Genetic variation at chloroplast microsatellites (cpSSRs) in Abies nebrodensis (Lojac.) Mattei and three neighboring Abies species

Abies nebrodensis (Lojac.) Mattei (Sicilian fir) is an endangered species represented by only one population of 29 adult individuals occurring in a limited area of the Madonie Range in northern Sicily (Italy). Taxonomic boundaries between this taxon and the neighboring Abies species are not clear. In this study, we used six chloroplast simple-sequence repeats (cpSSRs) to investigate the population genetic structure and the distribution of chloroplast haplotypic variation in A. nebrodensis and three of the neighboring Abies species: Abies alba (Mill.), Abies numidica (De Lann) and Abies cepha-lonica (Loud.). Our aims were to quantify the level of cpDNA differentiation within the Abies populations and to shed light on the history of A. nebrodensis. Diversity levels based on the haplotype frequency at six cpSSRs were high, especially in A. alba and A. cephalonica. In all, we found 122 haplotypes among the 169 individuals analyzed, and the four species were distinguished from each other by their haplotype composition. The majority of the haplotypes (76%) were detected only once, but in A. nebrodensis seven individuals (41% of the sample population) shared the same haplotype. Moreover, the seven A. nebrodensis individuals with an identical haplotype showed a tendency to be geographically grouped within the population"s limited range. The analysis of molecular variance (AMOVA) showed a significant difference in the level of apportionment of gene diversity between the species A. alba and A. cephalonica (F_ST=0.191 and 0.012, respectively). AMOVA analysis conducted over all populations from the four species showed that 19% of the total cpSSR variation was attributable to differences among species, 6% was due to differences among populations within species, and 74% to differences within populations. The high percentage of unique haplotypes identified confirms the power of cpSSR haplotype analysis for identifying individual trees in individual Abies populations. Our results indicate that A. nebrodensis differs from the other three Abies species investigated and support its classification as an independent taxon. The results also showed a decreased level of variation in A. nebrodensis and suggested that the species has experienced a genetic bottleneck during the last two centuries. Received: 10 April 2000 / Accepted: 13 July 2000     

秦岭不同龄组巴山冷杉径向生长对气候因子的响应差异

秦岭地区树轮气候学研究已经引起众多学者的重视,但年龄因素对调节树木径向生长-气候响应关系的研究尚未在当地得到广泛关注。运用树轮气候学方法,建立秦岭牛背梁国家级自然保护区低、中、高3个龄组巴山冷杉(Abies fargesii)的树轮宽度差值年表,探究不同龄组巴山冷杉径向生长与覆盖研究区的0.5°×0.5°分辨率格点气候要素之间的响应关系,以期解译年龄差异对巴山冷杉树木径向生长-气候响应特征的潜在影响。结果表明：不同龄组巴山冷杉差值年表统计特征值存在明显差异,平均敏感度和样本总体代表性随年龄增大而递减,但标准差、样本间平均相关系数和第一特征根变异解释量均以中龄组最低,信噪比却以中龄组最高;春季(3—5月)降水的增加以及秋季(9—11月)气温的升高对低龄组巴山冷杉径向生长的促进作用最强,对中龄组树木生长的促进作用明显减弱,而对高龄组树木生长几乎没有影响;气温对巴山冷杉径向生长的促进作用随树龄增高而增强,差值年表与当年2月、8月、上年5月平均温、平均最高温的相关系数均呈现随龄级增大而逐渐递增的趋势。年龄因素对牛背梁国家级自然保护区巴山冷杉径向生长-气候响应关系存在明确影响,随着年龄的增加,巴...     

Allelic sequence polymorphisms in the intron region of the nuclear-encoded GapC gene preceded the speciation of three closely related Abies species (Pinaceae)

The DNA sequences of GapC intron 8 were determined for three closely related Abies species, Abies firma, Abies homolepis and Abies veitchii, and ten alleles were identified. Although, in most cases, an allele was specifically detected in one species, some rare alleles were found in two species. The phylogenetic analysis of those alleles showed that they trace back to different ancestral sequences, and that a species possessed the different originated alleles. The polymorphism of the GapC gene observed in the three Abies species seemed to have preceded their evolutionary divergence. Received: 1 February 2000 / Accepted: 10 May 2000     

Development and characterization of microsatellite markers in Abies firma and interspecific amplification in other Japanese Abies species

Abies firma is a dominant coniferous tree species endemic to Japan. We isolated eight microsatellite loci from needles of this tree species and tested their polymorphism among 26 A. firma individuals. Six of them showed polymorphism, with two to 16 alleles per locus. Their expected heterozygosities ranged from 0.075 to 0.922. Moreover, interspecific amplification among Abies sachalinensis, Abies mariesii and Abies veitchii was successful in majority of the isolated loci, suggesting that these loci may be useful for characterization of other fir species.     

Forest/environment relationships in Yosemite National Park,California, USA

Forest compositional patterns in Yosemite National Park, California, were related to environmental factors through numerical classification of forest types, arrangement of forest types along elevational and topographic gradients, and development of regression models relating basal area of common tree species to environmental variables. The eight forest types are differentiated primarily by elevation zone and secondarily by topographic setting. Lower montane forests (1200–1900 m) were divided into the Abies concolor/Calocedrus type occurring primarily on mesic sites and the Pinus ponderosa/Calocedrus type predominantly on xeric sites. Upper montane forests (1900–2500 m) included the Abies concolor/Abies magnifica type on mesic sites, the Abies magnifica/Pinus type on somewhat more xeric sites, and Juniperus occidentalis/Pinus jeffreyi woodlands on granitic domes. Subalpine forests (2500–3300 m) embraced three types: Tsuga mertensiana/Pinus forests on mesic sites, monotypic Pinus contorta forests on drier sites, and Pinus albicaulis/Pinus contorta groves at treeline. Regression models consistently included elevation and soil magnesium content as explanatory variables of species basal area totals. The two Abies spp. were negatively correlated with soil magnesium levels, whereas other montane species (e.g. Calocedrus decurrens, Pinus lambertiana, and Pinus ponderosa) exhibited positive correlation with soil magnesium. Topography and soil physical properties were only infrequently incorporated into species regression models.Abbreviations DBH= diameter at breast height (1.4 m) - DCA= detrended correspondence analysis - TWINSPAN= two-way indicator species analysis     

Community structure of Korean fir (Abies koreana) snag‐dwelling arthropods on Hallasan National Park,Jeju Island,Korea

We executed this research to understand the importance of decaying woods as the diverse arthropods' habitat in Abies koreana forests of Mt. Hallasan, Korea, from 2013 April to 2014 July. We discriminated the Abies koreana forests into one live stage and three decay stages in three blocks (Sungpanak, Yeongsil, Donnaeko) with three replicates and collected arthropods using an emergence trap per tree. We also used the different slope, altitude, decay stage and characteristics of dead wood as statistical variables. As A result, a total of six classes 23 orders 99 families 224 species (69,674 individuals) were collected from 282 emergence traps. We found that there were significant differences in abundance among decay stages and study sites. Our research results would be relevant for developing the ecologically sustainable forest management strategies and we expect these results would be used as the basic data for the forest management plans of Abies koreana.     

Post‐glacial history and introgression in Abies (Pinaceae) species of the Russian Far East inferred from both nuclear and cytoplasmic markers

Aim The main aim of the present study is to infer the post‐glacial history of Abies species from north‐east Asia and to test the hypotheses that coastal Abies populations suffered less from climatic fluctuations during Pleistocene glacial periods than their more continental counterparts, and that Sakhalin was a major area of introgression. Location Natural ranges of the fir species Abies nephrolepis, Abies sachalinensis and Abies holophylla in the Russian Far East, and of Abies gracilis, which is endemic to the Kamchatka Peninsula. Methods Nineteen populations were sampled for allozyme analysis. Seventeen of these populations were also screened for variation at two paternally inherited chloroplast DNA microsatellite loci (cpSSR) and variation at one maternally inherited mitochondrial marker (nad4‐3/4). Finally a subset of 11 populations was analysed with amplified fragment length polymorphism (AFLP). Comparisons were made with already available Abies sibirica data. For all sets of markers, we estimated genetic diversity and differentiation using an analysis of molecular variance (AMOVA). Population clustering was assessed with a Bayesian approach implemented in structure v.2.3. Results Among the three major species, A. sibirica, A. nephrolepis and A. sachalinensis, A. sachalinensis demonstrated the highest cytoplasmic and nuclear diversity and the most continental species, A. sibirica, the lowest. Both nuclear and mitochondrial DNA markers revealed the presence of a transitional zone on Sakhalin Island between A. nephrolepis and A. sachalinensis of south Sakhalin. The structure analysis delivered very clear results confirming the admixed origin of A. sachalinensis, with a genetic contribution from A. nephrolepis. No variation in cytoplasmic markers was found in A. gracilis, suggesting the occurrence of a recent bottleneck. Main conclusions There is a clear reduction of genetic diversity in Abies species from the Pacific coast into the continent. The higher diversity in A. sachalinensis could have two causes: a larger effective population size in the islands due to relatively stable climatic conditions and consequently less pronounced demographic fluctuations in population size and/or hybridization with continental and Japanese populations. Sakhalin Island is a major transitional zone for conifer species. Finally, the fir from Kamchatka, A. gracilis, should be regarded as a separate species closely related to the A. nephrolepis–A. sachalinensis complex.     

Genetic variation in Tertiary relics: The case of eastern‐Mediterranean Abies (Pinaceae)

The eastern‐Mediterranean Abies taxa, which include both widely distributed species and taxa with minuscule ranges, represent a good model to study the impacts of range size and fragmentation on the levels of genetic diversity and differentiation. To assess the patterns of genetic diversity and phylogenetic relationships among eastern‐Mediterranean Abies taxa, genetic variation was assessed by eight nuclear microsatellite loci in 52 populations of Abies taxa with a focus on those distributed in Turkey and the Caucasus. Both at the population and the taxon level, the subspecies or regional populations of Abies nordmanniana s.l. exhibited generally higher allelic richness, private allelic richness, and expected heterozygosity compared with Abies cilicica s.l. Results of both the Structure analysis and distance‐based approaches showed a strong differentiation of the two A. cilicica subspecies from the rest as well as from each other, whereas the subspecies of A. nordmanniana were distinct but less differentiated. ABC simulations were run for a set of scenarios of phylogeny and past demographic changes. For A. ×olcayana, the simulation gave a poor support for the hypothesis of being a taxon resulting from a past hybridization, the same is true for Abies equi‐trojani: both they represent evolutionary branches of Abies bornmuelleriana.     

甘南黄河流域4种典型林分土壤C、N、P化学计量特征

土壤碳（C）、氮（N）、磷（P）是参与植物光合作用和影响生态系统初级生产力的主要元素。甘南高原是黄河流域重要的生态屏障,为了解该区不同林分土壤养分状况的差异,选取该区4种典型林分：云杉林、华北落叶松林、巴山冷杉林以及岷江冷杉糙皮桦混交林为研究对象,研究土壤C、N、P化学计量特征。结果表明：（1）岷江冷杉及糙皮桦混交林土壤C、N含量最高,云杉林土壤N、P含量最低。不同林分间P含量差异显著（P<0.05）,不同土层间C、N含量差异均显著（P<0.05）。（2）云杉林土壤C ： N值显著高于其他林分,岷江冷杉及糙皮桦混交林土壤N ： P及C ： P高于其他林分。（3）海拔、土壤pH、容重与土壤含水量是影响土壤养分的重要因素。土壤C含量与N、P含量均显著相关（P<0.05）。总体来说,不同林分土壤化学计量特征具有显著差异,混交林土壤养分状况较纯林好,未来森林管理和植被建设中,可以通过选择合适的树种和提高树种多样性有效改善森林土壤质量。     

The dynamics of old-growth Pseudotsuga forests in the western Cascade Range,Oregon, USA

Size and age structure, spatial analysis, and disturbance history were used to analyse the population structures and regeneration patterns of 8 conifer stands in the central western Cascade Range, Oregon, USA. Variation in forest structure reflected the effects of frequent (20–50 yr) low-intensity fires and treefalls, infrequent (100–200 yr) localised, intense fires, and extensive fires that resulted in stand replacement (every ca 400 yr?).The amount of canopy removed and the size of openings formed by fires and treefalls were important determinants of subsequent forest establishment. Single or several species stands of Pseudotsuga and/or Abies procera, or mixed species stands of Pseudotsuga, Abies procera, Tsuga heterophylla and Abies amabilis established in openings where intense fires had removed most of the canopy trees over several ha. Multi-tiered and multi-aged stands, often containing 400–500 yr-old Pseudotsuga and variously-sized more or less even-aged patches of younger shade tolerant Tsuga heterophylla and/or Abies amabilis, occurred where lower-intensity fires did not kill all overstorey trees or where treefalls occurred after the initial fire.Current regeneration processes are influenced by overstorey composition, the availability and size of canopy openings, and the availability of substrates suitable for regeneration. Tsuga heterophylla and Abies amabilis established under Pseudotsuga menziesii and Abies procera canopies and in small canopy openings (<400 m²) created by windfalls, but rarely under Tsuga. Down logs and stumps were favoured establishment sites for Tsuga.The disturbance regime of fires of low-to moderate-intensity, windfalls, and occasional fires that result in extensive stand replacement contrasts with the pattern of infrequent, catastrophic disturbances proposed for other areas of the Pacific Northwest. Although fires at stand establishment commonly determine much of the composition, structure, and subsequent stand development, canopy replacement by shade tolerant species occurs as the different life histories of the species are expressed in response to various disturbances differing in intensity and frequency. Such a non-equilibrium view of vegetation change is consistent with many other fire-dominated forests of the western United States.     

Identification and characterization of nuclear microsatellite loci in Abies alba Mill.

Eleven polymorphic nuclear microsatellite markers for Abies alba Mill. were developed from an enriched genomic library. An average of 5.2 alleles per locus and a mean expected heterozygosity of 0.532 were found in a sample of 24 Abies alba individuals from different populations within Europe. These loci can be used in studies of genetic diversity for parentage analysis and for estimation of gene flow in silver fir populations. Moreover, successful amplifications were obtained for eight other Mediterranean Abies species, suggesting that these loci may be useful for similar applications in other fir species.     

Species-specific acclimation to strong shade modifies susceptibility of conifers to photoinhibition

Photoinhibitory processes in the photosynthetic apparatus of the seedlings of Abies alba (Mill.), Picea abies (Karst.), and Pinus mugo (Turra) growing under strong shade (5 % of full solar irradiance) or full irradiance conditions were investigated in winter and spring using chlorophyll a fluorescence techniques. The extent of photoinhibition in needles as indicated by a decrease in maximum quantum yield of PS II photochemistry (F_v/F_m) depended on species, air temperature and acclimation to the light environment. Unexpectedly, shade-tolerant Abies alba was less affected by low-temperature photoinhibition compared to the other species. F_v/F_m recovered with increasing air temperature. During winter, the seedlings of Picea abies growing in shade showed higher F_v/F_m than those from full light. Non-photochemical quenching of fluorescence (NPQ) measured at the same levels of actinic light was higher in needles acclimated to full light except for Abies alba in February. Photosynthetic performance in term of ETR (apparent electron transfer rate) was also higher in full light-acclimated needles. In April, at ambient temperature, recovery of PS II efficiency from the stress induced by illumination with saturating light was faster in the needles of Picea abies than in those of Abies alba. The shade-acclimated needles of Abies alba and Picea abies showed greater down-regulation of PS II induced by high light stress.     

Establishment processes and regeneration patterns of montane virgin coniferous forest in northeastern China

Abstract. The co-occurrence of Larix olgensis var. changpaiensis, Picea jezoensis and Abies nephrolepis in the coniferous forest of Mount Changbai, northeastern China, is discussed, and the regeneration pattern of these taxa compared on the basis of the analysis of the age structure and the age-height relationship of the three conifers. The presence of tall individuals (ca. 30 m in height) of Larix olgensis var. changpaiensis, which does not show any regeneration, was related to the large eruption of Mount Changbai up to ca. 400 yr ago. Picea jezoensis compensates its small recruitment by a large stem size and long life span together with a continuous height growth. Abies nephrolepis recruits well, but its small stem size and short life span do not result in its dominance in the forest.     

L'Azione Fisiologica del Nichel Sulle Piante di un Terreno Serpenitinoso

Abstract

The Author, on the basis of numerous results of pollen analysis on turfy-clayey deposits especially in Delta Padano, shows the gradual impoverishment, the main ancient species (Pinus haploxylon, Abies nordmanniana, Tsuga, Cedrus, Carya, Pterocarya, Zelkova, Castanea latifolia) suffered from during middle and upper Pleistocene.     

Pollen dispersal and deposition characteristics of Abies alba, Fagus sylvatica and Pinus sylvestris, Roztocze region (SE Poland)

Pinus sylvestris L., Abies alba Mill. and Fagus sylvatica L.—the significant forest forming tree species in Europe are important for palaeoecological interpretations based on the results of pollen analysis of fossil deposits. The potential pollen loading for Pinus sylvestris, Abies alba and Fagus sylvatica was modelled using simulated and actual vegetation maps, measured fall-speed values and pollen productivity estimates from the literature. The influx of fir pollen drops sharply with distance from the pollen source due to the high fall speed and moderate pollen productivity. The vast majority of Abies alba pollen is deposited within less than 50 m of the sampling site and a major proportion within 100 m. For beech the corresponding numbers would be 300 and 1,800 m, and for pine 1,000 and 4,500 m. The observed mean pollen accumulation rate (PAR) values for Pinus and Fagus were ca. 5,800 and 1,100 grains cm⁻² year⁻¹, respectively. In the case of Abies, the mean annual PAR for the whole region is ca. 700 grains cm⁻² year⁻¹. In SE Poland the regional signal is represented by PARs of Abies alba <200 grains cm⁻² year⁻¹ and of Fagus sylvatica <500 grains cm⁻² year⁻¹. The local presence/absence threshold values for Abies alba, Fagus sylvatica and Pinus sylvestris are >1,000 grains cm⁻² year⁻¹, >2,000 grains cm⁻² year⁻¹ and >3,500 grains cm⁻² year⁻¹ respectively.     

Optimization of Algerian fir somatic embryos maturation

The effect of maturation pretreatment on development and growth of Abies numidica De Lann. somatic embryos was studied. The most beneficial was pre-culturing on Schenk and Hildebrandt medium without growth regulator for 2 weeks. Dry mass accumulation of emblings was lower than that of seedlings after 50 d of culturing. Contents of microelements in seedlings were higher than in emblings, but macroelements contents were higher in emblings. Contents of chlorophyll a and chlorophyll b in cotyledons were higher in seedlings than in emblings while no qualitative differences were detected between the protein profiles of seedlings and emblings.     

Genetic variability of Siberian fir <Emphasis Type="Italic">Abies sibirica</Emphasis> Ledeb. inferred from AFLP markers

Genetic variability of AFLP markers was studied in 20 populations of Siberian fir (Abies sibirica, Pinaceae) and in two populations of Far-Eastern species Manchurian fir A. nephrolepis and Sakhalin fir A. sachalinensis each. Four pairs of selective primers were used. In total, 168 samples from three fir species were genotyped for 117 polymorphic loci. According to the AMOVA results, the variability proportion characterizing the differences among three Abies species was several times higher (F _CT = 0.53) than that acounting for population differences within the species (F _SC = 0.125). Differentiation of the A. sibirica populations based on AFLP markers exceeded 14% (F _ST = 0.141). Significant correlation between the genetic distances calculated from the AFLP data and the geographic distances between populations was found. The results of AFLP variability analysis supported and supplemented the conclusions inferred previously from allozyme and cpSSR data: several genetically similar geographic groups of Siberian fir were identified. These groups differ both in allele frequencies and in the levels of genetic variation.     

Evolutionary history of two endemic Appalachian conifers revealed using microsatellite markers

Fraser fir (Abies fraseri [Pursh] Poir.) and intermediate fir (Abies balsamea [L.] Mill. var. phanerolepis Fern.) exist in small populations in the Appalachian highlands of the southeastern United States. We used ten nuclear microsatellite markers to quantify genetic variation within Fraser fir and intermediate fir, and to examine their evolutionary relationships with the widespread balsam fir (Abies balsamea [L.] Mill.). We found little genetic differentiation among these taxa, suggesting that Fraser fir might best be classified as a variety of balsam fir. The results further appear to reject the hypothesis that intermediate fir was of hybrid origin between two comparatively distantly related species. Low levels of genetic diversity suggest that intermediate fir and Fraser fir have undergone at least some genetic degradation since post-Pleistocene isolation. The results may prove important for in situ and ex situ gene conservation efforts for Fraser fir and intermediate fir, which are imperiled by an exotic insect and by global climate change.     

Pitfalls in determining size homoplasy of microsatellite loci

Size homoplasy of microsatellite loci can be detected by single‐strand conformation polymorphism analysis (SSCP) or sequence analysis. The present note demonstrates pitfalls of sequencing microsatellite loci. A complex chloroplast microsatellite locus was polymerase chain reaction (PCR) amplified from 33 Abies alba individuals, and the products cloned and sequenced. After 2–7 clones per individual had been sequenced and aligned, differences in repeat numbers occurred among clones of the same individual. It was concluded that the DNA polymerase slippage during PCR most probably caused this variation. A solution specific to the analysed complex locus was found by splitting it into two new loci.