Predicted distributions and abundances of the sea turtle ‘lost years’ in the western North Atlantic Ocean

Oceanic dispersal characterizes the early juvenile life-stages of numerous marine species of conservation concern. This early stage may be a ‘critical period’ for many species, playing an overriding role in population dynamics. Often, relatively little information is available on their distribution during this period, limiting the effectiveness of efforts to understand environmental and anthropogenic impacts on these species. Here we present a simple model to predict annual variation in the distribution and abundance of oceanic-stage juvenile sea turtles based on species’ reproductive output, movement and mortality. We simulated dispersal of 25 cohorts (1993–2017) of oceanic-stage juveniles by tracking the movements of virtual hatchling sea turtles released in a hindcast ocean circulation model. We then used estimates of annual hatchling production from Kemp's ridley Lepidochelys kempii (n = 3), green Chelonia mydas (n = 8) and loggerhead Caretta caretta (n = 5) nesting areas in the northwestern Atlantic (inclusive of the Gulf of Mexico, Caribbean Sea and eastern seaboard of the U.S.) and their stage-specific mortality rates to weight dispersal predictions. The model's predictions indicate spatial heterogeneity in turtle distribution across their marine range, identify locations of increasing turtle abundance (notably along the U.S. coast), and provide valuable context for temporal variation in the stranding of young sea turtles across the Gulf of Mexico. Further effort to collect demographic, distribution and behavioral data that refine, complement and extend the utility of this modeling approach for sea turtles and other dispersive marine taxa is warranted. Finally, generating these spatially-explicit predictions of turtle abundance required extensive international collaboration among scientists; our findings indicate that continued conservation of these sea turtle populations and the management of the numerous anthropogenic activities that operate in the northwestern Atlantic Ocean will require similar international coordination.     

When ‘blood speaks’: naming the father and the mystics of kinship in Dominica,Eastern Caribbean

This article explores the mystical implication of fathers in reproduction in Dominica, Eastern Caribbean. It traces naming acts that assign paternity at various points in the filial life course, each attempting to disambiguate paternity. Confronting a recurring anthropological problematic – the problem of paternity (paternity's inherent putativity) – the article argues that Dominicans contest uncertain physical fatherhood through the proverb ‘blood speaks’. The article elaborates how relatedness reveals itself in the subtle bodies of kin at three moments: through a local version of the couvade (‘sympathetic pregnancy’); in elders’ post-partum ritual scrutiny of children's bodies for familial resemblances; and during serendipitous encounters in later life. The article highlights how physical fatherhood is disclosed in fathers’ and children's symptoms, appearances, and sensations, revealing their kinship in transpersonal terms. Therefore, blood ‘speaks’ to counter broad-brushed narratives of Caribbean fatherly absence by revealing the physical and spiritual significance of fatherhood. Herein, the article revives classic anthropological debates on legitimacy, the couvade, and Caribbean kinship, whilst contributing to contemporary theorizations of blood and naming.     

An extension of the ‘marker regression’ method to interactive QTL

A regression mapping approach to localize simultaneously two unlinked interactive QTL is proposed. It extends the simple marker regression method of Kearsey and Hyne (1994) to the case of two linkage groups, each with a single QTL having no additive (main) effect, and acting only through epistasis (interaction between a pair of QTL). It allows the localization of the two QTL on the two linkage groups involved by a least square method, which is theoretically more precise than the classical study of interactions between pairs of markers. An application of the method to interactive QTL controlling plant height in bread wheat is presented. Further possible developments are briefly discussed.     

No evidence for an ‘evolution of increased competitive ability’ for the invasive Lepidium draba

The ‘evolution of increased competitive ability’ (EICA) hypothesis states that reduced herbivory in the introduced range causes an evolutionary shift in resource allocation from herbivore defense to growth. Therefore, according to EICA, introduced genotypes are expected to grow more vigorously than conspecific native genotypes when cultivated under common standardized conditions. The EICA hypothesis also assumes that herbivores will perform better on introduced genotypes compared to native genotypes, because they are less well defended. However, selection for either defense or growth will depend on the type of defense (quantitative or qualitative) employed by the plant, and whether the plant is released from generalist or specialist herbivores. The predictions of the EICA hypothesis might be reversed if a plant experiences increased generalist herbivore pressure in the introduced range, and therefore invests more in qualitative defense. We examined this idea with the invasive perennial mustard, Lepidium draba. We grew a total of 16 populations of L. draba from both its native European and introduced western US ranges under common conditions in a greenhouse. We also tested for differences in plant resistance to the specialist herbivore, Psylliodes wrasei, by conducting a leaf disc feeding bioassay with native and introduced L. draba genotypes. Furthermore, we quantified the generalist herbivore load on L. draba in both ranges in order to assess the selection pressure for increased qualitative defense. Contrary to the original EICA prediction, all plant traits (biomass, number of shoots, length and diameter of longest leaf) tended to be greater for the native, rather than introduced L. draba genotypes. There was no significant difference in the proportion of leaf area consumed by the specialist herbivore between native and introduced genotypes. The generalist herbivore load on L. draba was significantly greater in the introduced range. Our data suggest that the EICA hypothesis does not explain the invasion success of L. draba in the US. Instead, we propose that the reduced vigor of introduced genotypes may be due to selection for increased defense against generalist herbivores in the introduced range.     

Do you have an important discovery ready for rapid publication? Submit to JIPB’s ‘Letter to the Editor’

正JIPB has launched a new publication category:Letter to the Editor(LTE).These rapid communications are short articles for original research with a high degree of novelty,representing a breakthrough in understanding important biological processes that will be of interest to a wide plant science audience.     

The enhanced expression of heat stress-related genes in scleractinian coral ‘Porites harrisoni’ during warm episodes as an intrinsic mechanism for adaptation in ‘the Persian Gulf’

Coral Reefs - Shallow water tropical reefs are widely threatened by anthropogenic ocean warming which sometimes exceeds their thermal tolerance limit. The majority of reefs have been currently...     

Drosophila (Diptera: Drosophilidae) survey in an ‘island’ of xerophytic vegetation within the Atlantic Forest biome,with emphasis on the repleta species group

This work performed a seasonal and spatial survey of Drosophila groups, focusing on the repleta group species, in an enclave of xerophytic vegetation in the Araucaria forest phytophysiognomy. The Drosophilidae community, in terms of Drosophila groups, was seasonally affected probably because of cold winters of the highland Araucaria forest surveyed. The spatial variation of groups was not significant, but distinct distributions were observed, both in height and related to the fragment edge/interior, for some groups. Regarding the repleta group, no clear pattern of species seasonal and spatial distribution was detected, probably due to the observation that some species were collected in different seasons and occupied different regions of the area. The considerably high abundance of D. senei, compared to other studies, is one aspect that should be better investigated.     

An overview of historical changes in the fishing gear and practices of pelagic longliners,with particular reference to Japan’s Pacific fleet

We identify changes in pelagic longline fishing gear and practices that need to be accounted for in stock assessments. Pelagic longline fishers have continuously modified their fishing gear and practices to improve fishing power and catchability, which has altered the relationship between catch rates and abundance. Advances in technology resulted in the introduction of many electronic devices to assist in navigation, communication and finding target species. The development of synthetic materials allowed improvements to lines and hooks that increased the probability of hooking target species and landing them. Other changes increased fishing power by improving searching efficiency (e.g., satellite imagery) or the time spent on fishing grounds (e.g., freezers). The number of hooks deployed in daily longlining operations has steadily increased since 1950. However, mean soak time did not change significantly because faster longline retrieval and deployment speeds balanced the increased hook numbers. There has been a shift from having all baits available at dawn, to having more available at dusk and at night. In the 1970s, several longline fleets began to exploit a much greater depth range, resulting in increased catchability for deep-dwelling species (e.g., bigeye tuna, Thunnus obesus) and reduced catchability for epipelagic species like blue marlin (Makaira nigricans). Research has been mostly limited to the effects of longline depth on the catchability of target species. Recent experiments have quantified the effects of bycatch mitigation measures on fishing power and catchability. Progressive improvements in expertise and technological improvements in the gear will also affect fishing power, but are particularly difficult to quantify.     

Stable isotope stratigraphy across the K/T boundary, and isotopic investigations of an ‘Ignored’ worm bed, Eastern Desert, Egypt

Summary Oxygen and carbon stable isotope profiles of the Dakhla sequence at the Eastern Desert, Egypt, reveal that the negative isotopic excursion commonly observed at the K/T boundary in sections showing continuous deposition around the world (e.g. El Kef section at Tunisia,Perch-Nielsen et al.; 1982 and at Zumaya, Spain;Mount et al., 1986) is missing in this Egyptian study area. However, several negative isotopic excursions are observed both under and over the boundary separating the Upper Cretaceous and Paleocene rocks. These excursions correspond to short-term sea level falls and coincide with both lithologic and faunal changes. They occur during periods with a decreasing influence of the equator-dominated ocean circulation system and the set up of a polar-dominated ocean circulation system. The Dakhla sequence consists of cyclic alternations of thick hemipelagic marls and shales and thin benthic limestone beds. The origin of the cyclic alternation is related to short-term sea level changes. A thin reefal worm bed is observed within the lower part of the sequence. The formation of this worm buildup occurred during a stillstand prior to sea level fall. The oxygen isotopic composition of the unaltered worm tubes (−1.0 to −2.7 ‰ PDB) is in accord with their formation in equilibrium with unmodified seawater. Meanwhile, their relatively depleted carbon isotopic values (−4.9 to −6.1 ‰ PDB) are primarily related to vital effect. Some intraskeletal voids within the worm bed are filled by a late meteoric calcite cement. The meteoric origin of the cement mosaics is indicated from their relatively depleted oxygen isotope values (−3.3 to −5.9 ‰ PDB), their equant morphology and their mottled dull luminescence.     

‘The importance of symbiosis in philosophy of biology: an analysis of the current debate on biological individuality and its historical roots’

Symbiosis plays a fundamental role in contemporary biology, as well as in recent thinking in philosophy of biology. The discovery of the importance and universality of symbiotic associations has brought new light to old debates in the field, including issues about the concept of biological individuality. An important aspect of these debates has been the formulation of the hologenome concept of evolution, the notion that holobionts are units of natural selection in evolution. This review examines the philosophical assumptions that underlie recent proposal of the hologenome concept of evolution, and traces those debates back in time to their historical origins, to the moment when the connection between the topics of symbiosis and biological individuality first caught the attention of biologists. The review is divided in two parts. The first part explores the historical origins of the connection between the notion of symbiosis and the concept of biological individuality, and emphasizes the role of A. de Bary, R. Pound, A. Schneider and C. Merezhkowsky in framing the debate. The second part examines the hologenome concept of evolution and explores four parallelisms between contemporary debates and the debates presented in the first part of the essay, arguing that the different debates raised by the hologenome concept were already present in the literature. I suggest that the novelty of the hologenome concept of evolution lies in the wider appreciation of the importance of symbiosis for maintaining life on Earth as we know it. Finally, I conclude by suggesting the importance of exploring the connections among contemporary biology, philosophy of biology and history of biology in order to gain a better understanding of contemporary biology.     

An anatomical study of ovary-to-cuke development in consistently low-producing trees of the ‘Fuerte’ avocado (Persea americana Mill.) with special reference to seed abortion

Summary Cukes develop from female-sterile, cryptically male flowers on consistently low-producing Fuerte trees. A hypostase that has, as yet, not been reported for the avocado, is present in the chalazal tissue of the mature ovule and aborting seed. This layer seems to play a role in the degeneration of the peripheral nucellar tissue and the non-development of the intercalary meristem of the pachychalaza. The ultimate cause of cuke formation, however, seemingly lies in the disturbance of the polarity of the primordial nucellar tissue. Additional megagametophytes and non-functional megaspores that develop in the nucellus effect the collapse of the chalazal region of the embryo sac. Degeneration of these gametophytes and megaspores causes the formation of nucellar cavities that isolate the embryo sac from the nutritive tissues and chalazal flow of nutrients. The micropylar region of the embryo sac contains a well-developed egg cell, synergids and central cell nucleus. An embryo and a limited amount of endosperm tissue are formed. Because the endosperm is starved of nutrients, the formation of this tissue is curtailed at an early stage, and embryo development ceases. A meristematic zone that initiates from the inner layers of the outer integument, directly opposite the place where the vascular supply to the chalaza terminates, causes abnormal growth in the outer integument. It is suggested that, due to the absence of meristematic activity in the chalazal region of the embryo sac and the non-developing pachychalaza, resources are redistributed towards the stronger sink, i.e. the outer integument. Consequently, this part of the seed coat proliferates, while the embryo sac and pachychalaza degenerate. In spite of the abortion of the seed, the pericarp of the cuke continues to develop, possibly because the pericarp of the avocado contains phytohormones.     

Host range of Gonatocerus sp. near tuberculifemur ‘Clade 1’ in Argentina, an egg parasitoid newly associated to the glassy-winged sharpshooter, Homalodisca vitripennis (Hemiptera: Cicadellidae), and candidate for its biological control in California, USA

The South American egg parasitoid Gonatocerus sp. near tuberculifemur “Clade 1” (G. sp. “Clade 1”) (Hymenoptera: Mymaridae) is a new association of the glassy-winged sharpshooter (GWSS), Homalodisca vitripennis (Germar) (Cicadellidae) and a candidate for its biological control in California, USA. In Argentina, G. sp. “Clade 1” was screened in the laboratory (no-choice tests) and in the field (multiple choice tests) against eggs of 32 Auchenorrhyncha host species and other four potential hosts unrelated to sharpshooters. In no-choice assays, it parasitized only eggs within the leafhopper tribe Proconiini. In contrast, in the long term field tests, it emerged not only from eggs of the Proconiini but also from two species of Cicadellini at low numbers (five wasps out of 698 exposed eggs). Two interpretations arise from the results: (1) Host associations of G. sp. “Clade 1” are restricted to the Proconiini whereas field parasitization of the Cicadellini species were false positive, or (2) G. sp. “Clade 1” parasitizes also some Cicadellini species and its rejection in the laboratory was a false negative. Both interpretations are discussed. Insect motivation could be the explanation for the negative results in the no-choice tests. On the other hand, in the more natural field situations, the host selection process and oviposition behavior should not have been affected and host range would be more realistic. The parasitism of the Cicadellini species would be indicative of a potential non-target effect on the sharpshooters in the USA.     

A new pear scab resistance gene Rvp1 from the European pear cultivar ‘Navara’ maps in a genomic region syntenic to an apple scab resistance gene cluster on linkage group 2

Scab, caused by the ascomycete fungus Venturia pirina, leads to severe damage on European pear varieties resulting in a loss of commercial value and requiring frequent use of fungicides. Identifying scab resistance genes, developing molecular markers linked to these genes and establishing marker-assisted selection would be an effective way to improve European pear breeding for scab resistance. Most of the European pear cultivars (Pyrus communis) are currently reported to be sensitive. The pear cultivar ‘Navara’ was shown to carry a major scab resistance gene whose phenotypic expression in seedling progenies was a typical stellate necrosis symptom. The resistance gene was called Rvp1, for resistance to V. pirina, and was mapped on linkage group 2 of the pear genome close to microsatellite marker CH02b10. This genomic region is known to carry a cluster of scab resistance genes in apple indicating a first functional synteny for scab resistance between apple and pear.     

Somatic embryogenesis in sugarcane—An addendum to the invited review ‘sugarcane biotechnology: The challenges and opportunities,’ in vitro cell. Dev. Biol. Plant 41(4):345–363; 2005

Summary Since the 1960s, numerous studies on sugarcane plant regeneration have been reported. Essentially, successful culture and regeneration of plants from protoplasts, cells, callus, and various tissue and organs, have been achieved in this crop. Although plant regeneration from callus cultures had been reported since the 1960s, definitive proof of somatic embryo development was not available until 1983. Since then, considerable progress has been made in understanding and refining somatic embryogenesis and plant regeneration in sugarcane, for which development of an efficient embryogenic system was critical for the application of transgenic technology. Recent research in Australia and South Africa has led to the development of direct somatic embryogenic systems, which may improve transgenesis in sugarcane.     

An efficient method to handle the ‘large <Emphasis Type="Italic">p</Emphasis>, small <Emphasis Type="Italic">n</Emphasis>’ problem for genomewide association studies using Haseman–Elston regression

The ‘large p, small n’ problem in genomewide association studies (GWAS) is an important subject in genetic studies. Many approaches have been proposed for this issue, but none of them successfully combine the Haseman–Elston (H–E) regression with sliding-window scan approaches in GWAS. In this article, we extended H–E regression to GWAS, and replaced original data with different measurements of phenotype of sib pairs. Meanwhile, we also applied hidden Markov model to infer identity by state. Using subsequent simulation studies, we found that it had higher statistical power than the corresponding single-marker association studies. The advantage of the H–E regression was also sufficient to capture about 48.01% of the quantitative trait locus (QTL). Meanwhile, the results show that the power decreases with the increase in the number of QTLs, and the power of H–E regression is sensitive to heritability.