Nuove ricerche sulla coltura in vitro di Aucuba japonica Thunb

Abstract

New researches on the culture « in vitro » of Aucuba japonica Thunb, – Caulinar fragments grown in vitro in nutrient media solidified with agar are compared with fragments grown on a filter paper support on unshaken liquid media. Tissue cultures of Aucuba are established putting down caulinar fragments just taken from the plant with isolated callus; subcultures are obtained more easily in July. We have observed that during the months of March or April, caulinar fragments, taken from the plant at various months of the year, of different ages and cultivated on various media, unexpectedly produce many roots.     

成都平原不同种植方式折耳根表面附生细菌群落结构与抗生素抗性基因分析

【目的】分析有机、化肥和野生折耳根表面的附生细菌群落结构和抗生素抗性基因(ARGs),揭示细菌群落结构与ARGs相互关系。【方法】高通量测定16SrRNAV3-V4可变区序列分析样品表面附生细菌群落结构;PCR和qPCR扩增29种ARGs基因分析样品表面ARGs污染情况;冗余分析(RDA)探讨细菌群落结构与ARGs的相互关系。【结果】折耳根表面检测到35个属的细菌,其中有机折耳根表面附生细菌多样性低于化肥和野生折耳根(P0.05);29种被检的ARGs中,有14种在折耳根中被检出,其中有机折耳根含有全部被检出的ARGs,化肥和野生折耳根则含有部分被检出的ARGs。折耳根表面ARGs污染的多样性和丰度显著受到样品表面的菌群结构影响,其中Lactococcus、 Escherichia、Fluviicola、Enterococcus、Sanguibacter和Acidovorax是影响ARGs最主要的菌群。【结论】有机种植极大地改变了折耳根表面附生细菌的群落结构,增加了ARGs的多样性和丰度,对有机折耳根的食品安全带来了潜在威胁。因此,有必要将ARGs污染监测纳入到有机折耳根的食品安全考核范围内。     

Proliferazione e Rizogenesi in Frammenti Fogliari di Cichorium Intybus L.: Osservazioni Istologiche

Abstract

Proliferation and formation of roots in leaf fragments of «Cichorium intybus» L.: histological observations. — Leaf fragments of Cichorium intybus grown in vitro, from radical stocks, are cultivated in aseptic media. They are taken from different leaf areas and planted into the substratum with their distal or proximal part, or else put down horizontally on it. The frequency of proliferation is influenced only by the position of the fragments in relation to the substratum. Histological variations connected with the arising and the development of callus and roots are studied. The proliferation of the callus as well as the formation of roots by the leaf fragments take place in the area of the veins; the callus, in its turn, may give rise to other callus or roots. The callus obtained consist either of more or less homogeneous parenchima with vascular nodules, or of untidy masses of tracheids, parenchimal cells and little dividing cells. The roots have a structure similar to that of roots directly cultivated in vitro from radical stocks of chicory and to that of the roots in the natural state.     

猫爪草中的脂肪酸类化合物

为了解小毛茛(Ranunculus ternatus Thunb.)的化学成分,采用色谱技术从其干燥块根猫爪草中分离纯化得到5个脂肪酸类化合物,经波谱分析,他们的结构分别鉴定为(R)-3-hydroxy-11-methoxy-11-oxoundecanoic acid(1)、十六烷酸(2)、棕榈酸乙酯(3)、已二酸(4)和硬脂酸(5)。其中,化合物1为新化合物,这些成分对耐药结核分枝杆菌(耐INH+RFP)有一定的体外抑制活性。     

Monitoring of tube‐nesting bees and wasps with bamboo tube nest traps of different types in two types of forests in temperate Japan

Tube‐nesting bees and wasps were collected with bamboo tube nest traps in a cherry blossom forest and an old secondary forest in Tama Forest Science Garden in the western suburbs of Tokyo. Curtain type traps, in which bamboo tubes were vertically arranged, attracted more bees and wasps to nests than bundle type traps, in which bamboo tubes were bundled haphazardly. The attractiveness of small tubes was similar between small tube traps, which were only composed of small tubes (about 4 mm in diameter), and size mixture traps, which set small tubes together with larger tubes, indicating that the presence of the larger species did not affect the nesting of small species. In the cherry forest, which was characterized by the sparse distribution of deciduous cherry trees with a thin canopy layer and rich growth of weeds, Megachilidae, Colletidae, Sphecidae and Eumenidae were common. In the shady secondary forest, where evergreen trees (Abies firma Sieb. et Zucc., Quercus glauca Thunb.) and shrubs (Aucuba japonica Thunb., Eurya japonica Thunb., Camellia japonica L.) were prevalent, Pompilidae was abundant. Among five species of Crabronidae recorded in this study, four were collected mostly in the cherry forest, whereas the most abundant, Trypoxylon malaisei Gussakovskij, was also common in the secondary forest. Likewise, Auplopus carbonarius (Scopoli) (Pompilidae) was common in the secondary forest and not rare in the cherry forest. These results suggest that the tube‐nesting bees and wasps can be a good bioindicator for monitoring environment.     

Frammenti cotiledonari di Aesculus hippocastanum L. coltivati in vitro. Primi dati sul comportamento dell'amido e dell'escina

Abstract

Fragments of Aesculus hippocastanum L. cotyledons grown in vitro. First results about starch and aescin characteristic features.—Cotyledon fragments of Aesculus hippocastanum grown in vitro in different media have been able to form callus and roots. The starch granules in the new cells are compound in structure and morphologically different from the simple cotyledon granules, whereas they are similar to the granules of the other parts of the plant in toto. Moreover, the callus has no aescin even though it originates from the cotyledor tissues.     

Synthesis and Biological Evaluation of Modified DNA Fragments for The Study of Nucleotide Excision Repair in E. coli

Abstract

Three new cholesterol-containing phosphoramidites where synthesized and used in automated synthesis of modified DNA fragments. These cholesterol lesions are good substrates for the E. coli UvrABC endonuclease. In vitro they are incised from damaged DNA with higher efficiency in respect with the cholesterol lesions previously published.     

Comparison of ecophysiological responses to heavy snow in two varieties ofAucuba japonica with different areas of distribution

Aucuba japonica varieties are common evergreen understory shrubs in Japan.Aucuba japonica var.borealis is distributed on the Sea of Japan side of Honshu and Hokkaido where heavy snow cover lasts for more than 3 months in winter.Aucuba japonica var.japonica is distributed in areas with shallow or no snow on the Pacific Ocean side of Honshu and Shikoku. The ecophysiological characteristics of var.borealis were compared with those of var.japonica to examine the effects of heavy and long-term snow cover on the life cycle of var.borealis. Shoots of both varieties were shaded in crushed ice for 110 days, but their photosynthetic activities, chlorophyll contents and the chlorophylla/b ratio was not affected. The leaves of var.borealis were no less frost tolerant than those of var.japonica. In spite of the difference in environmental factors, both varieties had similar characteristics in seasonal changes of photosynthesis, respiration and chlorophylla/b ratio. These results suggest that var.japonica could survive in areas with heavy snow where it does not normally occur. Leaf net production (LNP) was estimated based on the microclimatic data and seasonal photosynthetic and respiration rates. The difference in the annual LNP between the two varieties was equivalent to the difference in the LNP during the snow season. One of the major effects of snow cover is to interrupt and reduce the production period of var.borealis.     

Oviposition site of and gall formation by the fruit gall midge Asphondylia aucubae (Diptera: Cecidomyiidae) in relation to internal fruit structure

Most gall insects use young developing plant organs for gall formation; however, little information is available on the histological identification of such tissues or the changes in their availability with plant growth. We investigated the oviposition site of and the tissue used for gall formation by the midge Asphondylia aucubae Yukawa and Ohsaki, which is responsible for galls on the fruit of Aucuba japonica Thunb., by comparing the internal structures of young developing fruit, mature intact (uninfested) fruit, and galled fruit. The midge deposited eggs between the integument and the carpel of young fruit. Larval chambers were made of callus‐like tissue and were formed between the embryo sac and the carpel, where the integument was initially situated. The integument and part of the carpel were thus identified as critical plant tissues used by A. aucubae in forming galls. The integument degenerates in mature intact fruit; therefore, the season of emergence and oviposition by the midge may be determined by the timing of integument degeneration.     

苏云金芽胞杆菌转录调控因子CodY的体外靶基因的筛选

【目的】利用Avi-tag和Pulldown技术建立体外靶基因筛选的新方法,在苏云金芽胞杆菌YBT-1520基因组范围内进行体外高通量筛选转录调控因子CodY的靶基因,为深入研究CodY在苏云金芽胞杆菌中的功能及调控网络打下基础。【方法】用Avi-tag技术对CodY蛋白进行体外生物素标记,酶切苏云金芽胞杆菌YBT-1520总DNA并在两端加上便于测序的adapter序列,用链霉亲和素树脂筛选与CodY蛋白相互作用的靶基因。【结果】在苏云金芽胞杆菌中得到了46条CodY可以直接作用的靶序列,分析发现CodY在苏云金芽胞杆菌中主要调控氨基酸代谢、糖代谢、脂肪酸代谢、转运、调控、DNA修复、双组份调控等的转录。【结论】本研究采用的Avi-tag技术具有特异性强、操作简单、成本低等优势,为转录因子体外靶序列的高通量筛选提供新的方法;苏云金芽胞杆菌中CodY靶基因的筛选为其他微生物中CodY的功能研究打下基础。     

Activation of Spleen Lymphocytes by Plasmid DNA

Abstract

It was shown that plasmid pUC19 DNA stimulates in vitro proliferation of CBA mouse splenocytes in a dose-dependent manner. Stimulation effect of the plasmid DNA is additive with Con A or LPS, synergistic with PMA and is inhibited by nonimmunogenic phosphodiester oligonucleotides and Fab fragments of antimouse Ig antibodies. These data and the data of affinity labelling of ODN-binding proteins indicate that immunoglobulin receptors are involved in DNA-induced lymphocyte activation.     

Analysis of soybean chloroplast DNA replication by two-dimensional gel electrophoresis

Chloroplast DNA replication was studied in the green, autotrophic suspension culture line SB-1 of Glycine max. Three regions (restriction fragments Sac I 14.5, Pvu II 4.1 and Pvu II 14.8) on the plastome were identified that displayed significantly higher template activity in in vitro DNA replication assays than all other cloned restriction fragments of the organelle genome, suggesting that these clones contain sequences that are able to direct initiation of DNA replication in vitro. In order to confirm that the potential in vitro origin sites are functional in vivo as well, replication intermediates were analyzed by two-dimensional gel electrophoresis using cloned restriction fragments as probes. The two Pvu II fragments that supported deoxynucleotide incorporation in vitro apparently do not contain a functional in vivo replication origin since replication intermediates from these areas of the plastome represent only fork structures. The Sac I 14.5 chloroplast DNA fragment, on the other hand, showed intermediates consistent with a replication bubble originating within its borders, which is indicative of an active in vivo origin. Closer examination of cloned Sac I 14.5 sub-fragments confirmed high template activity in vitro for two, S/B 5 and S/B 3, which also seem to contain origin sites utilized in vivo as determined by two-dimensional gel electrophoresis. The types of replication intermediate patterns obtained for these sub-fragments are consistent with the double D-loop model for chloroplast DNA replication with both origins being located in the large unique region of the plastome [17, 18]. This is the first report of a chloroplast DNA replication origin in higher plants that has been directly tested for in vivo function.     

单克隆抗体生产的新时代

由fd噬菌体与质粒重组载体噬菌粒(phagemid)构建大容量,高效筛选的表面表达抗体基因片段文库,经突变、模仿体内B细胞亲和力成熟过程(affinity maturation)以免疫亲和层析筛选高亲和力特异抗体片段.取代单克隆抗体,应用于免疫分析诊断.     

何首乌不同种质花粉形态及进化趋势研究

采用电镜扫描法,对48份何首乌种质的花粉形态进行了观察和分析。结果表明:何首乌花粉形状主要为椭球形,少量为长椭球形和近球形,部分种质花粉形状正处于椭球形向长椭球形进化的阶段;极面观主要为三裂圆形,部分种质的变异为半球状、四边形、凹陷状或平三角形;赤道面观主要为椭圆形,部分种质为三角形或四边形;萌发沟3条,狭长,几达两极,部分种质的1条或2条萌发沟中部或近极端处隆起,2条或3条萌发沟在极端处相交;表面纹饰为穴状,部分种质的穴中出现小孔。研究结果表明,何首乌物种正处于活跃进化阶段且因区域及生境的差异其进化速度不一致,低纬度地区的种质进化程度较高纬度地区的高,其最初的起源中心可能位于高纬度地区,在向低纬度地区迁移过程中其花粉形态发生了不同程度的变异。     

Pollen-pistil interactions in Hermodactylus tuberosus Mill. (Iridaceae)

ABSTRACT

Hermodactylus tuberosus Mill. (Iridaceae) is a species with a very short style and a tricarpellar unilocular ovary. For ornamental purposes it is usually reproduced by means of tubers, although both vegetative and seed reproduction occur in nature. However, its capsules do not contain many seeds in comparison to the high number of ovules inside the ovary. To understand this conflicting process a study on H. tuberosus pollen-pistil interaction was carried out. Pollen viability was evaluated by different techniques. Germination rate was tested in vitro and in vivo after stigma, intrastylar and intraovarian pollinations. A high percentage of the pollen grains were found to be viable resulting in a high percentage of in vitro germination and a low rate of germination on the stigma. Indeed, many pollen tubes developed after intrastylar and intraovarian pollinations. Several anomalies characterized pollen germination and pollen tube growth in vitro and in vivo. Observations from field trials indicated that capsules were only produced from open or hand, cross- pollinated flowers, confirming that the plant is self- incompatible and not apomictic. In addition, all the mature capsules contained only a few mature seeds suggesting the existence of pre- and postzygotic seed set inhibition.     

MAR文库及其在真核基因组作图上的应用研究

基质结合区(matrix association regions,MAR) 是真核生物基因组中特有的一种参与基因表达调控和染色体动力学的顺式作用元件,也是真核染色体上的一种固有且各不相同的分子标记.通过体外(in vitro)或体内(in vivo)结合法可以得到与核基质特异性结合的MAR分子而构建MAR文库.体外MAR作为一种结构性的边界元件可用于染色体物理图谱的构建;而体内MAR作为某一组织中与核基质特异性结合的功能元件,则可用于研究已知基因的表达调控和染色体组织以及对新基因的分析.     

Habitat niche specialization in an understory species in a warm temperate forest

Relationships between microhabitat variables; understory light conditions in summer and winter, altitude, slope inclination and topographic categories (valley, ridge, and slope) and the distribution of Aucuba japonica Thunb. (Cornaceae), a common understory shrub species in Japan were examined using non-contagious 66, 20 × 20 m² quadrats. The Morishita’s I _δ suggested that A. japonica distributions were strongly heterogeneous among the quadrats. Therefore positive spatial autocorrelation of A. japonica at a within-quadrat level (≤20 m) was obvious. Moran’s I statistics showed a significant positive spatial autocorrelation in A. japonica abundance within the distance shorter than 60 m. But the partial Mantel tests suggested that the mass effect from neighboring quadrats would little explain A. japonica abundance in a quadrat. The partial Mantel tests also clearly showed that A. japonica distributions were strongly structured by topography and understory light conditions. Using Monte Carlo randomization tests, we found that A. japonica was aggregately distributed in quadrats in valley which were covered by deciduous canopies. Better understory light conditions in winter together with valley edaphic conditions may increase the abundance of A. japonica there. It is concluded that habitat niche specialization is important in structuring distribution of A. japonica in this forest community.     

Replication of a Bacillus subtilis oriC plasmid in vitro

We constructed an in vitro replication system specific for a Bacillus subtilis oriC plasmid using a soluble fraction derived from cell extracts of B. subtilis. DNA polymerase III and two initiation proteins, DnaA and DnaB, were required for in vitro replication as observed in vivo. Both upstream and downstream DnaA box regions of the dnaA gene were required as cis-elements for in vitro synthesis of the B. subtilis oriC plasmid as well as for in vivo activity. The replication was semi-conservative and only one round of replication occurred within 15min. These results indicate that in vitro replication faithfully reproduced in vivo replication. To elucidate the site of initiation and the direction of replication, we analysed replicative intermediates generated in vitro in the presence of various concentrations of ddGTP by two methods. First, analysis of restriction fragments around the dnaA gene showed a high level of incorporation of the radioactive substrate, indicating that replication began within the vicinity of the dnaA gene. Second, using 2-dimensional gel electrophoresis, bubble arcs were detected only on fragments containing the DnaA box region downstream of the dnaA gene, indicating that the initiation site resided within this region. The distribution of the bubble arcs suggested that both bidirectional and unidirectional replication occurred in vitro.     

一种适用于链霉菌异源合成基因簇同框缺失的高效方法

【背景】对抗生素生物合成途径的阐明有助于提高目标化合物的产量并开发具有更高活性的新化合物。基因的同框缺失是天然产物生物合成研究的常规手段,通过分析突变菌株积累的中间产物,可以帮助推导天然产物的合成途径及相关基因的功能。天然产物生物合成基因簇的大小一般在20 kb以上,对每个基因进行同框缺失耗时耗力,因此,优化链霉菌来源的基因同框缺失的方法有重要的意义。【目的】基于PCR-targeting重新设计了一套在链霉菌柯斯文库质粒上进行基因同框缺失的方法,实现链霉菌基因在大肠杆菌中快速、高效的基因同框缺失的技术体系。【方法】使用氨苄青霉素抗性基因bla作为PCR-targeting DNA片段的筛选标记,同时使用体外的Pac I酶切和酶连系统代替体内的Flp/FRT系统来介导同框缺失的构建。【结果】利用这种方法,在6 d内完成了米多霉素生物合成基因簇中14个基因的同框缺失。【结论】此方法与传统的PCR-targeting方法相比,构建同框缺失载体的效率明显提高;Pac I识别序列在链霉菌基因组上的稀有性使得此方法在构建抗生素生物合成基因簇必需基因的同框缺失载体上具有普适性。     

Seed biology and in vitro seed germination of Cypripedium

Abstract

Cypripedium orchids have high horticultural value. The populations of most species are very geographically restricted and they are becoming increasingly rare due to the destruction of native habitats and illegal collection. Reduction of the commercial value through large-scale propagation in vitro is a preferable option to reduce pressure from illegal collection. Cypripedium species are commercially propagated via seed germination in vitro. This review focuses on in vitro seed germination and provides an in-depth analysis of the seed biology of this genus.