Amplified Fragment Length Polymorphisms (AFLPs) detected with non-radioactive digoxigenine labelled primers in three plant species

A protocol for the detection of AFLPs with the non radioactive digoxigenine labelling is presented. The protocol has been tested on DNA samples from three different plant species. The AFLP technique was used for the first time in these species. The sensitivity and reliability of the digoxigenine labelled primers in the AFLP technique was of the same order as the sensitivity and reliability of the radioactive assay. No major adjustments of the current standard AFLP protocols is necessary to use the digoxigenine labelled primers.     

Direct and indirect immunolabelling of HeLa cells with quantum dots

With excellent optical properties, quantum dots (QDs) have been made as attractive molecular probes for labelling cells in biological research. In this study high‐quality CdSe QDs prepared in a paraffin–oleic acid system were used as fluorescent labels in direct and indirect detection of carcinoembryonic antigen (CEA), a cancer marker expressed on the surface of HeLa cells. The primary antibody (Ab) (rabbit anti‐CEA8) and secondary Ab (goat anti‐rabbit IgG) were covalently linked to carboxyl‐functioned CdSe QDs, and both the QDs–antibody and QDs–IgG probes were successfully used to label HeLa cells. The present study demonstrates the practicability of CdSe QDs as an attractive type of fluorescent labels for biological applications such as protein probes and cell imaging. Copyright © 2008 John Wiley & Sons, Ltd.     

生物素肼化学标记和DIG标记cDNA探针检测柑桔裂皮病类病毒

分别用生物素肼化学标记和ＤＩＧ标记我国柑桔裂皮病类病毒（ＣＥＶｄ）全长克隆ｃＤＮＡ,用以上探讨对不同来源的的核酸样品进行斑点杂交。两种探针可检出病柑桔总核酸的最低含量久为４００ｎｇ／斑点和８０ｎｇ／斑点;生物素肼标记ＣＥＶｄ－ＤＮＡ探讨针,可检出ＣＥＶｄ－ｃＤＮＡ的最低含量约为１０ｐｇ／斑点,研制的ＣＥＶｄ检测试剂盒能检测出发病和隐性带毒苗木中的ＣＥＶｄ,灵敏、特异、简便、快速。试剂盒已使用于检测     

Stimulation par la lumière rouge lointain de la synthèse de la δ-aminolévulinate déshydratase des cotylédons de radis

Stimulation of de novo synthesis of δ-aminolevulinate dehydralasc of radishes grown under far-red light .
Density labelling studies of δ-aminolevulinate dehydratase (ALAD) in cotyledons of radish ( Raphanus sativus L. cv. Longue Rave Saumonée) seedlings demonstrate that far-red light stimulates de novo synthesis of ALAD and that the turn-over of this enzyme is very poor. Cycloheximide reduces considerably both the increase of ALAD activity and the incorporation of deuterium in ALAD, which indicates that ALAD synthesis depends upon cytoplasmic ribosomes.     

Investigation of antigenic expression of Bacteroides fragilis by immunogold labelling and immunoblotting with a monoclonal antibody

Abstract Electron microscopy and immunogold labelling with monoclonal antibody (McAb) Bfl identified an antigen expressed on some in vitro and in vivo grown Bacteroides fragilis NCTC9343 cells.
Immunoprecipitation with this McAb was used to enrich for B. fragilis NCTC9343 cells expressing the Bfl antigen. The McAb Bfl bound to an epitope close to the surface of the outer membrane, but the fibrous capsular network radiating from the bacterial surface was not labelled. Analysis by sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE) and immunoblotting identified 3 high- M _r bands which resisted heating and protease digestion but were partially sensitive to sodium periodate treatment.     

Large scale preparation of PA-oligosaccharides from glycoproteins using an improved extraction method

We have developed a new method for the large scale preparation of pyridylaminated (PA-) oligosaccharides from glycoproteins. Phenol/chloroform extration was adapted for the removal of protein and excess 2-aminopyridine, improving the efficiency of preparation. From a 2.5 g sample of human apo-transferrin, 25–30 mol of agalacto biantennary PA-oligosaccharide could be obtained. By increasing the concentration of PA-oligosaccharide substrate, we were able to detect a very low level ofN-acetylglucosaminlytransferase IV activity in CHO cell extracts.Abbreviations PA 2-aminopyridine - SDS sodium dodecyl sulfate - GlcNAc N-acetylglucosamine - GnT N-acetylglucosaminyltransferase - Gn,Gn-bi-PA GlcNAc1-2Man1-3(GlcNAc1-2Man1-6)Man1-4GlcNAc1-4GlcNAc-2-aminopyridine - Gn,Gn,Gn-tri-PA GlcNAc1-2(GlcNAc1-4)Man1-3(GlcNAc1-2Man1-6)Man1-4GlcNAc1-4GlcNAc-2-aminopyridine - Gn,Gn,Gn-trí-PA GlcNAc1-2Man1-3({GlcNAc1-2(GlcNAc1-6)Man1-6})Man1-4GlcNac1-4GlcNAc-2-aminopyridine - Gn,(Gn),Gn-bi-PA GlcNAc1-2Man1-3(GlcNAc1-4)(GlcNAc1-2Man1-6)Man1-4GlcNAc1-4GlcNAc-2-aminopyridine     

On the formation of the neural keel and neural tube in the zebrafishDanio (Brachydanio) rerio

Morphogenetic movements accompanying formation of the neural keel and neural tube in the zebrafishDanino (Brachydanio) rerio were studied by labelling single neural plate cells with fluoresceinated dextran (FDA) during late gastrula stages (95–100% epiboly) and localizing their progeny with an anti-fluorescein antibody on histological sections throughout neurulation. The mediolateral extent of the neural plate correlates directly with the dorso-ventral extent of the neural tube. That is to say, the progeny of cells located medially in the neural plate come to lie ventrally in the neural tube; cells located laterally in the neural plate give rise to progeny that populate dorsal levels in the neural tube. Fixation of labelled cells at various stages reveals that neural keel and nerve rod are organized as monostratified epithelia and that they maintain this organization during neurulation. These observations strongly suggest that the neural keel in the zebrafish forms by way of infolding of the neural plate and, therefore, utilizes a mechanism similar to primary neurulation in other vertebrates. The folding process juxtaposes the apical surfaces of both flanks of the neural plate at the midline. Mitoses occur preferentially in this zone, leading very frequently to formation of bilaterally symmetrical clones of progeny cells. The size of the clones that develop from injected cells suggests that neural plate cells divide an 1.5 times on average between late gastrula and the end of neurulation. Correspondence to: J.A. Campos-Ortega     

An EPR investigation of surfactant action on bacterial membranes

The effects of the surfactants, alcohol ethoxylate, amine ethoxylate, amine oxide and SDS on cell membranes were investigated using the lipid soluble spin label 5-doxyl stearic acid (5-DS). Electron paramagnetic resonance (EPR) spectroscopy revealed that the action of the surfactants was to significantly increase membrane fluidity of Proteus mirabilis, Staphylococcus aureus and Saccharomyces cerevisiae. The action of these surfactants as biocides was investigated and found to be dependent on the type of organism tested. There was, however, no direct correlation between enhanced membrane fluidity observed due to the action of the surfactants and biocidal activity. Data presented suggest that perturbing the fluidity of the cytoplasmic membrane is not immediately responsible for cell death.     

Une nouvelle méthode de marquage pour certains groupes d'Insectes et de Crustacés

A new technique of labelling, based on making series of microscars on the compound eye of immature insects, allows to recognize individual specimens, even after several moults.

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Une nouvelle méthode de marquage pour certains groupes d'Insectes et de Crustacés

     

A systematic analysis of backbone amide assignments achieved via combinatorial selective labelling of amino acids

With the advent of high-yield cell-free expressions systems, many researchers are exploiting selective isotope labelling of amino acids to increase the efficiency and accuracy of the NMR assignment process. We developed recently a combinatorial selective labelling (CSL) method capable of yielding large numbers of residue-type and sequence-specific backbone amide assignments, which involves comparing cross-peak intensities in ¹H–¹⁵N HSQC and 2D ¹H–¹⁵N HNCO spectra collected for five samples containing different combinations of ¹³C- and ¹⁵N-labelled amino acids [Parker MJ, Aulton-Jones M, Hounslow A, Craven C J (2004) J Am Chem Soc 126:5020–5021]. In this paper we develop a robust method for establishing the reliability of these assignments. We have performed a detailed statistical analysis of the CSL data collected for a model system (the B1 domain of protein G from Streptococcus), developing a scoring method which allows the confidence in assignments to be assessed, and which enables the effects of overlap on assignment fidelity to be predicted. To further test the scoring method and also to assess the performance of CSL in relation to sample quality, we have applied the method to the CSL data collected for GFP in our previous study.     

The frequency and distribution of isolabelling in Chinese hamster chromosomes after exposure to x-rays

2 experiments were carried out, following the same scheme. Chinese hamster cells (line CHEF-125) were cultivated for 4 h in the presence of tritiated thymidine ([³H]TdR) (Expt. 1, 0.5 μCi/ml; Expt. 2, 0.1 μCi/ml). After removal of the isotope, some of the cultures were X-irradiated in stage S-G₂ preceding M₁ (series S-G₂ I), others in stage S-G₂ preceding M₂ (series S-G₂ II).Analysis of the colchicine-C-anaphase of M₂ cells showed that in both experiments the X-rays produced an increase in the isolabelling regions only if given in the S-G₂ stage preceding M₁. On the other hand, the X-rays produced an increase in sister chromatid exchanges (SCEs) in both series of the second experiment. In the first experiment, where the controls had a high frequency of SCEs, no increase in SCEs was recorded in either of the two series treated with X-rays. The frequency of the isolabelling regions, in relation to the total labelling (Expt. 2), was 1.4% in the control series, 2.5% in series S-G₂ I and 1.3% in series S-G₂ II.Analysis of the distribution of the isolabelled regions along the chromosome showed that the regions furthest from the centromere were those most involved in this phenomenon and that, for the most part, the isolabelling was not directly associated with an exchange.The results have been interpreted, in accordance with the theory put forward in a previous work, to mean that SCEs and isolabelling regions are due to different phenomena, the former resulting from an exchange involving the whole chromatid, the latter from subchromatid exchanges probably involving a single polynucleotide strand.     

A critical review of labelling techniques used to quantify rhizosphere carbon-flow

The rhizosphere is a major sink for photo-assimilated carbon and quantifying inputs into this sink is one of the main goals of rhizosphere biology as organic carbon lost from plant roots supports a higher microbial population in the rhizosphere compared to bulk soil. Two fundamentally different¹⁴CO₂ labelling strategies have been developed to estimate carbon fluxes through the rhizosphere — continuous feeding of shoots with labelled carbon dioxide and pulse-chase experiments. The biological interpretation that can be placed on the results of labelling experiments is greatly biased by the technique used. It is the purpose of this paper to assess the advantages, disadvantages and the biological interpretation of both continuous and pulse labelling and to consider how to partition carbon fluxes within the rhizosphere.     

The effect of x-rays on labelling pattern of M 1 and M 2 chromosomes in Chinese hamster cells

Chinese hamster cells (line CHEF-125) were cultured for 1 or 4 h in the presence of tritiated thymidine (³HTdR). Immediately after the end of the treatment with ³HTdR or 4 h afterwards, some cultures were irradiated with X-rays, while others served as controls.Analysis of colchicine-C anaphase of M₁ and M₂ cells showed that: (a) in the M₁ chromosomes the X-rays produced a significant departure from a 1:1 ratio of the number of silver grains counted on the sister chromatids; and (b) in the M₂ chromosomes the X-rays increased significantly the frequency of sister-chromatid exchanges and of isolabelling regions.Subchromatid exchanges involving a single polynucleotide strand may be induced by X-rays. These exchanges would cause inequality of labelling over M₁ sister chromatids and isolabelling in the M₂ chromosomes.     

Cytopathology of Plgeonpea sterility mosaic virus in pigeonpea and Nicotiana benthamiana: similarities with those of eriophyid mite-borne agents of undefined aetiology

Pigeonpea sterility mosaic virus (PPSMV) is transmitted by the eriophyid mite, Aceria cajani, and is very closely associated with sterility mosaic disease (SMD) of pigeonpea (Cajanus cajah) in the Indian subcontinent. Antiserum produced to purified PPSMV preparations detected a virus‐specific 32 kDa protein in sap of SMD‐affected pigeonpea plants by ELISA and Western blotting. PPSMV was transmitted mechanically in sap of SMD‐affected pigeonpea leaves to Nicotiana benthamiana. Ultrastructural studies of symptom‐bearing leaves of two pigeonpea cultivars, (ICP8863 and ICP2376) and N. benthamiana infected with PPSMV, detected quasi‐spherical, membrane bound bodies (MBBs) of c. 100–150 nm and amorphous electron‐dense material (EDM). These structures were distributed singly or in groups, in the cytoplasm of all cells, except those in conductive tissues. Fibrous inclusions (FIs), composed of randomly dispersed fibrils with electron lucent areas, were present in the cytoplasm of palisade cells and rarely in mesophyll cells of the two pigeonpea cultivars but were not detected in infected TV. benthamiana plants. In the PPSMV‐infected pigeonpea cultivars and TV. benthamiana, immuno‐gold labelling, using antiserum to PPSMV, specifically labelled the MBBs and associated EDM, but not the FIs. The MBBs and associated inclusions are similar in appearance to those reported for plants infected with the eriophyid mite‐transmitted High Plains virus and the agents of unidentified aetiology associated with rose rosette, fig mosaic, thistle mosaic, wheat spot chlorosis and yellow ringspot of budwood. The nature of these different inclusions is discussed.     

氮稳定同位素技术在陆地生态系统氮循环研究中的应用

在过去几十年中, 氮(N)稳定同位素技术的发展提高了人们对于陆地生态系统氮循环的认识。该文回顾了氮稳定同位素技术在研究生态系统氮循环中的历史, 综述了最近十多年来氮稳定同位素技术在陆地生态系统氮循环研究中的典型案例, 包括利用氮同位素自然丰度鉴定植物氮来源、指示生态系统氮状态和量化过程速率, 利用¹⁵N标记技术示踪氮的去向和再分布等。该文同时指出这些应用中存在的问题, 以及在陆地生态系统上氮稳定同位素技术今后研究的重点发展方向。     

应用Tn5—1uxAB—sacB基因盒对根瘤菌巨型质粒进行定向标记,缺失或消除

根瘤菌是农业生产实际中应用最多的微生物肥料。随着遗传工程技术的发展和农业生产实际的需求,遗传改良根瘤菌势必要进入田间应用（l）。如何对根瘤菌在田间的应用情况如占瘤率、与土著根瘤菌的竞争生存情况等进行监测,我们采用了发光酶基因工XXAB（2）对根瘤菌实行标记。考虑到发光酶基因在根瘤菌基因组中的不同标记位置,对根瘤菌的应用情况会产生影响,特别是对标记基因的活性强弱和标记基因的稳定性造成影响,从而影响监测结果和随后的安全性评价。因此我们首先对含发光酶基因的载体进行了改造（3）,以利于对根瘤菌的染色体和巨型…     

Synthesis of oxidized methyl 4-O-methyl-beta-D-glucopyranoside and methyl beta-D-glucopyranosyl-(1-->4)-beta-D-glucopyranoside derivatives as substrates for fluorescence labeling reactions

The synthetic cellulose model compounds methyl 4-O-methyl-beta-D-glucopyranoside and methyl 4-O-methyl-beta-D-glucopyranosyl-(1-->4)-beta-D-glucopyranoside and related 6-O-protected intermediates were oxidized in good to fair yields using Swern-conditions or bromine/bis(tributyltin) oxide, respectively, to afford compounds containing 6-aldehyde, 3-keto, and 2,3-diketo groups. Cellobiose and oxidized monosaccharides were then labeled with the carbonyl-selective fluorescence marker 9-(7-amino-1,4,7-trioxaheptyl)-9H-carbazolecarboxamide (CCOA). The labeled derivatives serve as model compounds for the determination of minute amounts of carbonyl groups in cellulosic polysaccharides.