonequilibrium as a source of unmixing

The intermediates, U and V, of a simple model reaction system (the so-called Brusselator) are shown to have both uniform and patterned steady states in a membrane. The patterned distribution of U and V has the symmetry of hexagons in the plane and is stable for B #62; B_m, B being the controlled concentration of one of the parametric species. The uniform solution is stable for B < B_c, and, since B_c #62; B_m, the increase and subsequent decrease of B over an interval that includes (B_m,B_c) can produce a hysteresis in which the transitions from mixed (i.e. uniform) to unmixed (i.e. hexagonlly patterned) states happen quite suddenly at the two critical values. Since the transfer or reactive properties of the membrane might be different in the two states, this model provides a bistable membrane element that might have prototypical value in a theory of biochemical control.     

<Emphasis Type="Italic">Hymenobacter sedentarius</Emphasis> sp. nov., isolated from a soil

A novel Gram-negative and red-pinkish bacterium designated DG5B^T was isolated from a dry soil. Cells were rods that were catalase- and oxidase-positive, and non-motile. The strain was found to grow at temperatures from 10 to 30°C (optimum 25°C) and pH 6.0–8.0, (optimum pH 7) on R2A broth. 16S rRNA gene sequence (1,452 bp) analysis of this strain identified it as a member of the genus Hymenobacter that belongs to the class Cytophagia. The highest gene sequence similarities were with Hymenobacter arizonensis OR362-8^T (98.3%), Hymenobacter humi DG31A^T (97.6%), and Hymenobacter glaciei VUG-A130^T (96.6%). Strain DG5B^T exhibited <70% DNA-DNA relatedness with H. arizonensis (34.7 ± 7.0%; reciprocally, 29.7 ± 1.2%) and H. humi (39.4 ± 4.3%; reciprocally, 39.5 ± 3.3%) as a different genomic species, and its genomic DNA G+C content was 59.8%. Strain DG5B^T had the following chemotaxonomic characteristics: the major fatty acids are iso-C_15:0, anteiso-C_15:0, C_16:1ω5c, and summed feature 3 (C_16:1ω7c / C_16:1ω6c); polar lipid profile contained phosphatidylethanolamine (PE), unknown aminophospholipid (APL), unknown glycolipids (GL), unknown phospholipids (PL), and unknown polar lipids (L); the major quinone is MK-7. The absorbance peak of pigment is at 481.0 nm. Strain DG5B^T showed low-level resistance to gamma-ray irradiation. Phenotypic, chemotaxonomic, and genotypic properties indicated that isolate DG5B^T represents a novel species within the genus Hymenobacter for which the name Hymenobacter sedentarius sp. nov. is proposed. The type strain is DG5B^T (=KCTC 32524^T =JCM 19636^T).     

One-electron reactions in biochemical systems as studied by pulse radiolysis. VI. Stages in the reduction of ferricytochrome c

When ferricytochrome c at pH about 9 is reduced by hydrated electrons and/or CO₂^?, it gives rise to an unstable form of ferrocytochrome c whose absorption spectrum, particularly in the Soret region, differs from that of normal ferrocytochrome c. This form changes intramolecularly (life-time about 0.1 s at ambient temperature) to yield normal ferrocytochrome c, and by 0.5 s the change in absorption spectrum in the range 225–600 nm produced by e^?_aq and/or CO₂^? is identical to the final change produced by reduction with an equivalent amount of sodium dithionite. This shows that both e^?_aq and CO^?₂ reduce cytochrome c with practically 100% efficiency. In the range 600–800 nm the spectrum of the unstable form is the same as that of normal ferrocytochrome c, both having small absorptions at 695 nm as compared with ferricytochrome c. As the unstable form disappears however a further loss of absorption at 695 nm occurs. This is taken to imply that the unstable form decays to a second unstable form which then rapidly donates an electron to the unchanged neutral form of ferricytochrome c, so reducing absorption in the 695 nm band. Subsequent to this process the absorption in the 695 nm band increases over a period of minutes owing to re-equilibration between the neutral and alkaline formes of ferricytochrome c. Between pH 7 and 10 the effect of pH on the absorption changes is consistent with the hypothesis of a second unstable form of ferrocytochrome c. Additional phenomena arise in more alkaline solutions. The rates of the various unimolecular processes are thought to be determined by the rates of change of conformation of the protein parts of the molecule following the change in oxidation state.