Species-specific differences in temporal and spatial variation in δ13C of plant carbon pools and dark-respired CO2 under changing environmental conditions

Stable carbon isotope signatures are often used as tracers for environmentally driven changes in photosynthetic δ¹³C discrimination. However, carbon isotope signatures downstream from carboxylation by Rubisco are altered within metabolic pathways, transport and respiratory processes, leading to differences in δ¹³C between carbon pools along the plant axis and in respired CO₂. Little is known about the within-plant variation in δ¹³C under different environmental conditions or between species. We analyzed spatial, diurnal, and environmental variations in δ¹³C of water soluble organic matter (δ¹³C_WSOM) of leaves, phloem and roots, as well as dark-respired δ¹³CO₂ (δ¹³C_res) in leaves and roots. We selected distinct light environments (forest understory and an open area), seasons (Mediterranean spring and summer drought) and three functionally distinct understory species (two native shrubs—Halimium halimifolium and Rosmarinus officinalis—and a woody invader—Acacia longifolia). Spatial patterns in δ¹³C_WSOM along the plant vertical axis and between respired δ¹³CO₂ and its putative substrate were clearly species specific and the most δ¹³C-enriched and depleted values were found in δ¹³C of leaf dark-respired CO₂ and phloem sugars, ~?15 and ~?33 ‰, respectively. Comparisons between study sites and seasons revealed that spatial and diurnal patterns were influenced by environmental conditions. Within a species, phloem δ¹³C_WSOM and δ¹³C_res varied by up to 4 ‰ between seasons and sites. Thus, careful characterization of the magnitude and environmental dependence of apparent post-carboxylation fractionation is needed when using δ¹³C signatures to trace changes in photosynthetic discrimination.     

Do grazer hair and faeces reflect the carbon isotope composition of semi-arid C3/C4 grassland?

The carbon isotope composition (δ¹³C) of C3/C4 mixed grassland is reflected in the δ¹³C of diet, hair or faeces of grazers, if ¹³C discrimination (¹³Δ) between grassland vegetation and these tissues is known and constant. However, these relationships could be modified by selective grazing or differential digestibility of the C3 and C4 components, potentially creating a bias between grassland and grazer tissue δ¹³C. Importantly, these factors have never been studied in detail. We investigated the relation between δ¹³C of C3/C4 grassland vegetation and that of faeces and hair of sheep in a 3-year (2005–2007) experiment in the Inner Mongolian semi-arid steppe. The experiment employed six stocking rates (0.375–2.25 sheep ha^?1 year^?1; four replications), which allowed for a large variation in species composition, digestibility, and diet selection. Faecal-nitrogen content, a proxy for digestibility, decreased from 1.9% to 1.5% during the grazing period due to aging of the herbage. At the same time, the C3/C4 ratio decreased due to the later growth initiation of C4 species. ¹³Δ between diet and faeces (¹³Δ_DF; 0.6‰) and between diet and hair (¹³Δ_DH; ?3.9‰) were not influenced by stocking rate, period in the season or C3/C4 ratio. Moreover, faeces–hair discrimination (¹³Δ_FH; ?4.3‰), which reflects differences between digestibility of the C3 and C4 components, did not vary along the different gradients. The δ¹³C of grassland vegetation can be estimated from the δ¹³C of sheep faeces and hair, provided that ¹³Δ was accounted for. This is useful for landscape- or regional-scale investigations or reconstruction of C3/C4 vegetation distribution from faeces and hair, which provide different temporal and spatial integration of grassland isotope signals.     

Can plants mediate the humoral immunity and biochemical metabolism of entomopathogen‐infected caterpillars?

Plant‐insect herbivore‐entomopathogen interactions are one of the hot topics in biological control and humoral immunity, and biochemical metabolism are important responses of herbivores to pathogen infection. Entomopathogens are key biocontrol agents of caterpillars, but how plants affect the responses of caterpillars to these organisms is not well understood. We studied hormonal immunity (lysozyme and phenoloxidase activities) and biochemical metabolism (total protein and lipid contents) of Beauveria bassiana‐infected beet armyworm (Spodoptera exigua) larvae that feed on five different host plants (soya bean, Chinese cabbage, edible amaranth, water convolvulus and pepper). Results indicated that plant species differentially affected lysozyme and phenoloxidase activity and lipid content, but had no effect on protein content of pathogen‐infected caterpillars. Both lysozyme and phenoloxidase activities were generally higher in entomopathogen‐infected larvae that feed on edible amaranth or water convolvulus compared with the other three plants from days 1 to 5 after treatment. Plant species did not affect in regular changes during the 5 days in the lipid content of infected or non‐infected caterpillars. Our study reveals that plants fail to affect the biochemical metabolism but plants can mediate the humoral immunity of caterpillars to defend against pathogens. This study provides insight into plant‐mediated effects on the response of herbivores to pathogens.     

How closely do the delta(13)C values of Crassulacean Acid metabolism plants reflect the proportion of CO(2) fixed during day and night?

The extent to which Crassulacean acid metabolism (CAM) plant delta(13)C values provide an index of the proportions of CO(2) fixed during daytime and nighttime was assessed. Shoots of seven CAM species (Aloe vera, Hylocereus monocanthus, Kalanchoe beharensis, Kalanchoe daigremontiana, Kalanchoe pinnata, Vanilla pauciflora, and Xerosicyos danguyi) and two C(3) species (teak [Tectona grandis] and Clusia sp.) were grown in a cuvette, and net CO(2) exchange was monitored for up to 51 d. In species exhibiting net dark CO(2) fixation, between 14% and 73.3% of the carbon gain occurred in the dark. delta(13)C values of tissues formed inside the cuvette ranged between -28.7 per thousand and -11.6 per thousand, and correlated linearly with the percentages of carbon gained in the light and in the dark. The delta(13)C values for new biomass obtained solely during the dark and light were estimated as -8.7 per thousand and -26.9 per thousand, respectively. For each 10% contribution of dark CO(2) fixation integrated over the entire experiment, the delta(13)C content of the tissue was, thus, approximately 1.8 per thousand less negative. Extrapolation of the observations to plants previously surveyed under natural conditions suggests that the most commonly expressed version of CAM in the field, "the typical CAM plant," involves plants that gain about 71% to 77% of their carbon by dark fixation, and that the isotopic signals of plants that obtain one-third or less of their carbon in the dark may be confused with C(3) plants when identified on the basis of carbon isotope content alone.     

Does the growth response of woody plants to elevated CO2 increase with temperature? A model‐oriented meta‐analysis

The temperature dependence of the reaction kinetics of the Rubisco enzyme implies that, at the level of a chloroplast, the response of photosynthesis to rising atmospheric CO₂ concentration (C_a) will increase with increasing air temperature. Vegetation models incorporating this interaction predict that the response of net primary productivity (NPP) to elevated CO₂ (eC_a) will increase with rising temperature and will be substantially larger in warm tropical forests than in cold boreal forests. We tested these model predictions against evidence from eC_a experiments by carrying out two meta‐analyses. Firstly, we tested for an interaction effect on growth responses in factorial eC_a × temperature experiments. This analysis showed a positive, but nonsignificant interaction effect (95% CI for above‐ground biomass response = ?0.8, 18.0%) between eC_a and temperature. Secondly, we tested field‐based eC_a experiments on woody plants across the globe for a relationship between the eC_a effect on plant biomass and mean annual temperature (MAT). This second analysis showed a positive but nonsignificant correlation between the eC_a response and MAT. The magnitude of the interactions between CO₂ and temperature found in both meta‐analyses were consistent with model predictions, even though both analyses gave nonsignificant results. Thus, we conclude that it is not possible to distinguish between the competing hypotheses of no interaction vs. an interaction based on Rubisco kinetics from the available experimental database. Experiments in a wider range of temperature zones are required. Until such experimental data are available, model predictions should aim to incorporate uncertainty about this interaction.     

The role of bioenergy for global deep decarbonization: CO2 removal or low‐carbon energy?

Bioenergy is expected to have a prominent role in limiting global greenhouse emissions to meet the climate change target of the Paris Agreement. Many studies identify negative emissions from bioenergy generation with carbon capture and storage (BECCS) as its key contribution, but assume that no other CO₂ removal technologies are available. We use a global integrated assessment model, TIAM‐UCL, to investigate the role of bioenergy within the global energy system when direct air capture and afforestation are available as cost‐competitive alternatives to BECCS. We find that the presence of other CO₂ removal technologies does not reduce the pressure on biomass resources but changes the use of bioenergy for climate mitigation. While we confirm that when available BECCS offers cheaper decarbonization pathways, we also find that its use delays the phase‐out of unabated fossil fuels in industry and transport. Furthermore, it displaces renewable electricity generation, potentially increasing the likelihood of missing the Paris Agreement target. We found that the most cost‐effective solution is to invest in a basket of CO₂ removal technologies. However, if these technologies rely on CCS, then urgent action is required to ramp up the necessary infrastructure. We conclude that a sustainable biomass supply is critical for decarbonizing the global energy system. Since only a few world regions carry the burden of producing the biomass resource and store CO₂ in geological storage, adequate international collaboration, policies and standards will be needed to realize this resource while avoiding undesired land‐use change.     

Does elevated atmospheric [CO2] alter diurnal C uptake and the balance of C and N metabolites in growing and fully expanded soybean leaves?

Increases in growth at elevated [CO2] may be constrained by a plant's ability to assimilate the nutrients needed for new tissue in sufficient quantity to match the increase in carbon fixation and/or the ability to transport those nutrients and carbon in sufficient quantity to growing organs and tissues. Analysis of metabolites provides an indication of shifts in carbon and nitrogen partitioning due to rising atmospheric [CO2] and can help identify where bottlenecks in carbon utilization occur. In this study, the carbon and nitrogen balance was investigated in growing and fully expanded soybean leaves exposed to elevated [CO2] in a free air CO2 enrichment experiment. Diurnal photosynthesis and diurnal profiles of carbon and nitrogen metabolites were measured during two different crop growth stages. Diurnal carbon gain was increased by c. 20% in elevated [CO2] in fully expanded leaves, which led to significant increases in leaf hexose, sucrose, and starch contents. However, there was no detectable difference in nitrogen-rich amino acids and ureides in mature leaves. By contrast to mature leaves, developing leaves had high concentrations of ureides and amino acids relative to low concentrations of carbohydrates. Developing leaves at elevated [CO2] had smaller pools of ureides compared with developing leaves at ambient [CO2], which suggests N assimilation in young leaves was improved by elevated [CO2]. This work shows that elevated [CO2] alters the balance of carbon and nitrogen pools in both mature and growing soybean leaves, which could have down-stream impacts on growth and productivity.     

Coral skeletal carbon isotopes (δ<Superscript>13</Superscript>C and Δ<Superscript>14</Superscript>C) record the delivery of terrestrial carbon to the coastal waters of Puerto Rico

Tropical small mountainous rivers deliver a poorly quantified, but potentially significant, amount of carbon to the world’s oceans. However, few historical records of land–ocean carbon transfer exist for any region on Earth. Corals have the potential to provide such records, because they draw on dissolved inorganic carbon (DIC) for calcification. In temperate systems, the stable- (δ¹³C) and radiocarbon (Δ¹⁴C) isotopes of coastal DIC are influenced by the δ¹³C and Δ¹⁴C of the DIC transported from adjacent rivers. A similar pattern should exist in tropical coastal DIC and hence coral skeletons. Here, δ¹³C and Δ¹⁴C measurements were made in a 56-year-old Montastraea faveolata coral growing ~1 km from the mouth of the Rio Fajardo in eastern Puerto Rico. Additionally, the δ¹³C and Δ¹⁴C values of the DIC of the Rio Fajardo and its adjacent coastal waters were measured during two wet and dry seasons. Three major findings were observed: (1) synchronous depletions of both δ¹³C and Δ¹⁴C in the coral skeleton are annually coherent with the timing of peak river discharge, (2) riverine DIC was always more depleted in δ¹³C and Δ¹⁴C than seawater DIC, and (3) the correlation of δ¹³C and Δ¹⁴C was the same in both coral skeleton and the DIC of the river and coastal waters. These results indicate that coral skeletal δ¹³C and Δ¹⁴C are recording the delivery of riverine DIC to the coastal ocean. Thus, coral records could be used to develop proxies of historical land–ocean carbon flux for many tropical regions. Such information could be invaluable for understanding the role of tropical land–ocean carbon flux in the context of land-use change and global climate change.     

Does the 'mystery of the extra glucose' during CNS activation reflect glutamate synthesis?

The hypothesis is proposed that the repeatedly demonstrated rise in local cerebral blood flow and glucose utilisation during neuronal activation, without a corresponding increase in oxygen utilisation, may reflect glutamine formation from glucose, followed by complete oxidative degradation of glutamate along complex and extended, but well described pathways, known to operate in the brain. The former process requires large amounts of glucose but little oxygen. The latter utilises oxygen but no additional glucose, is a prolonged process and so at any one time involves only a small increase in the rate of oxygen utilisation which is difficult to demonstrate experimentally.     

δ13C values of an herbivore and the ratio of C3 to C4 plant carbon in its diet

Summary The ¹³C values of whole body samples of the beetle Tribolium castaneum are closely correlated with the ¹³C values of the plant carbon in its diet. The correlation is always high for diets ranging from 100% C₄ to 100% C₃ plant material. The degree of correlation is independent of the growth rate of the animals.     

Does intrinsic fluorescence reflect conformational changes in the Ca2+-ATPase of sarcoplasmic reticulum?

We have investigated the kinetics of the intrinsic fluorescence drop observed when ATP is added to purified sarcoplasmic reticulum ATPase in a potassium-free medium containing magnesium and calcium, at pH 6 and 20°C. Under these conditions, analysis of the fluorescence drop is complex. Several events contributed to the rate of the fluorescence drop initiated by turnover, including phosphorylation, conformational transition of the phosphorylated complex, and dephosphorylation. On the other hand, when 75% of total fluorescence was quenched by energy transfer to the membrane-bound ionophore A23187, the observed turnoverdependent drop in residual fluorescence mainly reflected the conformational transition of the phosphorylated ATPase. Combination of fast kinetics with the quenching of selected tryptophan residues is suggested to be a promising tool for the study of proteins containing many of these residues.     

Does detritus quality predict the effect of native and non‐native plants on the performance of larval amphibians?

1. The lack of consistent differences between the traits of native and non‐native plant species makes it difficult to make general predictions about the ecological impact of invasive plants; however, the increasing number of non‐native plants in many habitats makes the assessment of the impact of each individual species impracticable. General knowledge about how specific plant traits are linked to their effects on communities or ecosystems may be more useful for predicting the effect of plant invasions. Specifically, we hypothesised that higher carbon‐to‐nitrogen ratio (C:N) and percent lignin in plant detritus would reduce the rate of development and total mass at metamorphosis of tadpoles, resulting in lower metamorph production (total fresh biomass) and amphibian species richness. 2. To test these hypotheses, we raised five species of tadpoles in mesocosms containing senescent leaves of three common native and three common non‐native wetland plants that varied in C:N ratio and % lignin. 3. Leaf mass loss, total metamorph production and the number of species that metamorphosed declined as a function of increasing C:N ratio of plant leaves. Plant lignin content was not related to the production of metamorphs or the number of species that metamorphosed. The percentage of wood frog (Lithobates sylvaticus) and American toad (Anaxyrus americanus) tadpoles reaching metamorphosis declined as a function of increasing plant C:N ratio. Mean time to metamorphosis increased and mean mass at metamorphosis declined as a function of increasing plant C:N ratio. Tadpole performance and metamorph diversity and production (biomass) were similar between native and non‐native plant species with similar C:N ratio in leaves. Percent lignin was not a significant predictor of tadpole performance. 4. Our results show that the impact of a plant invasion on tadpole performance could depend on differences between the quality of the detritus produced by the invading species and that of the native species it replaces. We suggest that plant community changes that lead to dominance by more recalcitrant plant species (those with higher leaf C:N ratio) may negatively affect amphibian populations.     

Does the Diagnostic Accuracy of the 13C‐Urea Breath Test Vary with Age Even After the Application of Urea Hydrolysis Rate?

Background: Endogenous CO₂ production may be a possible explanation for higher false‐positive results reported for ¹³C‐urea breath test (UBT) in children below 6 years. In this study, we evaluated whether age affects the diagnostic accuracy of the ¹³C‐UBT even after the application of urea hydrolysis rate (UHR) in children. Methods: A total of 612 ¹³C‐UBTs and endoscopic biopsies were performed on children divided into two groups; children under 6 years (n = 126) and children aged 6–18 years (n = 486). For ¹³C‐UBT, 75 mg ¹³C‐urea was ingested, and breath sample was collected 30 minutes later. Delta over baseline (DOB) was determined, and UHR was calculated to normalize the DOB values for endogenous CO₂ production. Results: There was significant difference between the DOB values of children under 6 years and those of children over 6 years in H. pylori‐positive (p = .029) and ‐negative groups (p = .002). On applying the UHR, no significant difference was observed between the UHR values of children under 6 years and those of children over 6 years in H. pylori‐positive (p = .877) and ‐negative groups (p = .427). In 12.6% children under 6 years, false‐positive results were observed on applying the DOB, and in 9.0% on applying the UHR (p = .125). Conclusions: The ¹³C‐UBT is a noninvasive method exhibiting high diagnostic accuracy with both UHR as well as DOB. However, high false‐positive results for ¹³C‐UBT were noted in children below 6 years on applying both UHR as well as DOB. Thus, this may not only be due to the effects of endogenous CO₂ production but also due to other factors.     

Does the flatfish community of the Mondego estuary (Portugal) reflect environmental changes?

Temporal and spatial patterns of abundance of the flatfish community in the Mondego estuary were investigated from 2003 to 2007, based on monthly beam trawl samples. During the study period there was a severe drought, with consequential reductions in river runoff. A total of eight flatfish species occurred within the estuary, with seasonal specific richness and abundance varying considerably. It was possible to identify three main groups: one composed of species present throughout the study period and in high densities: Platichthys flesus and Solea solea (maximum densities 3.7 and 4.1 Ind 1000 m^?2, respectively); a second group of less abundant but regularly present species: Scophthalmus rhombus and Solea senegalensis (maximum densities 0.2 and 0.3 Ind 1000 m^?2, respectively); and a third group of occasional species that occurred only during the drought period: Arnoglossus laterna, Buglossidium luteum, Dicologlossa hexophthalma and Pegusa lascaris. Flatfish distribution patterns varied according to the estuarine use guild: marine‐estuarine dependent fish occurred mainly in the upper reaches, while marine stragglers and marine‐estuarine opportunists occurred mostly in the downstream areas. Species with more northern latitudinal affinities were the most affected by the drought, related with a lesser extent of river plumes to the coastal area, resulting in a reduction in half of the abundance levels. However, flatfish species with more southern affinities increased in abundance during the drought, benefiting also from an increase in estuarine water temperature. Early summer salinity and precipitation values were good proxies for estimating abundance levels of P. flesus and S. solea, respectively, emphasizing the importance of hydrodynamics for the recruitment and abundance of these commercially important species.     

Genomic‐scale comparison of sequence‐ and structure‐based methods of function prediction: Does structure provide additional insight?

A function annotation method using the sequence-to-structure-to-function paradigm is applied to the identification of all disulfide oxidoreductases in the Saccharomyces cerevisiae genome. The method identifies 27 sequences as potential disulfide oxidoreductases. All previously known thioredoxins, glutaredoxins, and disulfide isomerases are correctly identified. Three of the 27 predictions are probable false-positives. Three novel predictions, which subsequently have been experimentally validated, are presented. Two additional novel predictions suggest a disulfide oxidoreductase regulatory mechanism for two subunits (OST3 and OST6) of the yeast oligosaccharyltransferase complex. Based on homology, this prediction can be extended to a potential tumor suppressor gene, N33, in humans, whose biochemical function was not previously known. Attempts to obtain a folded, active N33 construct to test the prediction were unsuccessful. The results show that structure prediction coupled with biochemically relevant structural motifs is a powerful method for the function annotation of genome sequences and can provide more detailed, robust predictions than function prediction methods that rely on sequence comparison alone.     

Does the relationship between offspring size and performance change across the life‐history?

What selection pressures drive the evolution of offspring size? Answering this fundamental question for any species requires an understanding of the relationship between offspring size and offspring fitness. A major goal of evolutionary ecologists has been to estimate this critical relationship, but for organisms with complex lifecycles, logistical constraints restrict most studies to early life‐history stages only. Here, we examine the relationship between offspring size and offspring performance in the field across multiple life‐history stages and across generations in a marine invertebrate .We then use these data to parameterise a simple optimality model to generate predictions of optimal offspring size and determined whether these predictions depended on which estimate of offspring performance was used. We found that offspring size had consistently positive effects on performance (estimated as post‐metamorphic growth, fecundity and reproductive output). We also found that manipulating the experience of offspring during the larval phase changed the way in which offspring size affects performance: offspring size affected post‐metamorphic growth when larvae were allowed to settle immediately but offspring size affected survival when larvae were forced to swim prior to settlement. Despite finding consistently positive effects of offspring size, early measures of the effect of offspring size resulted in the systematic underestimation of optimal offspring size. Surprisingly, the amount of variation in offspring performance that offspring size explained decreased with increasing time in the field but the steepness of the relationship between offspring size and performance actually increased. Our results suggest caution should be exercised when empirically examining offspring size effects – it may not be appropriate to assume that early measures are a good reflection of the actual relationship between offspring size and fitness.     

Study of protein dynamics in solution by measurement of 13Cα-13CO NOE and 13CO longitudinal relaxation

Summary ¹³C-¹³CO homonuclear NOE and ¹³CO T₁ relaxation were measured for a 20 kDa protein using tripleresonance pulse sequences. The experiments were sufficiently sensitive to obtain statistically significant differences in relaxation parameters over the molecule. The ¹³C-¹³CO cross-relaxation rate, obtained from these data, is directly proportional to an order parameter describing local motion and it is largely independent of the local correlation time. It is therefore a relatively straightforward observable for the identification of local dynamics.     

Effects of atmospheric CO2 enrichment on δ 13C, δ 15N values and turnover times of soil organic matter pools isolated by thermal techniques

CO₂ applied for Free-Air CO₂ Enrichment (FACE) experiments is strongly depleted in ¹³C and thus provides an opportunity to study C turnover in soil organic matter (SOM) based on its δ ¹³C value. Simultaneous use of ¹⁵N labeled fertilizers allows N turnover to be studied. Various SOM fractionation approaches (fractionation by density, particle size, chemical extractability etc.) have been applied to estimate C and N turnover rates in SOM pools. The thermal stability of SOM coupled with C and N isotopic analyses has never been studied in experiments with FACE. We tested the hypothesis that the mean residence time (MRT) of SOM pools is inversely proportional to its thermal stability. Soil samples from FACE plots under ambient (380 ppm) and elevated CO₂ (540 ppm; for 3 years) treatments were analyzed by thermogravimetry coupled with differential scanning calorimetry (TG-DSC). Based on differential weight losses (TG) and energy release or consumption (DSC), five SOM pools were distinguished. Soil samples were heated up to the respective temperature and the remaining soil was analyzed for δ ¹³C and δ ¹⁵N by IRMS. Energy consumption and mass losses in the temperature range 20–200°C were mainly connected with water volatilization. The maximum weight losses occurred from 200–310°C. This pool contained the largest amount of carbon: 61% of the total soil organic carbon in soil under ambient treatment and 63% in soil under elevated CO₂, respectively. δ ¹³C values of SOM pools under elevated CO₂ treatment showed an increase from −34.3‰ of the pool decomposed between 20–200°C to −18.1‰ above 480°C. The incorporation of new C and N into SOM pools was not inversely proportional to its thermal stability. SOM pools that decomposed between 20–200 and 200–310°C contained 2 and 3% of the new C, with a MRT of 149 and 92 years, respectively. The pool decomposed between 310–400°C contained the largest proportion of new C (22%), with a MRT of 12 years. The amount of fertilizer-derived N after 2 years of application in ambient and elevated CO₂ treatments was not significantly different in SOM pools decomposed up to 480°C having MRT of about 60 years. In contrast, the pool decomposed above 480°C contained only 0.5% of new N, with a MRT of more than 400 years in soils under both treatments. Thus, the separation of SOM based on its thermal stability was not sufficient to reveal pools with contrasting turnover rates of C and N. Responsible Editor: Bernard Nicolardot.     

Does the Type of Disturbance Matter When Restoring Disturbance‐Dependent Grasslands?

The reintroduction of burning is usually viewed as critical for grassland restoration; but its ecological necessity is often untested. On the one hand, fire may be irreplaceable because it suppresses dominant competitors, eliminates litter, and modifies resource availability. On the other hand, its impacts could be mimicked by other disturbances such as mowing or weeding that suppress dominants but without the risks sometimes associated with burning. Using a 5‐year field experiment in a degraded oak savanna, we tested the impacts of fire, cutting and raking, and weeding on two factors critical for restoration: controlling dominant invasive grasses and increasing subordinate native flora. We manipulated the season of treatment application and used sites with different soil depths because both factors influence fire behavior. We found no significant difference among the treatments—all were similarly effective at suppressing exotics and increasing native plant growth. This occurred because light is the primary limiting resource for many native species and each treatment increased its availability. The effectiveness of disturbance for restoration depended more on the timing of application and site factors than on the type of treatment used. Summer disturbances occurred near their reproductive peak of the exotics, so their mortality approached 100%. Positive responses by native species were significantly greater on shallow soils because these areas had higher native diversity prior to treatment. Although likely not applicable to all disturbance‐dependent ecosystems, these results emphasize the importance of testing the effectiveness of alternative restoration treatments prior to their application.