甘蓝型油菜ZF-HD基因家族的鉴定与系统进化分析

ZF-HD是一类植物特有的转录因子, 在植物生长发育及胁迫响应过程中发挥重要作用。利用生物信息学方法, 在甘蓝型油菜(Brassica napus)基因组中鉴定到62个ZF-HD基因, 其中83.9%的基因缺乏内含子, 93.5%的BnZF-HD等电点大于7, 预测定位于细胞核的蛋白大多由100个以上氨基酸组成。根据进化关系可将其分为6个亚群, 在每个亚群中, 甘蓝(B. oleracea)和白菜(B. rapa)的ZF-HD基因数量相等或近似相等, 而甘蓝型油菜的ZF-HD基因数量接近或等同于甘蓝和白菜的ZF-HD基因数量之和。同一亚群的motif数量和类型高度相似。共线性分析结果显示, 全基因组三倍体化使ZF-HD基因在二倍体祖先得到扩张, 而异源多倍体化又进一步使甘蓝型油菜ZF-HD基因家族扩张。K_a/K_s值说明大多数ZF-HD基因在进化过程中受到了纯化选择。所有BnZF-HD基因都具有光响应元件, 2/3的基因具有MeJA、ABA和厌氧诱导顺式作用元件, 推测这些基因可能参与相关生物学过程。研究结果为进一步挖掘该家族基因的生物学功能奠定基础, 同时为揭示多基因家族在异源多倍体中的进化式样提供借鉴。     

甘蓝型油菜ZF-HD基因家族的鉴定与系统进化分析

ZF-HD是一类植物特有的转录因子, 在植物生长发育及胁迫响应过程中发挥重要作用。利用生物信息学方法, 在甘蓝型油菜(Brassica napus)基因组中鉴定到62个ZF-HD基因, 其中83.9%的基因缺乏内含子, 93.5%的BnZF-HD等电点大于7, 预测定位于细胞核的蛋白大多由100个以上氨基酸组成。根据进化关系可将其分为6个亚群, 在每个亚群中, 甘蓝(B. oleracea)和白菜(B. rapa)的ZF-HD基因数量相等或近似相等, 而甘蓝型油菜的ZF-HD基因数量接近或等同于甘蓝和白菜的ZF-HD基因数量之和。同一亚群的motif数量和类型高度相似。共线性分析结果显示, 全基因组三倍体化使ZF-HD基因在二倍体祖先得到扩张, 而异源多倍体化又进一步使甘蓝型油菜ZF-HD基因家族扩张。K_a/K_s值说明大多数ZF-HD基因在进化过程中受到了纯化选择。所有BnZF-HD基因都具有光响应元件, 2/3的基因具有MeJA、ABA和厌氧诱导顺式作用元件, 推测这些基因可能参与相关生物学过程。研究结果为进一步挖掘该家族基因的生物学功能奠定基础, 同时为揭示多基因家族在异源多倍体中的进化式样提供借鉴。     

转基因抗除草剂油菜对近缘作物的基因漂移

以转基因抗除草剂油菜 Q3和 HCN- 19为花粉供体材料 ,油菜近缘作物为花粉受体材料 ,在自然授粉条件下研究甘蓝型油菜与芸薹属近缘作物间的基因漂移频率。结果表明 ,油菜对芸薹属 6个种甘蓝、黑芥、埃芥、芥菜型油菜、白菜型油菜和甘蓝型油菜的基因漂移率分别为 0、0 .0 2 4 %～ 0 .2 4 3%、 0 .0 2 8%～ 0 .0 92 %、 0 .10 9%～ 0 .95 1%、 0 .4 79%～ 0 .879%、 1.2 5 2 %～2 .191%。且基因漂移频率受多种因素影响 ,其中与杂交亲和性、花期同步率、种植面积等高度相关。通过花粉将抗除草剂基因漂移给近缘作物 ,油菜是需要特别关注的作物     

甘蓝型油菜MADS-box基因家族的鉴定与系统进化分析

MADS-box基因家族参与调控开花时间、花器官分化、根系生长、分生组织分化、子房和配子发育、果实膨大及衰老等植物生长发育的重要过程。基于甘蓝型油菜(Brassica napus)基因组测序数据,利用生物信息学方法对甘蓝型油菜MADS-box基因家族进行鉴定和注释及基因结构与系统进化分析。结果显示,在甘蓝型油菜中鉴定出307个MADS-box基因家族成员,根据进化关系可将其分为两大类型,I型(M-type)包含α、β、γ三个亚家族,II型(MIKC-type)包括MIKCC和MIKC*两个亚家族,MIKCC可进一步分为13个小类;甘蓝型油菜A基因组染色体上分布的MADS-box基因多于C基因组。在基因结构上,MIKC-type亚家族基因序列普遍比M-type长且含有较多的外显子;M-type亚家族蛋白序列中的motif数量为2–5个,MIKC-type亚家族蛋白序列中平均含有7个motif。拟南芥(Arabidopsis thaliana)与甘蓝型油菜MADS-box基因共线性分析结果显示,全基因组复制事件对MADS-box基因家族尤其是MIKC亚家族的扩张起重要作用;MIKC亚家族基因在进化过程中受到的选择压力约为M-type的2倍,这表明MIKC-type亚家族在进化过程中被选择性保留。     

十字花科植物PEBP基因家族的分子进化

近年来植物基因组测序物种数量的指数增长, 为我们对植物环境适应性状的遗传和变异的全面理解提供了保障。磷脂酰乙醇胺结合蛋白(phosphatidylethanolamine-binding protein, PEBP)在植物的开花转变和株型建立中起着重要作用, 一直是植物生物学研究关注的热点领域之一。然而对该家族并没有利用新近测序的基因组数据进行比较基因组分析, 制约了对其在分子水平上的进化研究。为了确定PEBP基因家族的分子进化机制, 本研究利用生物信息学方法开展了7种十字花科植物拟南芥(Arabidopsis thaliana)、琴叶拟南芥(A. lyrata)、小鼠耳芥(A. pumila)、亚麻荠(Camelina sativa)、甘蓝(Brassica oleracea)、白菜(B. rapa)和油菜(B. napus)的PEBP基因家族成员的全基因组鉴定、结构特征和比较进化分析。从7个物种中共鉴定出91个PEBP基因, 系统进化分析表明它们分属5个亚家族: MFT、FT/TSF、TFL1、CEN和BFT。基因结构分析发现甘蓝、白菜和油菜的CEN基因内含子明显比其余4个物种的内含子长。蛋白结构域分析表明MFT比其他4个亚家族成员少了一个motif 2, TFL1比其他亚家族多了motif 8。选择压力分析发现7个物种PEBP同源基因均受到较强的纯化选择, 其中TFL1亚家族受到的纯化选择最弱。共线性分析表明十字花科植物PEBP基因家族随古代多倍体事件发生不同程度的扩张, TSF在甘蓝、白菜和油菜中丢失。非生物胁迫下, 在拟南芥中过量表达小鼠耳芥的一个MFT基因, 转基因拟南芥种子的萌发率明显低于野生型, 暗示MFT基因在调控种子萌发上的功能保守。本研究为深入研究十字花科植物PEBP基因的进化特征和生物学功能奠定了基础。     

人工合成甘蓝型油菜研究进展

利用二倍体亲本甘蓝(Brassica oleracea,2n=18,CC)和白菜型油菜(Brassica rapa,2n=20,AA)或白菜(Brassica campestris,2n=20,AA)可人工获得甘蓝型油菜。新型甘蓝型油菜不仅拓宽了甘蓝型油菜种质资源,开辟了甘蓝型油菜育种新途径,而且在芸薹属异源多倍化过程研究中具有广泛的应用。本文重点对人工合成甘蓝型油菜获得方法及后代二倍化过程中染色体、基因组、基因表达和表观遗传学方面所发生的变异及其遗传规律的最新研究进展做概述,并对近年来人工合成甘蓝型油菜在育种中的一些应用进行综述,旨在为进一步开展人工合成甘蓝型油菜的研究提供理论依据和新的方向。     

甘蓝型油菜MAP70基因家族全基因组鉴定与表达分析

采用生物信息学方法,从甘蓝型油菜（Brassica napus L.）基因组数据库中筛选鉴定MAP70s基因家族成员,对鉴定得到的BnaMAP70s基因家族成员的序列特征进行生物信息学分析,同时利用qRT-PCR方法分析该基因家族成员在不耐渍和强耐渍甘蓝型油菜品种幼苗中的基因表达水平。结果显示,本研究共鉴定得到19个BnaMAP70基因家族成员,分布在11条染色体上,可分为5个亚家族。BnaMAP70s启动子的上游存在厌氧胁迫、响应植物激素等相关元件,表明BnaMAP70s可能参与植株生长发育和渍水胁迫调控;转录水平存在品种特异性、植株部位特异性、时间特异性。q RT-PCR分析结果表明,BnaMAP70-1和BnaMAP70-4在渍水胁迫下出现表达差异,说明这两个基因受渍水胁迫的调控。     

油菜糖基转移酶BnIRX14基因家族鉴定及遗传转化

糖基转移酶在植物抗逆和发育调控中发挥着重要作用，为发掘糖基转移酶BnIRX14基因家族成员，解析在甘蓝型油菜中的生物学功能，该研究利用前期在甘蓝型油菜中克隆到的BnIRX14基因，采用序列比对和遗传转化的方法，进行BnIRX14基因家族成员鉴定和功能验证，以探讨BnIRX14基因家族在油菜发育中调控机理，为油菜杂交育种和抗逆育种提供理论依据。结果表明：(1)经基因组数据库比对分析在甘蓝型油菜中成功鉴定到3个糖基转移酶不同亚家族的11个BnIRX14家族成员，它们均具有糖基转移酶GT43家族成员结构域特征，其中有8个基因分别被定位在6条不同染色体上，3个亚家族在基因结构和保守元件中具有较大特异性。(2)利用农杆菌介导转化法，获得BnIRX14基因RNA干扰转基因油菜株系20株，经PCR检测，确定5株阳性转化体。(3)表型鉴定发现，有2株阳性转化株的花柱头至花柱中央为一孔状空腔，子房较野生型明显膨大，且柱头表面授粉后不能结实，表现雌性不育；其他3个阳性株花器结构发育正常，但植株茎、枝表皮有液体渗出，呈露珠状粘附在茎、枝表面。(4)实时荧光定量PCR分析显示，转BnIRX14基因油菜阳性植株...     

甘蓝型油菜RPD3/HDA1基因家族鉴定及早熟相关基因挖掘

该研究运用生物信息学方法鉴定甘蓝型油菜RPD3/HDA1基因家族,检测了其在‘黔油早2号’和‘中双11’中的表达水平及2个品种在低温(4℃)和ABA胁迫下该家族基因的表达特征,以探讨RPD3/HDA1基因在甘蓝型油菜中的潜在功能,为早熟油菜抗逆性遗传改良提供理论基础和候选基因。结果表明:(1)在甘蓝型油菜全基因组中共鉴定到28个RPD3/HDA1基因,将其命名为BnHDA1~BnHDA28,聚类为4个亚家族,同一亚家族成员的基因结构较为相似;在该基因家族中共检测到16对复制基因,均为片段重复。(2)顺式作用元件预测统计中共发现675个元件与植物激素、环境胁迫和光响应有关。(3)qRT-PCR分析显示,RPD3/HDA1基因在‘黔油早2号’中的表达量均高于‘中双11’;低温胁迫下,‘黔油早2号’和‘中双11’中RPD3/HDA1基因呈差异表达,与‘中双11’相比,RPD3/HDA1基因在‘黔油早2号’中的下调幅度较大;ABA处理后,RPD3/HDA1基因在2个品种中表达模式不一致,‘黔油早2号’中大部分RPD3/HDA1基因表达量较‘中双11’下调幅度小。研究认为,RPD3/HDA1基因可能在油菜开花中发挥调节作用,而且可能通过激素信号通路和防御信号通路参与油菜的生长发育和防御反应的调节。     

蒺藜苜蓿LBD转录因子基因家族全基因组分析

LBD是植物中所特有的转录因子基因家族,在调控植物侧生组织发育、营养代谢以及响应逆境胁迫等方面具有重要作用。该研究利用生物信息学手段,从全基因组水平筛选和鉴定了蒺藜苜蓿LBD基因家族,并对基因结构、系统进化、进化压力、保守域、染色体定位以及基因表达模式等进行了分析。研究结果共鉴定出2类5亚类共计56个蒺藜苜蓿LBD家族基因,在8条染色体上均有分布,但分布不均匀。该家族成员外显子数目都不超过2个,结构简单,基因间在进化时存在负向选择作用。基因表达模式分析发现,该家族成员的表达具有一定的时空特异性,并受干旱和氮素调控。该研究结果对蒺藜苜蓿LBD基因功能研究及进化分析具有重要的意义。     

Cellular responses of two rapid-cycling Brassica species, B. napus and B. carinata, to seawater salinity

Cellular responses of two rapid-cycling Brassica species. B. napus and B. carinata , to seawater salinity were characterized to determine whether callus showed a tolerance similar to that of whole plants. Callus was initiated from the leaves of 7-day-old seedlings of B. napus and B . carinata and then subcultured with two different levels of seawater salinity (2.3 and 5.2 g l⁻¹ Instant Ocean. Aquarium Systems, Inc. Mentor. OH, USA) for 14 days. Callus growth of both species was reduced by seawater salinity. Based on the percentage of the reduction in the relative fresh weight gain. B. napus was more salt-tolerant than B. carinata . consistent with the response of whole plants of the same species to seawater salinity. Seawater salinity caused changes in the concentrations of Na, K. Ca, Mg and Cl in both B. napus and B. carinata . The growth expressed as the percentage of control was significantly (P = 0.05) positively correlated with the concentration of Ca. and K/Na and Ca/Na ratios. It was also negatively correlated ( P = 0.01) with the concentrations of Na. Cl and Mg. In comparison with B. carinala . the salt-tolerant species, B . napus , showed a small reduction in the concentrations of Ca and K in the salt-stressed plants relative to the control.     

The relative attractiveness of Brassica napus,B. rapa,B. juncea and Sinapis alba to pollen beetles

It is often suggested that weeds from the same family as the crop plant may increase insect pest damages by providing shelter and additional oviposition opportunities. We compared the relative attractiveness of Brassica rapa L., B. juncea L., Sinapis alba L. and B. napus L. (Capparales: Brassicaceae) to the pollen beetle and its hymenopteran parasitoids in field conditions. Our results revealed that none of the investigated plants increased the pest abundance on B. napus plants. On the contrary, B. juncea and S. alba lured beetles away from B. napus during its damage-susceptible stage. The parasitism rate of pollen beetle larvae was the highest on B. juncea plants, indicating that cruciferous weeds could improve the natural control of the pollen beetle by providing additional hosts for parasitoids. Therefore, close relatives of oilseed rape might be used to trap pollen beetle adults, but also to support populations of natural enemies that could decrease the number of beetles.     

Alleviation of osmotic stress in Brassica napus,B. campestris,and B. juncea by ascorbic acid application

The roles of ascorbic acid (AsA, 1 mM) under an osmotic stress [induced by 15 % (m/v) polyethylene glycol, PEG-6000] were investigated by examining morphological and physiological attributes in Brassica species. The osmotic stress reduced the fresh and dry masses, leaf relative water content (RWC), and chlorophyll (Chl) content, whereas increased the proline (Pro), malondialdehyde (MDA), and H₂O₂ content, and lipoxygenase (LOX) activity. The ascorbate content in B. napus, B. campestris, and B. juncea decreased, increased, and remained unaltered, respectively. The dehydroascorbate (DHA) content increased only in B. napus. The AsA/DHA ratio was reduced by the osmotic stress in all the species except B. juncea. The osmotic stress increased the glutathione (GSH) content only in B. juncea, but increased the glutathione disulfide (GSSG) content and decreased the GSH/GSSG ratio in all the species. The osmotic stress increased the activities of ascorbate peroxidase (APX) (except in B. napus), glutathione reductase (GR) (except in B. napus), glutathione S-transferase (GST) (except in B. juncea), and glutathione peroxidase (GPX), and decreased the activities of catalase (CAT) and monodehydroascorbate reductase (MDHAR) (only in B. campestris). The osmotic stress decreased the glyoxalase I (Gly I) and increased glyoxalase II (Gly II) activities. The application of AsA in combination with PEG improved the fresh mass, RWC, and Chl content, whereas decreased the Pro, MDA, and H₂O₂ content in comparison with PEG alone. The AsA addition improved AsA-GSH cycle components and improved the activities of all antioxidant and glyoxalase enzymes in most of the cases. So, exogenous AsA improved physiological adaptation and alleviated oxidative damage under the osmotic stress by improving the antioxidant and glyoxalase systems. According to measured parameters, B. juncea can be recognized as more drought tolerant than B. napus and B. campestris.     

Integration of Brassica A genome genetic linkage map between Brassica napus and B. rapa.

An integrated linkage map between B. napus and B. rapa was constructed based on a total of 44 common markers comprising 41 SSR (33 BRMS, 6 Saskatoon, and 2 BBSRC) and 3 SNP/indel markers. Between 3 and 7 common markers were mapped onto each of the linkage groups A1 to A10. The position and order of most common markers revealed a high level of colinearity between species, although two small regions on A4, A5, and A10 revealed apparent local inversions between them. These results indicate that the A genome of Brassica has retained a high degree of colinearity between species, despite each species having evolved independently after the integration of the A and C genomes in the amphidiploid state. Our results provide a genetic integration of the Brassica A genome between B. napus and B. rapa. As the analysis employed sequence-based molecular markers, the information will accelerate the exploitation of the B. rapa genome sequence for the improvement of oilseed rape.     

The morphology, cytology, and C-banded karyotypes of Brassica campestris, B. oleracea, and B. napus plants regenerated from protoplasts

The behaviour of Brassica campestris (2n=20, AA), B. oleracea (2n=18, CC), and B. napus (2n=38, AACC) were studied during a tissue-culturing process. Hypocotyl-protoplasts were cultivated into calli from which new plants were regenerated. The regenerated plants were compared, and mitotic root-tip cells were C-banded and karyotyped. A majority of the plants were tetraploid. The meioses were studied in the PMCs. A number of abberations were observed, mainly due to faulty spindle function. There was a difference between the three species in that B. campestris performed the most poorly with many fewer regenerated plants. These plants were more morphologically disturbed and had more problems during pollen production than B. oleracea and B. napus plants.     

Male sterility caused by cytoplasm of Brassica oxyrrhina in B. campestris and B. juncea

Summary Synthetic alloploid Brassica oxyrrhina (2n = 18, OO) x B. campestris (2n = 20, AA) was repeatedly backcrossed with B. campestris to place B. campestris nucleus in the cytoplasm of B. oxyrrhina. Alloplasmic plants, obtained in BC₅ generation, were stably male sterile but mildly chlorotic during initial development. Synthetic alloploid B. oxyrrhina-campestris was also hybridized with B. juncea to transfer B. oxyrrhina cytoplasm. Segregation for green and chlorotic plants was observed in BC₁ and BC₂ generations. By selection, however, normal green male sterile B. juncea was obtained in BC₃. Pollen abortion in both B. campestris and B. juncea is post-meiotic.     

芸薹属A，B和C基因组之间关系研究进展

芸薹属A,B和C基因组之间的亲缘关系近年来取得了很大进展,大量细胞遗传学和分子生物学的研究结果表明A和C基因组之间的亲缘关系较A和B基因组以及B和C基因组之间更为接近。A,B和C基因组之间的比较基因组结果表明,这3个基因组是由更加原始物种进化而来的。在芸薹属基因组演化过程中发生了大量的染色体变异,如重复、缺失、重排等,从而造成了现在不同基因组之间的差别。最后,文章对芸薹属不同基因组和拟南芥基因组之间的亲缘关系进行了综述。     

Comparison of Flowering Time Genes in Brassica Rapa, B. Napus and Arabidopsis Thaliana

The major difference between annual and biennial cultivars of oilseed Brassica napus and B. rapa is conferred by genes controlling vernalization-responsive flowering time. These genes were compared between the species by aligning the map positions of flowering time quantitative trait loci (QTLs) detected in a segregating population of each species. The results suggest that two major QTLs identified in B. rapa correspond to two major QTLs identified in B. napus. Since B. rapa is one of the hypothesized diploid parents of the amphidiploid B. napus, the vernalization requirement of B. napus probably originated from B. rapa. Brassica genes also were compared to flowering time genes in Arabidopsis thaliana by mapping RFLP loci with the same probes in both B. napus and Arabidopsis. The region containing one pair of Brassica QTLs was collinear with the top of chromosome 5 in A. thaliana where flowering time genes FLC, FY and CO are located. The region containing the second pair of QTLs showed fractured collinearity with several regions of the Arabidopsis genome, including the top of chromosome 4 where FRI is located. Thus, these Brassica genes may correspond to two genes (FLC and FRI) that regulate flowering time in the latest flowering ecotypes of Arabidopsis.     

In vitro multiplication of a sterile interspecific hybrid,Brassica fruticulosa x B. campestris

In vitro methods for plant multiplication of a sterile interspecific hybrid between Brassica fruticulosa and B. campestris through either micropropagation or callus regeneration is described. Shoot-tip, single-node and leaf explants, obtained from in vitro-grown hybrids, regenerated on media containing NAA and BA. In vitro application of colchicine induced chromosome doubling in in vitro-regenerated shoots resulting in the production of fertile amphidiploids. Comparative studies on regeneration potential of the hybrid and its parents were also carried out using callus from leaf explants. The explants of B. fruticulosa and the hybrid were capable of shoot and root formation while those of B. campestris failed to form shoots but produced profuse roots. The results demonstrate the efficacy of an in vitro method in producing a large number of hybrid plants and fertile amphidiploids from incompatible crosses that yield very few hybrid seeds/seedlings.Abbreviations BA benzyladenine - CMS cytoplasmic male sterile - AA diploid genome of B. campestris - FF diploid genome of B. fruticulosa - NAA -naphthaleneacetic acid