Application of a simplified marker-assisted backcross technique for hybrid breeding in rice

Hybrid rice has contributed greatly to the self-sufficiency of the food supply in China. However, bacterial blight is a major disease that limits hybrid rice production in China. The study was conducted to develop an efficient breeding technique to improve the bacterial blight resistance in hybrid rice. A marker-assisted backcross breeding technique was adopted to improve HN189, an elite restorer line containing the Pi1 gene. This breeding technique was simplified to foreground selection with only one generation of backcrossing and background selection based on phenotypic selection. A novel bacterial blight resistance gene, Xa23, was introgressed into HN189. Two improved restorer lines, HBH145 (with one generation of backcrossing) and HBH146 (with two generations of backcrossing), were obtained that had a significant bacterial blight resistance advantage over HN189. The corresponding hybrid combination Tianyou H145 (Tianfeng A / HBH145) was certified one year earlier than Qianyou H146 (Qianjiang 1A / HBH146). The use of the marker-assisted backcross breeding technique with one generation of backcrossing and without background selection in rice breeding programs shortened the breeding period of the rice.     

大豆SSR标记辅助遗传背景选择的效果分析

本研究利用鲁豆4号回交转育的大豆种子脂氧酶缺失株系为材料,用IEF-PAGE鉴定大豆种子脂氧酶缺失基因,SSR标记进行遗传背景分析,通过遗传背景回复率相关分析,探索分子标记辅助遗传背景选择时所需的适宜的标记数和选择方式,期望获得可进一步回的鲁豆4号脂氧酶缺失株系。研究明确了大豆SSR标记辅助背景选择时适宜标记数目和选择方式,即先用少数标记初筛,选出遗传背景回复率较高的材料,再用适宜标记鉴定,随着世代递增,已恢复为轮回亲本的标记住点不再分析,逐代减少选择标记数目。获得了合有脂氧酶缺失基因,遗传背景与鲁豆4号差异较小的株系,可用鲁玉4号进一步回交,从而加速培育鲁豆4号脂氧酶缺失近等基因系。     

Fitness Impact and Stability of a Transgene Conferring Resistance to Dengue-2 Virus following Introgression into a Genetically Diverse Aedes aegypti Strain

In 2006, we reported a mariner (Mos1)-transformed Aedes aegypti line, Carb77, which was highly resistant to dengue-2 virus (DENV2). Carb77 mosquitoes expressed a DENV2-specific inverted-repeat (IR) RNA in midgut epithelial cells after ingesting an infectious bloodmeal. The IR-RNA formed double-stranded DENV2-derived RNA, initiating an intracellular antiviral RNA interference (RNAi) response. However, Carb77 mosquitoes stopped expressing the IR-RNA after 17 generations in culture and lost their DENV2-refractory phenotype. In the current study, we generated new transgenic lines having the identical transgene as Carb77. One of these lines, Carb109M, has been genetically stable and refractory to DENV2 for >33 generations. Southern blot analysis identified two transgene integration sites in Carb109M. Northern blot analysis detected abundant, transient expression of the IR-RNA 24 h after a bloodmeal. Carb109M mosquitoes were refractory to different DENV2 genotypes but not to other DENV serotypes. To further test fitness and stability, we introgressed the Carb109M transgene into a genetically diverse laboratory strain (GDLS) by backcrossing for five generations and selecting individuals expressing the transgene''s EGFP marker in each generation. Comparison of transgene stability in replicate backcross 5 (BC₅) lines versus BC₁ control lines demonstrated that backcrossing dramatically increased transgene stability. We subjected six BC₅ lines to five generations of selection based on EGFP marker expression to increase the frequency of the transgene prior to final family selection. Comparison of the observed transgene frequencies in the six replicate lines relative to expectations from Fisher''s selection model demonstrated lingering fitness costs associated with either the transgene or linked deleterious genes. Although minimal fitness loss (relative to GDLS) was manifest in the final family selection stage, we were able to select homozygotes for the transgene in one family, Carb109M/GDLS.BC₅.HZ. This family has been genetically stable and DENV2 refractory for multiple generations. Carb109M/GDLS.BC₅.HZ represents an important line for testing proof-of-principle vector population replacement.     

Introgression of stem rust resistance genes SrTA10187 and SrTA10171 from Aegilops tauschii to wheat

Aegilops tauschii, the diploid progenitor of the wheat D genome, is a readily accessible germplasm pool for wheat breeding as genes can be transferred to elite wheat cultivars through direct hybridization followed by backcrossing. Gene transfer and genetic mapping can be integrated by developing mapping populations during backcrossing. Using direct crossing, two genes for resistance to the African stem rust fungus race TTKSK (Ug99), were transferred from the Ae. tauschii accessions TA10187 and TA10171 to an elite hard winter wheat line, KS05HW14. BC₂ mapping populations were created concurrently with developing advanced backcross lines carrying rust resistance. Bulked segregant analysis on the BC₂ populations identified marker loci on 6DS and 7DS linked to stem rust resistance genes transferred from TA10187 and TA10171, respectively. Linkage maps were developed for both genes and closely linked markers reported in this study will be useful for selection and pyramiding with other Ug99-effective stem rust resistance genes. The Ae. tauschii-derived resistance genes were temporarily designated SrTA10187 and SrTA10171 and will serve as valuable resources for stem rust resistance breeding.     

Induced Resistance to 6-Methylpurine and Cycloheximide in Tetrahymena. I. Germ Line Mutants of T. THERMOPHILA

Two new mutant lines of Tetrahymena thermophila ( T. pyriformis, syngen 1), each conferring resistance to a different agent, are described. Resistance to cycloheximide and 6-methylpurine are each determined by dominant genes, ChxA2 and Mpr; the traits show phenotypic assortment. The method used to select these mutations, the critical importance of backcrossing to wild type following mutagenesis, and the utility of these marker genes in further mutagenic selection schemes and studies of the sexual cycle of Tetrahymena are noted.     

Selection with recurrent backcrossing to develop congenic lines for quantitative trait loci analysis.

SEWALL WRIGHT suggested that genes of large effect on a quantitative trait could be isolated by recurrent backcrossing with selection on the trait. Loci [quantitative trait loci (QTL)] at which the recurrent and nonrecurrent lines have genes of different large effect on the trait would remain segregating, while other loci would become fixed for the gene carried by the recurrent parent. If the recurrent line is inbred and the backcrossing and selection is conducted in a series of replicate lines, in each of which only one backcross parent is selected for each generation, the lines will become congenic to the recurrent parent except for the QTL of large effect and closely linked regions of the genome, and these regions can be identified using a dense set of markers that differ between the parental lines. Such lines would be particularly valuable for subsequent fine-scale mapping and gene cloning; but by chance, even QTL of large effect will be lost from some lines. The probability that QTL of specified effect remain segregating is computed as a function of its effect on the trait, the intensity of selection, and the number of generations of backcrossing. Analytical formulas are given for one or two loci, and simulation is used for more. It is shown that the method could have substantial discriminating ability and thus potential practical value.     

Marker-assisted introgression of qHSR1 to improve maize resistance to head smut

Head smut, one of the most devastating diseases in maize, causes severe yield losses worldwide. Resistance to head smut has been proven to be a quantitative inherited trait. In our previous study, a major resistance quantitative trait locus (named qHSR1) was detected on maize chromosome 2 (bin 2.09), and a number of molecular markers have been developed in the qHSR1 region. Here, we report the marker-assisted introgression of qHSR1 to improve maize resistance to head smut. The 10 maize inbred lines, namely Ji853, 444, 98107, 99094, Chang7-2, V022, V4, 982, 8903, and 8902, which have high yield potential but are susceptible to head smut, were selected for resistance improvement. Each of the 10 high-yielding lines was crossed with a donor parent Ji1037 that is completely resistant to head smut, followed by five generations of backcrossing to the respective recurrent parent. Marker-assisted foreground selection was conducted to identify qHSR1. Recombinant selection was carried out in the fourth backcross (BC4) generation by using the flanking markers to reduce the size of the Ji1037 donor segment carrying qHSR1. Background selection was performed in the BC5 generation with genome-wide SSR markers to select the line with the highest recovery rate of the recurrent parent genome. Self-pollination was conducted twice for the BC5 plant with both the shortest qHSR1 region and the highest recovery rate to obtain converted inbred lines harboring qHSR1. The 10 converted inbred lines all showed substantial improvement in resistance to head smut. Furthermore, the hybrids prepared from the converted lines also showed significant increase in resistance to head smut, while remaining mostly unchanged for other agronomic traits.     

Identification and reciprocal introgression of a QTL affecting body mass in mice

The aim of this study was to examine the effects of a QTL in different genetic backgrounds. A QTL affecting body mass on chromosome 6 was identified in an F₂ cross between two lines of mice that have been divergently selected for this trait. The effect of the QTL on mass increased between 6 and 10 weeks of age and was not sex-specific. Body composition analysis showed effects on fat-free dry body mass and fat mass. To examine the effect of this QTL in different genetic backgrounds, the high body mass sixth chromosome was introgressed into the low body mass genetic background and vice versa by repeated marker-assisted backcrossing. After three generations of backcrossing, new F₂ populations were established within each of the introgression lines by crossing individuals that were heterozygous across the sixth chromosome. The estimated additive effect of the QTL on 10-week body mass was similar in both genetic backgrounds and in the original F₂ population (i.e., ~0.4 phenotypic standard deviations); no evidence of epistatic interaction with the genetic background was found. The 95% confidence interval for the location of the QTL was refined to a region of approximately 7 cM between D6Mit268 and D6Mit123.     

Non‐GMO potato lines,synthesizing increased amylose and resistant starch,are mainly deficient in isoamylase debranching enzyme

Solanum tuberosum potato lines with high amylose content were generated by crossing with the wild potato species Solanum sandemanii followed by repeated backcrossing to Solanum tuberosum lines. The trait, termed increased amylose (IAm), was recessive and present after three generations of backcrossing into S. tuberosum lines (6.25% S. sandemanii genes). The tubers of these lines were small, elongated and irregular with small and misshaped starch granules and high sugar content. Additional backcrossing resulted in less irregular tuber morphology, increased starch content (4.3%–9.5%) and increased amylose content (29%–37.9%) but indifferent sugar content. The amylose in the IAm starch granules was mainly located in peripheral spots, and large cavities were found in the granules. Starch pasting was suppressed, and the digestion‐resistant starch (RS) content was increased. Comprehensive microarray polymer profiling (CoMPP) analysis revealed specific alterations of major pectic and glycoprotein cell wall components. This complex phenotype led us to search for candidate IAm genes exploiting its recessive trait. Hence, we sequenced genomic DNA of a pool of IAm lines, identified SNPs genome wide against the draft genome sequence of potato and searched for regions of decreased heterozygosity. Three regions, located on chromosomes 3, 7 and 10, respectively, displayed markedly less heterozygosity than average. The only credible starch metabolism‐related gene found in these regions encoded the isoamylase‐type debranching enzyme Stisa1. Decreased expression of mRNA (>500 fold) and reduced enzyme activity (virtually absent from IAm lines) supported Stisa1 as a candidate gene for IAm.     

Selection strategies for marker-assisted backcrossing with high-throughput marker systems

Application of marker-assisted backcrossing for gene introgression is still limited by the high costs of marker analysis. High-throughput (HT) assays promise to reduce these costs, but new selection strategies are required for their efficient implementation in breeding programs. The objectives of our study were to investigate the properties of HT marker systems compared to single-marker (SM) assays, and to develop optimal selection strategies for marker-assisted backcrossing with HT assays. We employed computer simulations with a genetic model consisting of 10 chromosomes of 160 cM length to investigate the introgression of a dominant target gene. We found that a major advantage of HT marker systems is that they can provide linkage maps with equally spaced markers, whereas the possibility to provide linkage maps with high marker densities smaller than 10 cM is only of secondary use in marker-assisted backcrossing. A three-stage selection strategy that combines selection for recombinants at markers flanking the target gene with SM assays and genome-wide background selection with HT markers in the first backcross generation was more efficient than genome-wide background selection with HT markers alone. Selection strategies that combine SM and HT assays were more efficient than genome-wide background selection with HT assays alone. This result was obtained for a broad range of cost ratios of HT and SM assays. A further considerable reduction of the costs could be achieved if the population size in the first backcross generation was twice the population size in generations BC₂ and BC₃ of a three-generation backcrossing program. We conclude that selection strategies combining SM and HT assays have the potential to greatly increase the efficiency and flexibility of marker-assisted backcrossing.     

Competition between Mitochondrial Haplotypes in Distinct Nuclear Genetic Environments: Drosophila Pseudoobscura Vs. D. Persimilis

A test for coadaptation of nuclear and mitochondrial genomes was performed using the sibling species, Drosophila pseudoobscura and D. persimilis. Two lines of flies with ``disrupted' cytonuclear genotypes were constructed by repeated backcrossing of males from one species to females carrying mitochondrial DNA (mtDNA) from the other species. Each ``disrupted' strain was competed in population cages with the original stock of each species from which the recurrent males were obtained during the backcrossing. As such, the two species' mitochondrial types were competed reciprocally in the nuclear genetic environments of each species. The trajectories of mtDNA haplotypes were followed in discrete-generation population cages using a PCR-four-cutter approach. A significant increase in the frequency of D. pseudoobscura mtDNA was observed in each of four replicate cages with a D. pseudoobscura nuclear background. In the D. persimilis nuclear background, one cage actually showed an increase in frequency of D. pseudoobscura mtDNA, although together the four replicate cages show little change in frequency. These results were repeated after frequency perturbations and reinitiation of each cage. An analysis of fitness components revealed that fertility selection greatly outweighed viability selection in these cytonuclear competition experiments. The asymmetry of the fitnesses of the mtDNA haplotypes on the two genetic backgrounds is consistent in direction with the previously reported asymmetry of female fertility in backcrosses between these two species. While our experiments do not allow us to identify mtDNA as the sole source of fitness variation, at a minimum the data indicate a fitness association between nuclear fertility factors and the D. pseudoobscura mtDNA on its own genetic background.     

Distribution of Il6st mRNA and gp130 glycoprotein in various brain structures of mice that differ in intensity of exaggerated freezing reaction (catalepsy)

The glycoprotein gp130 mediates intracellular transduction of signal from receptors of cytokines belonging to the interleukin-6 group. The linkage of the Il6st gene encoding the gp130 protein to heritable predisposition to hypertrophic freezing reaction (catalepsy) has been demonstrated previously in mice. The aim of the present work was to investigate the levels of Il6st mRNA, as well as the distribution of the gp130 protein and the degree of its glycosylation, in five brain regions of mice of the non-cataleptic AKR/J line and the cataleptic lines CBA/LacJ and congenic line AKR.CBA-D13Mit76, which carries the CBA variant of the Il6st gene in the AKR/J genome. These parameters were also studied in mice of the ASC line obtained by backcrossing CBA and AKR mice with the simultaneous selection for the high predisposition to catalepsy. Maximum levels of unglycosylated and glycosylated forms of the gp130 protein were detected in the midbrains of mice from all investigated lines. The highest levels of Il6st mRNA were found in the midbrain, striatum, and hypothalamus of mice of all lines. The level of Il6st mRNA in the striatum of AKR.CBA-D13Mit76 mice was higher than in the striatum of AKR/J mice. Therefore, one can assume that there is a connection between heritable catalepsy and the increased expression of the Il6st gene in the striatum.     

Identification of quantitative trait loci for grain size and the contributions of major grain-size QTLs to grain weight in rice

Grain weight, one of the three major components of rice yield, is largely determined by grain size, which is controlled by quantitative trait loci (QTLs). In a previous study, we identified qGS5 as a major QTL for grain width. Here, we report our identification of two more major grain-size QTLs (qGL3 and qGW2a) by using a recombinant inbred line (RIL) population from a cross of two indica varieties, ‘Zhenshan 97’ and ‘SLG’. To investigate the contribution of the three grain-size QTLs to final grain weight, we developed near-isogenic lines (NILs) NIL-qGL3, NIL-qGW2a, and NIL-qGS5 and used these to build the combined QTLs–NIL in the genetic background of ‘Zhenshan 97’ by marker-assisted selection and conventional backcrossing, respectively. A BCF₂ population of 957 individuals was developed from the combined QTLs-NIL for further study of the genetic control of grain size. The QTL analysis revealed that qGW2a and qGL3 played more important roles in grain weight gain than qGS5. All three QTLs showed additive effects with respect to grain weight, with no interaction. These results clearly indicate that pyramiding of major grain-size QTLs is a useful approach for improving rice yield.     

Improvement of two traditional Basmati rice varieties for bacterial blight resistance and plant stature through morphological and marker-assisted selection

Bacterial blight (BB) is a major production threat to Basmati, the aromatic rice prized for its unique quality. In order to improve the BB resistance of two elite, traditional BB-susceptible Basmati varieties (Taraori Basmati and Basmati 386), we utilized the strategy of limited marker-assisted backcrossing for introgression of two major BB resistance genes, Xa21 and xa13, coupled with phenotype-based selection for improvement of their plant type and yield. Improved Samba Mahsuri, an elite high-yielding, fine-grain-type BB-resistant rice variety served as donor for BB resistance. Backcross-derived improved Basmati lines at BC1F5 possessing a single resistance gene (i.e. either Xa21 or xa13) displayed moderate resistance to BB, while lines possessing both Xa21 and xa13 showed significantly higher levels of resistance. Two-gene pyramid lines (Xa21 + xa13) possessing good grain and cooking quality similar to their respective traditional Basmati parents, short plant stature (<110 cm plant height) and higher grain yield than the recurrent parent(s) were identified and advanced. This work demonstrates the successful application of marker-assisted selection in conjunction with phenotype-based selection for targeted introgression of multiple resistance genes into traditional Basmati varieties along with improvement of their plant stature and yield.     

Molecular marker-assisted backcrossing breeding: an example to transfer a thermostable β-amylase gene from wild barley

Molecular marker-assisted backcrossing (MABC) is widely recommended for transferring favorable alleles from a donor to an elite variety. The question remains whether MABC is an effective approach to developing a competitive commercial variety. Here, we illustrate the transfer of a thermostable β-amylase allele Sd3 from wild barley into a commercial barley variety Gairdner. The elite lines were chosen for the Regional Crop Variety Test that followed a standard conventional breeding process. The results demonstrated that the Sd3 allele not only increased enzyme thermostability but dramatically enhanced diastatic power, an important malting quality trait. The BC₁F₁ individuals had a fundamental impact on the comprehensive agronomic and quality traits of the final progenies, demonstrating the importance of screening at the early stage of backcrossing in MABC. There was sufficient genetic variation in the BC₃F₃ families to select other malting quality and agronomic traits. Ten individual breeding lines with improved β-amylase thermostability also had improved yields and grain plumpness. Three elite lines with improved malting quality and agronomic traits were selected to provide a parental line to incorporate the wild barley allele for breeding a commercial variety. A new strategy should be considered that uses marker-assisted selection and backcrossing to transfer a favorable allele from a wild parent.     

A hybridisation technique to identify anthelmintic resistance genes in Haemonchus

The identification of genes associated with anthelmintic resistance can be facilitated in Haemonchus contortus by the ability of this species to hybridise with Haemonchus placei. Although the hybrid males are sterile, the lines can be rescued by backcrossing the females to either parental species. Resistance genes can be retained in Haemonchus hybrids, while the unwanted contortus background is removed through backcrossing to H. placei and anthelmintic selection of the progeny. Under this selection, genes involved in resistance would retain the H. contortus nucleotide sequence, while those that are not would either be H. placei or a random mixture of both, depending on the amount of backcrossing that had occurred. The first candidate gene to be tested in this system was a Haemonchus P-glycoprotein, hcpgp-1. hcpgp-1 was amplified, cloned and sequenced from H. contortus and H. placei. Two restriction sites were then identified in the sequenced product; one specific to H. contortus hcpgp-1 and the other found only in the H. placei gene. These genes were identified from macrocyclic lactone selected and non-selected worms by restricting PCR products from individual worms. Fitted occurrence of the H. contortus allele was 49% of unselected worms and 69% of macrocyclic lactone selected worms. The probability of this percentage occurring by chance was P=0.006. Thus macrocyclic lactone selection was acting to increase the percentage of hcpgp-1 from macrocyclic-lactone-resistant CAVRS.     

“缺体回交法”选育普通小麦异代换系方法的研究

利用从蓝单体自交分离得到的自花结实的4D缺体小麦(缺72180、缺天选15)作母本与3个不同的八倍体小偃麦(小偃784、小偃7631和小偃78829)杂交,再以缺体作为轮回亲本,从F_1或F_2开始连续回交1—2次,在回交中,缺体无论作父本或母本都得到了异代换系,并且发现:(1)在回交过程中,用缺体作母本比作父本更为有效;(2)F_1自交,在F_2群体中选择生长比较正常,染色体数比较少的植株回交,比F_1作母本直接回交效果更好。并对所得的异代换系的特征特性进行了初步的观察研究,发现中间偃麦草(Agropyron intermedium2n=42) 4E染色体(以下用4Ei表示)、长穗偃麦草(Agropyron clongatum 2n=70)的4E染色体(带蓝粒基因,以下用4Ee表示)和4F染色体(带毛叶基因,以下用4Fe表示)均能正常补偿小麦4D染色体。异代换系生长旺盛,育性正常。初步总结了缺体与八倍体小偃麦杂交,回交过程中异代换系的形成规律,证明了“缺体回交法”可以推广应用于八倍体小偃麦等人工合成的新物种,以选育普通小麦异代换系。     

Transferring a major QTL for oil content using marker-assisted backcrossing into an elite hybrid to increase the oil content in maize

Maize oil is highly valued as a human vegetable oil and in animal feed. The normal hybrid, Zhengdan958, is one of the most widely distributed varieties in China. To increase its oil content, a favorable allele of a major quantitative trait locus for oil content, qHO6 on chromosome 6 from the high-oil inbred line, By804, was transferred into the two parents of Zhengdan958, Zheng58, and Chang7-2, using marker-assisted backcrossing. Two improved inbred lines, Zheng58-qHO6 and Chang7-2-qHO6, were developed through six generations of backcrosses guided by molecular markers. An approximately 260-kb fragment from the donor parent was transferred into recurrent lines, and over 99 % of recurrent genomes were recovered. Both of the improved inbred lines showed increased oil content of roughly 1 % without a change in grain weight. Consequently, the oil content in improved Zhengdan958-qHO6, crossed from Zheng58-qHO6 to Chang7-2-qHO6, reached 4.5 %, with increases in absolute and relative content of 0.71 and 18 %, respectively, compared with the original Zhengdan958. The grain yield of the improved Zhengdan958-qHO6 ranged from 5,928 to 11,826 kg/ha in ten environments, similar to the original Zhengdan958. This study provides a practical example of the feasibility of improving quantitative traits by transferring desirable alleles using marker-assisted backcrossing.     

The genetics of selfing with concurrent backcrossing in breeding hybrid sugar beet (Beta vulgaris altissima L.)

 Sugar beet hybrids are produced by crossing a cytoplasmic male-sterile (CMS) line with a pollinator. New CMS lines are produced by crossing a fertile plant to an existing CMS line. The fertile plant is also selfed. In the following generation, one of the selfed, fertile progeny is paired and isolated with one of the crossed, CMS progeny, to give a second generation of selfing and crossing. Over a series of such crosses and selfs, a new fertile inbred line and its corresponding, near-isogenic CMS partner are produced. Selection among lines takes place at one or more stages of the backcrossing programme. A method is presented here for calculating the genetic variances and covariances within and between lines and generations based on a derivation of additive genetic relationships modified from an approach widely employed in animal breeding. The genetic variances and covariances are used to predict response to selection from varying strategies, from which optimum schemes can be determined. Results suggest that selection should generally take place after three generations of backcrossing when the fertile plant used to initiate the backcrossing process is not inbred, but can take place after generation two when the fertile plant is inbred. Doubled haploid production is unlikely to provide an extra advantage that would be worthwhile in such a system. The method developed here can be used to explore a wide range of more complex breeding systems. Received: 27 July 1998 / Accepted: 19 October 1998     

Compositional differences between near‐isogenic GM and conventional maize hybrids are associated with backcrossing practices in conventional breeding

Here, we show that differences between genetically modified (GM) and non‐GM comparators cannot be attributed unequivocally to the GM trait, but arise because of minor genomic differences in near‐isogenic lines. Specifically, this study contrasted the effect of three GM traits (drought tolerance, MON 87460; herbicide resistance, NK603; insect protection, MON 89034) on maize grain composition relative to the effects of residual genetic variation from backcrossing. Important features of the study included (i) marker‐assisted backcrossing to generate genetically similar inbred variants for each GM line, (ii) high‐resolution genotyping to evaluate the genetic similarity of GM lines to the corresponding recurrent parents and (iii) introgression of the different GM traits separately into a wide range of genetically distinct conventional inbred lines. The F1 hybrids of all lines were grown concurrently at three replicated field sites in the United States during the 2012 growing season, and harvested grain was subjected to compositional analysis. Proximates (protein, starch and oil), amino acids, fatty acids, tocopherols and minerals were measured. The number of statistically significant differences (α = 0.05), as well as magnitudes of difference, in mean levels of these components between corresponding GM variants was essentially identical to that between GM and non‐GM controls. The largest sources of compositional variation were the genetic background of the different conventional inbred lines (males and females) used to generate the maize hybrids and location. The lack of any compositional effect attributable to GM suggests the development of modern agricultural biotechnology has been accompanied by a lack of any safety or nutritional concerns.